BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08520.1
Length=2549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311903 jgi|Araly1|311903|fgenesh1_pm.C_scaffold_1000683 2095 0.0
> Ahg311903 jgi|Araly1|311903|fgenesh1_pm.C_scaffold_1000683
Length=2319
Score = 2095 bits (1134), Expect = 0.0
Identities = 1255/1311 (96%), Gaps = 17/1311 (1%)
Strand=Plus/Plus
Query 127 ATGGCGATGACTCCGGTCGCGTCATCATCTCCAGTTTCAACCTGCAGACTCTTTCGCTGC 186
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1 ATGGCGATGACTCCGGTCGCGTCATCATCTCCAGTGTCAACGTGCAGGCTCTTTCGCTGC 60
Query 187 AATCTCCTC-CCTGATCTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAAACAG 245
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCTCCTCTCC-GATCTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAAACAG 119
Query 246 AATTGCCTCGTGCCGCTTCACTGTACGTGCCTCCGCGAATGCTACCGTCGAATCCCCTAA 305
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 AAGTGCGTCGTGCCGCTTCACTGTACGTGCCTCCGCGAATGCTACCGTCGAATCCCCAAA 179
Query 306 CGGTGTCCCTGCCTCCACATCAGATACGGATACGGAGACGGATACCACCTCCTATGGCCG 365
||||||||||||||| ||||||| | | || | || | |||||||||||||||||
Sbjct 180 CGGTGTCCCTGCCTCGACATCAG--A--G--AC-G-GA--G--ACCACCTCCTATGGCCG 227
Query 366 ACAGTTTTTCCCTTTGGCCGCAGTTGTTGGCCAGGAAGGCATAAAAACTGCTCTTTTACT 425
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 228 ACAGTTTTTCCCTTTGGCCGCAGTTGTTGGCCAGGAAGGCATCAAAACTGCTCTTTTACT 287
Query 426 TGGCGCGGTTGATCGTGAAATCGGAGGGATTGCCATTTCAGGTCGTAGAGGCACTGCAAA 485
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 288 TGGTGCTGTTGATCGTGAAATCGGAGGGATTGCTATTTCAGGTCGTAGAGGCACTGCAAA 347
Query 486 AACAGTCATGGCGCGAGGGCTTCATGAAATCCTCCCTCCTATTGAAGTTGTTGTAGGCTC 545
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 348 AACAGTCATGGCACGAGGGCTCCATGAAATCCTCCCTCCTATAGAAGTTGTTGTAGGCTC 407
Query 546 AATATCAAATGCTGACCCAGCTTGTCCAGATGAGTGGGAAGATGACTTAGATGAGCGCAT 605
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 408 AATATCAAATGCTGACCCGGCTTGCCCAGATGAGTGGGAAGACGACTTAGATGAGCGAAT 467
Query 606 AGAGTACAATGCTGACAATACCATTAAGACTGAGATTGTCAAATCTCCTTTCATTCAGAT 665
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AGAGTACAATGCTGATAATACCATTAAGACTGAGATTGTCAAATCTCCTTTCATTCAGAT 527
Query 666 TCCACTAGGAGTTACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAA 725
||| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TCCTCTTGGTGTCACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAA 587
Query 726 AAGGGGGACAACTGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AAGGGGGACAACTGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTA 647
Query 786 TGTTGATGAAATAAATCTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGAC 845
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGTTGATGAGATAAATCTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGAC 707
Query 846 GGATGGTGTTAATATAGTTGAAAGAGAAGGAATCAGCTTTAGGCACCCGTGCAAACCACT 905
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 708 GGACGGTGTTAATATAGTTGAAAGAGAAGGAATCAGTTTTAGGCACCCATGCAAACCACT 767
Query 906 TTTAATTGCAACCTATAACCCTGAAGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTTAATTGCAACCTATAACCCTGAAGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGT 827
Query 966 TGCCATTAATTTAAGTGCAGACCTACCTATGAGTTTTGAAGATCGTGTCGCAGCAGTTGG 1025
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 828 TGCCATTAATTTAAGTGCAGACCTTCCTATGAGTTTTGAAGATCGCGTCGCAGCAGTTGG 887
Query 1026 AATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAGAATGGTAAATGAAGAGAC 1085
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 888 AATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAAAATGGTAAATGAAGAGAC 947
Query 1086 AGAAACAGCAAAGACGCAGATTATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAG 1145
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 AGAGACAGCAAAGACGCAGATCATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAG 1007
Query 1146 TAGAGAGCAATTGAAGTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTCCAGGGACACCG 1205
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1008 TAGAGAGCAATTGAAGTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTTCAGGGACACCG 1067
Query 1206 CGCCGAATTGTATGCAGCTCGTGTGGCGAAGTGTTTAGCTGCAATTGAAGGACGAGAAAA 1265
||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 1068 CGCCGAATTGTATGCAGCTCGTGTGGCAAAGTGCTTAGCTGCAATTGAAGGAAGAGAAAA 1127
