BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08550.1
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470916 jgi|Araly1|470916|fgenesh2_kg.1__870__AT1G08550.1 2473 0.0
> Ahg470916 jgi|Araly1|470916|fgenesh2_kg.1__870__AT1G08550.1
Length=1673
Score = 2473 bits (1339), Expect = 0.0
Identities = 1596/1713 (93%), Gaps = 46/1713 (3%)
Strand=Plus/Plus
Query 13 TGGAGAAAACAACCGCCTAGGACaaaaaaaaaTTGTGGGTAGAGGAGGAGGAGGAGGCTT 72
|||||||||||| |||||||||| ||||| ||||||| | |||||||||| |||||
Sbjct 1 TGGAGAAAACAAGCGCCTAGGAC----AAAAA-TGTGGGT--A-GAGGAGGAGGCGGCTT 52
Query 73 TGTTCACACACCACACGACGGAACATTCTCTTCCGAGTCTTATCCAAAGCAAAATCATAT 132
|||||||||||||||||||||||| |||||||| || |||||||||||| ||| |||||
Sbjct 53 CGTTCACACACCACACGACGGAACACTCTCTTCCAAGCCTTATCCAAAGC-AAAGCATAT 111
Query 133 TTTGCTTAAATAtcttcttctccggctctgtctctgtctctcttcttcCCGCGGAGCTTT 192
||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 112 TTTTCTTAAATATCTTCTTCT----C-C-GTCTCTGTCTCTCTTCTTCCCGCGGAGCTTT 165
Query 193 CAGTTTTTGTTTGGT-A-TTGCTTGG-TGTGGGGAAGATTAGATAGTGTGAAG--AATGG 247
|| | |||| ||||| | ||||||| | ||||||||||||| || || ||| |||||
Sbjct 166 CAATCTTTGCTTGGTAACATGCTTGGCT-TGGGGAAGATTAG--AGAGTAAAGCTAATGG 222
Query 248 CAGTAGCTACACATTGTTTCACTTCACCTTGTCATGACCGTATTCGATTTTTCTCAAGTG 307
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 223 CAGTAGCTACACATTGTTTCACTTCACCTTGTCATGACCGTATTCGGTTTTTCTCAA--G 280
Query 308 ATGATGGTATTGGTAGGCTTGGCATTACAAGAAAGAGGATCAATGGCACTTTCTTGCTCA 367
|||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 -TGAT-G-A-TGGTAGGCTTGGCATTACAAGAAAGAGGATCAATGGCACTTTCTTGCTCA 336
Query 368 AGATTTTACCTCCAATCCAAAGTGCTGATCTCAGAACAACTGGTGGGAGATCCTCACGTC 427
||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct 337 AGATTTTACCTCCAATCCAAA------A--T--G-----CTGGGGGGAGATCCTCACGCC 381
Query 428 CTTTATCTGCATTCAGGTCAGGATTCTCTAAGGGGATATTTGACATTGTGCCATTACCAT 487
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 382 CTATATCTGCATTCAGGTCAGGATTCTCTAAGGGGATATTTGACATTGTGGCAGTACCAT 441
Query 488 CAAAGAATGAGCTGAAAGAGCTGACCGCTCCGCTGTTGCTAAAACTCGTGGGTGTTTTAG 547
|||| ||||| || || ||||||||| |||| || |||||||||||||||||||||||||
Sbjct 442 CAAAAAATGAACTCAAGGAGCTGACCACTCCACTCTTGCTAAAACTCGTGGGTGTTTTAG 501
Query 548 CTTGCGCGTTCCTTATTGTTCCATCTGCAGATGCAGTTGATGCACTTAAAACTTGTGCAT 607
| ||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 502 CCTGCGCCTTCCTCATTGTTCCATCTGCAGACGCAGTTGATGCACTTAAGACTTGTGCAT 561
Query 608 GCTTATTGAAGGGATGCAGGATAGAACTCGCAAAGTGCATTGCCAACCCTGCCTGTGCAG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 562 GCTTATTGAAGGGATGCAGGATAGAACTCGCAAAGTGCATTGCCAACCCTGCCTGCGCAG 621
Query 668 CCAATGTCGCGTGCCTTCAGACCTGCAATAACCGTCCAGATGAAACCGAGTGCCAGATTA 727
|||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 622 CCAATGTCGCATGCCTCCAGACCTGTAATAACCGTCCAGATGAAACCGAGTGCCAGATCA 681
