BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08510.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919597 jgi|Araly1|919597|scaffold_100878.1 2272 0.0
> Ahg919597 jgi|Araly1|919597|scaffold_100878.1
Length=1394
Score = 2272 bits (1230), Expect = 0.0
Identities = 1344/1399 (96%), Gaps = 8/1399 (1%)
Strand=Plus/Plus
Query 208 CAGAGAGGCTGCCGAAGAAAGGAGAATTTAGGGTTTGGAGACTTTTGTTGAAATTTGGCG 267
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 CAGGGAGGCTGCCGAAGAAAGGAGAATTTAGGGTTTGGAGAC-TTTGTAGAAATTTGGCG 59
Query 268 TTACGttttttttGTATTTCCTCAACAAATTTCTCATCTGCTCTCTTCATATTGTGTCTT 327
||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 60 TTACG-TTTTTTTGTATTTCTTCAA-TTATTTCTCATCTGCCCTCTTCATATTGTGTCTT 117
Query 328 TGAACGCTTCATCTCCTCGTCATGGTGGCCACCTCTGCTACGTCGTCATTCTTTCCTGTA 387
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 118 TGAACGCTTCATCTCCTCGTCATGGTGGCCACCTCTGCTACTTCGTCATTCTTTCCTGTA 177
Query 388 CCATCTTCTTCACTTGATCCTAATGGAAAAGGCAATAAGATTGGGTCTACGAATCTTGCT 447
|| |||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 178 CCGTCTTCTTCGCTTGATCCTAATGGAAAAGGCAACAAGATTGGTTCCACGAATCTTGCT 237
Query 448 GGACTCAATTCTGCACCTAACTCTGGTAGGATGAAGGTTAAACCAAACGCTCAGGCTCCA 507
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 GGACTCAATTCTGCACCAAACTCTGGTAGGATGAAGGTTAAACCAAATGCTCAGGCTCCA 297
Query 508 CCTAAGATTAATGGGAAAAAGGTTGGTTTGCCTGGTTCTGTAGATATTGTAAGGACTGAT 567
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 298 CCTAAGATTAATGGAAAAAAGGTGGGTTTGCCTGGTTCTGTAGATATCGTAAGGACTGAT 357
Query 568 ACCGAGACCTCATCACACCCTGCGCCGAGAACTTTCATCAACCAGTTACCTGACTGGAGC 627
| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 ATCGAGA---CGTCACACCCTGCCCCGAGAACTTTCATCAACCAGTTACCTGACTGGAGC 414
Query 628 ATGCTTCTTGCTGCTATAACTACGATTTTCTTAGCGGCTGAGAAACAGTGGATGATGCTT 687
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 415 ATGCTTCTTGCTGCTATAACAACGATTTTTTTAGCAGCTGAGAAACAGTGGATGATGCTT 474
Query 688 GATTGGAAACCTAGGCGTTCTGACATGCTGGTGGATCCTTTTGGTATAGGGAGAATTGTT 747
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 GATTGGAAACCCAGGCGTTCTGACATGCTGGTGGATCCGTTTGGTATAGGGAGAATTGTT 534
Query 748 CAGGATGGCCTTGTGTTCCGTCAGAATTTTTCTATTAGGTCATATGAAATAGGTGCTGAT 807
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 535 CAGGATGGCCTTGTGTTCCGTCAGAATTTCTCCATTAGGTCCTATGAAATAGGTGCTGAT 594
Query 808 CGCTCTGCATCTATAGAAACCGTCATGAATCATCTGCAGGAAACGGCGCTTAATCATGTT 867
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 595 CGCTCTGCATCTATAGAAACCGTCATGAATCATTTGCAGGAAACAGCGCTTAATCATGTT 654
Query 868 AAGACTGCTGGATTGCTTGGAGATGGGTTTGGCTCTACACCTGAGATGTTTAAGAAGAAC 927
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 AAGACTGCTGGATTGCTGGGAGATGGGTTTGGCTCTACCCCTGAGATGTTTAAGAAGAAC 714
Query 928 TTGATATGGGTTGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTGGGGAGAT 987
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTGATATGGGTCGTCACTCGTATGCAGGTTGTGGTTGATAAATATCCTACTTGGGGAGAT 774
Query 988 GTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTTGTTGAAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGG 834
Query 1048 CTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGTGTGTGGGTGATG 1107
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 CTAGTTCGGGATTGCAATACTGGAGAAACGTTAACACGAGCATCAAGTGTGTGGGTGATG 894
Query 1108 ATGAATAAACTGACAAGGAGATTGTCAAAGATTCCTGAAGAGGTTCGAGGGGAAATAGAG 1167
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 ATGAATAAACTGACAAGGAGATTGTCGAAGATTCCTGAAGAGGTTCGAGGGGAAATAGAG 954
Query 1168 CCTTATTTTGTGAATTCTGATCCTGTCCTTGCCGAGGACAGCAGAAAGTTAACAAAAATT 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 955 CCTTATTTTGTGAATTCTGATCCTGTCCTTGCCGAGGACAGCAGAAAGTTAACAAAACTT 1014
Query 1228 GATGACAAGACTGCTGACTATGTTCGATCTGGTCTCACTCCTCGATGGAGTGACCTAGAT 1287
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1015 GATGACAAGACTGCTGACTATGTTCGATCTGGTCTCACTCCGCGATGGAGTGACCTAGAT 1074
Query 1288 GTTAACCAGCATGTGAATAATGTAAAGTACATTGGGTGGATCCTGGAGAGTGCTCCAGTG 1347
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTTAACCAGCATGTTAATAATGTAAAGTACATTGGGTGGATCCTGGAGAGTGCTCCAGTG 1134
Query 1348 GGAATAATGGAGAGGCAGAAGCTGAAAAGCATGACTCTGGAGTATCGGAGGGAATGCGGG 1407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1135 GGAATAATGGAGAGGCAGAAGCTGAAAAGCATGACTCTGGAGTATCGGAGGGAATGTGGA 1194
Query 1408 AGAGACAGTGTGCTTCAGTCCCTCACTGCAGTTACGGGTTGCGATATCGGTAACCTGGCA 1467
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 1195 AGAGACAGTGTGCTTCAGTCCCTCACCGCAGTTTCAGGTTGCGATATCGGTAACCTGGCA 1254
Query 1468 ACAGCGGGGGATGTGGAATGTCAGCATTTGCTCCGACTCCAGGATGGAGCGGAAGTGGTG 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACAGCGGGGGATGTGGAATGTCAGCATTTGCTCCGACTCCAGGATGGAGCGGAAGTGGTG 1314
Query 1528 AGAGGAAGAACAGAGTGGAGTAGTAAAACACCAACAACAACTTGGGGAACTGCACCGTAA 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGAGGAAGAACAGAGTGGAGTAGTAAAACACCAACAACAACTTGGGGAACTGCACCGTAA 1374
Query 1588 GAAAAAGAAAACACAACAA 1606
||||| || ||||||||
Sbjct 1375 -AAAAA-AACCCACAACAA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5