BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08540.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470915 jgi|Araly1|470915|fgenesh2_kg.1__869__AT1G08540.1 3092 0.0
> Ahg470915 jgi|Araly1|470915|fgenesh2_kg.1__869__AT1G08540.1
Length=1944
Score = 3092 bits (1674), Expect = 0.0
Identities = 1845/1928 (96%), Gaps = 10/1928 (1%)
Strand=Plus/Plus
Query 6 CTCTTCTTCGTCTTCATCATCCGCGCATCACCAGTTTTTTCTCTCTCTCTACAAATCTTC 65
|||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||
Sbjct 1 CTCTTCTTCGTCTTCATCCGCC-ATCATCACCAG-TTTCTCTCTCTCTCTACAAATCTTC 58
Query 66 -TTAACGG-CCTT---TC-ATCAATGGTCAGCAGACTTAGCTTTCGAATATAGGCTAAGA 119
||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTTAACGGCCCTTGAATCAATCAATGGTCAGCAGACTTAGCTTTCGAATATAGGCTAAGA 118
Query 120 ACGAGCATGTCTTCTTGTCTTCTTCCTCAGTTCAAGTGCCCACCTGATTCTTTCTCTATT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACGAGCATGTCTTCTTGTCTTCTTCCTCAGTTCAAGTGCCCACCTGATTCTTTCTCTATT 178
Query 180 CACTTCCGAACCTCTTTCTGTGCCCCTAAACACAACAAGGGTTCAGTCTTCTTCCAACCG 239
|||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||||||
Sbjct 179 CACTTCCGAACCTCTTTCTGCGCCCCAAAACACAATAAGGGTTCACTCTTCTTCCAACCG 238
Query 240 CAATGTGCAGTATCCACTTCACCGGCGTTATTAACTTCTATGCTTGATGTCGCAAAGCTT 299
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 239 CAATGTGCAGTATCCACTTCACCGGCTTTATTAACTTCTATGCTTGATGTGGCAAAGCTT 298
Query 300 AGACTACCCTCTTTCGATACTGATTCGGATTCCCTTATATCAGACAGGCAGTGGACTTAT 359
|||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||
Sbjct 299 AGACTACCCTCTTTCGATACTGATTCAGATTCCCGAATATCAGACAGGCAATGGACTTAT 358
Query 360 ACAAGGCCCGATGGTCCTTCCACTGAGGCGAAGTATTTAGAAGCTTTAGCCTCTGAGACA 419
|||||| | |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 359 ACAAGGGCTGATGGTCCTTCCACTGAGGCAAAATATTTAGAAGCTTTAGCCTCTGAGACA 418
Query 420 CTTCTCACAAGCGATGAAGCAGTAGTTGTAGCAGCAGCAGCTGAAGCAGTCGCCCTTGCA 479
||||| ||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 419 CTTCTGACAAGTGATGAAGCCGTAGTTGCAGCTGCAGCAGCTGAAGCAGTCGCCCTTGCA 478
Query 480 AGAGCTGCTGTCAAAGTTGCCAAAGATGCAACATTATTTAAGAACAGTAACAACACGAAC 539
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 479 AGAGCTGCTGTCAAAGTTGCGAAAGATGCAACATTATTTAAGAACAGTAACAACACAAAC 538
Query 540 CTATTAACTTCGTCAACGGCCGACAAACGCTCCAAGTGGGACCAGTTTACTGAGAAGGAA 599
||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 CTATTAATTTCATCAATTGCCGACAAACGCTCTAAGTGGGACCAGTTTACTGAGAAGGAA 598
Query 600 CGTGCTGGCATATTGGGGCATCTAGCGGTTTCGGACAATGGAATTGTGAGTGATAAAATC 659
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 599 CGTGCTGGCATATTGGGACATCTCGCGGTTTCGGACAATGGAATCGTGAGTGATAAAATC 658
Query 660 ACTGCATCTGCCTCTAACAAAGAGTCTATTGGTGATTTAGAATCAGAAAAACAAGAAGAA 719
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 ACTGCACCTGCCTCTAACAAAGAGTCGCCTGGTGATTTAGAATCAGAAAAACAAGAAGAA 718
Query 720 GTTGAGCTTCTGGAGGAGCAACCTTCAGTGAGTTTAGCTGTGAGATCTACACGTCAAACT 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 GCTGAGCTTCTGGAGGAGCAACCTTCAGTGAGTTTAGCTGTGAGATCTACACGCCAAACT 778
Query 780 GAAAGGAAAGCTCGGAGGGCAAAAGGGTTAGAGAAAACTGCATCAGGTATTCCGTCTGTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAAAGGAAAGCTCGGAGGGCAAAAGGGTTAGAGAAAACTGCATCAGGTATTCCGTCTGTG 838
Query 840 AAGACTGGTTCGAGCCCTAAAAAGAAACGTCTTGTTGCGCAGGAAGTTGATCATAATGAT 899
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct 839 AAGACTGGTTCGAGCCCTAGAAAGAAACGTCTTGTTGCGCAAGAAGTTGACCATAATGAT 898