Query 1266 AGTCACAATCGATGACCTCAGAAAGGCCGTTGAGCTGGTCATTCTTCCTCGTTCATCACT 1325
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1128 AGTCACAATTGATGACCTCAGAAAGGCCGTTGAGCTGGTCATTCTTCCGCGTTCATCACT 1187
Query 1326 AGATGAGACTCC---ACCTGAACAACAAAACCAACCACCACCTCCTCCACCTCCTCCACA 1382
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1188 AGATGAGACTCCTCCACCTGAACAACAAAACCAACCACCACCTCCACCACCTCCTCCACA 1247
Query 1383 AAATAGCGAATCTGGagaagaagaaaatgaagaagaacaagaagaagaaga 1433
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AAATAGCGAATCTGGAGAAGAAGAAAATGAAGAAGAACAAGAAGAAGAAGA 1298
Score = 1683 bits (911), Expect = 0.0
Identities = 953/974 (98%), Gaps = 0/974 (0%)
Strand=Plus/Plus
Query 1436 aggatgaaagcaatgaagaaaatgaaaatgaGCAGCAACAGGACCAAATACCTGAAGAGT 1495
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1346 AGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAAGACCAAATACCTGACGAGT 1405
Query 1496 TTATATTTGACGCTGAGGGCGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAG 1555
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TTATATTTGACGCTGAGGGTGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAG 1465
Query 1556 CCCAGAAACGTCGGGGGAAAGCTGGCAGGGCGAAGAATGTCATATTCTCAGAAGATAGAG 1615
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1466 CCCAGAAACGTCGGGGGAAAGCTGGCAGAGCGAAGAATGTCATATTCTCAGAAGATAGAG 1525
Query 1616 GACGCTACATAAAGCCAATGCTTCCAAAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAA 1675
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 GACGCTATATAAAGCCAATGCTTCCAAAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAA 1585
Query 1676 CCCTTAGAGCAGCTGCACCATACCAGAAATTGCGCAGAGAGAAGGATATCTCAGGAACTA 1735
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1586 CCCTTAGAGCGGCTGCACCATACCAGAAATTGCGCAGAGAGAAGGATATTTCAGGAACTA 1645
Query 1736 GGAAAGTCTTTGTTGAGAAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAG 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 GGAAAGTCTTTGTTGAGAAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAG 1705
Query 1796 CCCTGGTTATCTTTGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACG 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 CCCTGGTTATCTTTGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACG 1765
Query 1856 CCAAAGGTGCTGCACTCAAACTACTGGCAGAGAGCTATACTAGCAGGGATCAGGTTTCGA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 CCAAAGGTGCTGCACTCAAACTACTGGCAGAGAGCTATACTAGCAGGGATCAGGTTTCGA 1825
Query 1916 TTATTCCTTTCCGAGGGGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATAGCAA 1975
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1826 TTATTCCTTTCCGAGGAGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATTGCAA 1885
Query 1976 TGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTT 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 TGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTT 1945
Query 2036 TAACAACGGCTGTAAGAGTAGGACTTAACGCAGAGAAGAGTGGTGATGTCGGGCGCATAA 2095
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1946 TAACAACGGCTGTAAGAGTTGGACTTAACGCAGAGAAGAGTGGTGATGTCGGGCGCATTA 2005
Query 2096 TGATTGTTGCGATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGG 2155
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 TGATTGTTGCAATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGG 2065
Query 2156 AGTCTATTGCCCCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGGATGAGATTCTGG 2215
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 ACTCTATCGCCCCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGGATGAGATTCTGG 2125
Query 2216 AAGTTGCTGGGAAGATATACAAGGCAGGGATGTCTCTTCTAGTGATTGATACCGAGAACA 2275
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2126 AAGTTGCTGGGAAGATATACAAGGCAGGGATGTCTCTTCTAGTGATTGATACTGAGAACA 2185
Query 2276 AGTTTGTTTCAACTGGTTTTGCAAAGGAGATCGCAAGAGTTGCTCAAGGAAAATATTATT 2335
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2186 AGTTTGTTTCAACTGGTTTTGCAAAGGAGATCGCTAGAGTTGCTCAAGGAAAATACTATT 2245
Query 2336 ACTTGCCAAATGCTTCGGATGCTGTAATCTCGGCCACCACTAGGGATGCACTATCTGATC 2395
||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||
Sbjct 2246 ACTTGCCAAATGCTTCGGACGCGGTCATCTCGGCCACCACGAGGGATGCACTATCTGATC 2305
Query 2396 TGAAGAATTCTTGA 2409
||||||||||||||
Sbjct 2306 TGAAGAATTCTTGA 2319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96101688135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5