BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08530.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311904 jgi|Araly1|311904|fgenesh1_pm.C_scaffold_1000684 632 1e-180
> Ahg311904 jgi|Araly1|311904|fgenesh1_pm.C_scaffold_1000684
Length=852
Score = 632 bits (342), Expect = 1e-180
Identities = 376/392 (96%), Gaps = 3/392 (1%)
Strand=Plus/Plus
Query 419 GGCCATGGGTAGAGCTGCAACTTCCTTTGCAAAGTTAGCTGACACAGCTCGCAAAGAACT 478
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 462 GGCCATGGGTAGAGCTGCAACTTCCTTTGCCAAGTTAGCCGACACAGCTCGCAAAGAACT 521
Query 479 CCCTAGTACATTGGCAGCGGTAAGGCTCTCTGGCATGGAAATAAGCGATCTTACTCTTGA 538
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 522 CCCTAGTACATTGGCAGCCGTAAGGCTCTCCGGCATGGAAATAAGCGATCTTACTCTAGA 581
Query 539 ATTGAGCGATTTAAGCCAAGATATAACAGATGGGATAAACAAATCAGCTAAAGCGGTTCA 598
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 582 ATTGAGCGATTTAAGCCAAGATATAGCTGATGGGATAAACAAATCAGCTAAAGCGGTTCA 641
Query 599 AGCAGCTGAAGCTGGAATCAAACAGATTGGAACACTTGCAC-AGCAGCAAACTCTCTCAA 657
|||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 642 AGCAGCGGAAGCTGGAATCAAACAGATTGGAACACTTGCACAAG-AGCAAACTCTCTCAA 700
Query 658 TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTACAACCTGTTGTGGCTGGTGCAG 717
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 701 TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTGCAACCTGTTGTGGCTGGTGCGG 760
Query 718 CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACCAAGAGACTAATGAACATTATAACCG 777
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 761 CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACTAAGAGACTAATGAACATTATAACCG 820
Query 778 GAGGAAACAAGGATGAAGATT-AGACATTTAG 808
|||||||||||||||| |||| |||| |||||
Sbjct 821 GAGGAAACAAGGATGAGGATTTAGACGTTTAG 852
Score = 560 bits (303), Expect = 6e-159
Identities = 367/397 (92%), Gaps = 8/397 (2%)
Strand=Plus/Plus
Query 27 ATGAAATCTCTCTGCTTCA-----T-TTCTACAGCTCCATTGATTCGTTCGCCTCCATTT 80
||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAATCTCTCTGCTTCATTTCTTCTTCTACAGCTCCATTGATTCGTTCGTCTCCATTT 60
Query 81 C-TCGATCTTTCTCCAACAAGCTTGAATCGATTTACCCTTAAAATTCCAGCTTCTCTCTA 139
| || |||| || |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 61 CTTC-CTCTTAATCGAACAAGCTTGAATCGATTTACCCTCAAGATTCCAGCTTCTCTCTA 119
Query 140 TGTATCTCATCCAACAAGATGCAGCATTTCAAACCCGTCGAGCTCTGAGGAATTGTTGAA 199
| |||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |||| |
Sbjct 120 TTTATCCCATCCAACAAGATGCAGTATTTCAAACCCCTCGAGCTCGGAGGAATCGTTGGA 179
Query 200 TTCCAATGGTGGAATGTCTAGGGCATCGATTAGTGTCTTCGGAGGTACTTCCCTTAACAA 259
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 180 TTCCAATGGTGGAATGTCTAGGGCATCGATCAGTGTCTTCGGAGGAACTTCGCTTAACAA 239
Query 260 TCTCAAGATGCAAGTGGGCAGTCCAATTTCTCTGCATTCAATCAATCCATTAGCAAAGCT 319
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 240 TCTAAAGATGCAAGTGGGCAGTCCAATTTCGCTGCATTCAATCAATCCATTAGCCAAGCT 299
Query 320 GAGTTTGAGTGATCAGGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC 379
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGTTTGAGTGATCAAGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC 359
Query 380 TTTTACAAGTCTTGTGATTACAGCTATTCCTACACTT 416
||||||||||||||||||| |||||||||||||||||
Sbjct 360 TTTTACAAGTCTTGTGATTGCAGCTATTCCTACACTT 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5