Query 900 CCTTTGCGTTATCTAAGAATGACAACAAGCAGTTCCAAGCTTCTCACTGTCAGAGAAGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCTTTGCGTTATCTAAGAATGACAACAAGCAGTTCCAAGCTTCTCACTGTCAGAGAAGAA 958
Query 960 CATGAGCTGTCGGCAGGAATACAGGACCTTCTGAAGTTAGAAAGACTTCAAACAGAGCTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATGAGCTGTCGGCAGGAATACAGGACCTTCTGAAGTTAGAAAGACTTCAAACAGAGCTT 1018
Query 1020 ACAGAGCGTAGTGGACGTCAGCCAACCTTTGCGCAGTGGGCTTCTGCTGCTGGAGTCGAT 1079
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACAGAGCGTTGTGGACGTCAGCCAACCTTTGCGCAGTGGGCTTCTGCTGCTGGAGTCGAT 1078
Query 1080 CAGAAATCATTAAGGCAACGTATACATCATGGCACACTATGCAAAGACAAAATGATCAAA 1139
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 CAAAAATCATTAAGGAAACGTATACATCATGGCACACTATGCAAAGACAAAATGATTAAA 1138
Query 1140 AGCAACATTCGACTCGTTATTTCGATTGCAAAGAATTATCAAGGAGCTGGGATGAACCTC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGCAACATTCGACTCGTTATTTCGATTGCAAAGAATTATCAAGGAGCTGGGATGAACCTC 1198
Query 1200 CAAGATCTTGTCCAGGAAGGGTGCAGAGGGCTTGTGAGGGGAGCAGAGAAGTTTGATGCT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAAGATCTTGTCCAGGAAGGGTGCAGAGGGCTTGTGAGGGGAGCAGAGAAGTTTGATGCT 1258
Query 1260 ACAAAGGGTTTTAAATTTTCGACTTACGCGCATTGGTGGATCAAGCAAGCTGTGCGGAAG 1319
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1259 ACAAAGGGTTTTAAATTTTCAACTTACGCTCATTGGTGGATCAAGCAAGCTGTGCGGAAA 1318
Query 1320 TCTCTCTCTGATCAGTCCAGAATGATAAGATTGCCTTTTCACATGGTGGAAGCAACATAT 1379
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1319 TCTCTTTCTGATCAGTCCAGAATGATAAGATTGCCTTTTCATATGGTGGAAGCAACATAT 1378
Query 1380 AGGGTGAAAGAGGCACGAAAGCAACTGTACAGTGAAACCGGTAAGCACCCAAAGAACGAA 1439
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1379 CGGGTGAAAGAGGCACGGAAGCAACTGTACAGTGAAACAGGTAAGCACCCAAAGAACGAA 1438
Query 1440 GAAATTGCAGAGGCAACAGGGCTGTCGATGAAGAGACTCATGGCGGTTCTACTCTCTCCT 1499
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1439 GAAATTGCAGAGGCAACAGGGCTATCGATGAAGAGGCTCATGGCGGTTCTACTCTCTCCT 1498
Query 1500 AAACCTCCGAGGTCGCTAGACCAGAAAATCGGAATGAATCAAAACCTCAAACCTTCGGAA 1559
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1499 AAACCACCGAGGTCGCTAGACCAGAAAATAGGAATGAATCAAAACCTCAAACCTTCGGAA 1558
Query 1560 GTGATAGCAGATCCAGAAGCAGTAACGTCAGAAGATATACTGATAAAGGAATTCATGAGG 1619
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1559 GTGATAGCAGATCCAGAAGCAGTAACCTCAGAAGATATATTGATAAAGGAATTCATGAGG 1618
Query 1620 CAGGACTTGGACAAAGTGTTGGACTCGTTGGGTACAAGGGAGAAACAAGTGATACGTTGG 1679
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1619 CAGGACTTGGACAAAGTGTTGGACTCGTTAGGTACGAGGGAGAAGCAAGTGATACGTTGG 1678
Query 1680 AGATTTGGGATGGAGGATGGGAGAATGAAGACGTTGCAAGAGATAGGAGAGATGATGGGA 1739
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1679 AGATTTGGGATGGAGGATGGGAGGATGAAGACGTTGCAAGAGATAGGAGAGATGATGGGA 1738
Query 1740 GTGAGCAGGGAGAGAGTAAGACAGATAGAGTCATCTGCATTCAGGAAACTAAAGAACAAG 1799
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1739 GTGAGCAGGGAGAGAGTGAGGCAGATAGAGTCGTCTGCATTCAGGAAACTAAAGAACAAG 1798
Query 1800 AAGAGAAACAACCATTTGCAGCAATACTTGGTTGCACAATCATAATTCTTTTTCTCTT-C 1858
||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 1799 AAGAGAAGCAACCATTTGCAGCAATACTTGGTTGCACAATCATAATTATTTTT-TCTTTC 1857
Query 1859 AATATGGAATGTTTTGTGCATAGAACCCACCCACCTGAGCATAACAAGCAGTAAATTATT 1918
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1858 AAAATGGAATGTTTTGTGCATAGAACCCACCCACCCGAGCATAACAAGCAGTAAATTATT 1917
Query 1919 ACTTTTTA 1926
| ||||||
Sbjct 1918 ATTTTTTA 1925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5