BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08530.1 Length=939 Score E Sequences producing significant alignments: (Bits) Value Ahg311904 jgi|Araly1|311904|fgenesh1_pm.C_scaffold_1000684 632 1e-180 > Ahg311904 jgi|Araly1|311904|fgenesh1_pm.C_scaffold_1000684 Length=852 Score = 632 bits (342), Expect = 1e-180 Identities = 376/392 (96%), Gaps = 3/392 (1%) Strand=Plus/Plus Query 419 GGCCATGGGTAGAGCTGCAACTTCCTTTGCAAAGTTAGCTGACACAGCTCGCAAAGAACT 478 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 462 GGCCATGGGTAGAGCTGCAACTTCCTTTGCCAAGTTAGCCGACACAGCTCGCAAAGAACT 521 Query 479 CCCTAGTACATTGGCAGCGGTAAGGCTCTCTGGCATGGAAATAAGCGATCTTACTCTTGA 538 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct 522 CCCTAGTACATTGGCAGCCGTAAGGCTCTCCGGCATGGAAATAAGCGATCTTACTCTAGA 581 Query 539 ATTGAGCGATTTAAGCCAAGATATAACAGATGGGATAAACAAATCAGCTAAAGCGGTTCA 598 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 582 ATTGAGCGATTTAAGCCAAGATATAGCTGATGGGATAAACAAATCAGCTAAAGCGGTTCA 641 Query 599 AGCAGCTGAAGCTGGAATCAAACAGATTGGAACACTTGCAC-AGCAGCAAACTCTCTCAA 657 |||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 642 AGCAGCGGAAGCTGGAATCAAACAGATTGGAACACTTGCACAAG-AGCAAACTCTCTCAA 700 Query 658 TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTACAACCTGTTGTGGCTGGTGCAG 717 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 701 TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTGCAACCTGTTGTGGCTGGTGCGG 760 Query 718 CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACCAAGAGACTAATGAACATTATAACCG 777 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 761 CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACTAAGAGACTAATGAACATTATAACCG 820 Query 778 GAGGAAACAAGGATGAAGATT-AGACATTTAG 808 |||||||||||||||| |||| |||| ||||| Sbjct 821 GAGGAAACAAGGATGAGGATTTAGACGTTTAG 852 Score = 560 bits (303), Expect = 6e-159 Identities = 367/397 (92%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 27 ATGAAATCTCTCTGCTTCA-----T-TTCTACAGCTCCATTGATTCGTTCGCCTCCATTT 80 ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| Sbjct 1 ATGAAATCTCTCTGCTTCATTTCTTCTTCTACAGCTCCATTGATTCGTTCGTCTCCATTT 60 Query 81 C-TCGATCTTTCTCCAACAAGCTTGAATCGATTTACCCTTAAAATTCCAGCTTCTCTCTA 139 | || |||| || |||||||||||||||||||||||| || ||||||||||||||||| Sbjct 61 CTTC-CTCTTAATCGAACAAGCTTGAATCGATTTACCCTCAAGATTCCAGCTTCTCTCTA 119 Query 140 TGTATCTCATCCAACAAGATGCAGCATTTCAAACCCGTCGAGCTCTGAGGAATTGTTGAA 199 | |||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |||| | Sbjct 120 TTTATCCCATCCAACAAGATGCAGTATTTCAAACCCCTCGAGCTCGGAGGAATCGTTGGA 179 Query 200 TTCCAATGGTGGAATGTCTAGGGCATCGATTAGTGTCTTCGGAGGTACTTCCCTTAACAA 259 |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 180 TTCCAATGGTGGAATGTCTAGGGCATCGATCAGTGTCTTCGGAGGAACTTCGCTTAACAA 239 Query 260 TCTCAAGATGCAAGTGGGCAGTCCAATTTCTCTGCATTCAATCAATCCATTAGCAAAGCT 319 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 240 TCTAAAGATGCAAGTGGGCAGTCCAATTTCGCTGCATTCAATCAATCCATTAGCCAAGCT 299 Query 320 GAGTTTGAGTGATCAGGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC 379 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GAGTTTGAGTGATCAAGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC 359 Query 380 TTTTACAAGTCTTGTGATTACAGCTATTCCTACACTT 416 ||||||||||||||||||| ||||||||||||||||| Sbjct 360 TTTTACAAGTCTTGTGATTGCAGCTATTCCTACACTT 396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34844346138 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5