Query 728 AATGTGGGGATCTGTTT-GAGAACAGTGTTGTTGATGAGTTCAACGAGTGTGCTGTGTCG 786
|||| |||||||| ||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 682 AATGCGGGGATCT-TTTCGAAAACAGTGTAGTTGATGAGTTCAACGAGTGTGCTGTGTCG 740
Query 787 AGAAAAAAGTGTGTTCCTAGAAAATCTGATCTCGGAGAATTTCCTGCCCCAGACCCTTCT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGAAAAAAGTGTGTTCCTAGAAAATCTGATCTCGGAGAATTTCCTGCCCCAGACCCTTCT 800
Query 847 GTTCTTGTACAGAACTTCAACATCTCGGACTTTAACGGGAAGTGGTACATTACAAGTGGC 906
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 801 GTTCTTGTCCAGAACTTCAACATCTCCGACTTTAACGGGAAGTGGTACATTACAAGTGGC 860
Query 907 TTGAATCCAACCTTTGATGCCTTCGACTGCCAGCTGCATGAGTTCCACACAGAAGGTGAC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TTGAATCCAACCTTTGATGCCTTCGACTGCCAGCTGCATGAGTTCCACACAGAAGGTGAC 920
Query 967 AACAAGCTTGTTGGAAACATCTCTTGGAGAATAAAGACCCTAGACAGTGGATTCTTTACT 1026
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 921 AACAAGCTTGTTGGAAACATCTCCTGGAGAATAAAGACCCTAGACAGTGGATTCTTTACT 980
Query 1027 AGGTCAGCCGTACAAAAATTCGTGCAAGATCCTAACCAACCTGGTGTTCTCTACAATCAT 1086
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AGGTCAGCTGTACAAAAATTCGTGCAAGATCCTAACCAACCTGGTGTTCTCTACAATCAT 1040
Query 1087 GACAACGAGTACCTTCACTATCAAGATGACTGGTATATCCTGTCATCAAAGATAGAGAAT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GACAACGAGTACCTTCACTATCAAGATGACTGGTATATCCTGTCATCAAAGATAGAGAAT 1100
Query 1147 AAACCTGAAGACTATATATTTGTATACTACCGTGGGCGAAACGATGCTTGGGATGGATAT 1206
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1101 AAACCTGAAGACTATATATTTGTATACTACCGTGGACGAAACGATGCTTGGGATGGATAT 1160
Query 1207 GGTGGTGCAGTTGTATACACGAGAAGTTCTGTATTACCCAATAGCATTATACCAGAACTC 1266
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1161 GGTGGTGCAGTTGTATACACGAGAAGTTCTGTATTACCCAATAGCATTATACCAGAGCTA 1220
Query 1267 GAAAAAGCAGCAAAAAGCATAGGCAGAGACTTCAGCACATTCATTAGAACGGATAACACA 1326
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1221 GAAAAGGCAGCAAAAAGCATAGGCAGAGACTTCAGTACATTCATTAGAACAGATAACACA 1280
Query 1327 TGTGGTCCTGAACCTGCGCTCGTGGAGAGAATTGAGAAGACAGTGgaagaaggtgaaagg 1386
||||||||||||||| | ||||| || ||||||||||||||||| |||||||| ||||||
Sbjct 1281 TGTGGTCCTGAACCTCCACTCGTAGAAAGAATTGAGAAGACAGTAGAAGAAGGGGAAAGG 1340
Query 1387 ataatcgtaaaagaggttgaagagatagaagaagaggtagagaaggaagtggagaaggTC 1446
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1341 ATAATCGTAAAAGAGGTTGAAGAGATAGAAGAGGAAGTAGAGAAGGAAGTGGAGAAAGTT 1400
Query 1447 GGTAGGACTGAGATGACCTTGTTCCAGAGATTGGCTGAAGGATTTAATGAACTGAAGCAA 1506
|||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1401 GGTAAGACTGAGATGTCCTTGTTCCAGAGATTGGCTGAAGGATTTAACGAACTGAAGCAA 1460
Query 1507 GACGAGGAGAATTTCGTGAGAGAGTTAAGTAAAGAAGAGATGGAGTTTTTGGATGAGATC 1566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1461 GACGAGGAGAATTTCGTGAGAGAGTTCAGTAAAGAAGAGATGGAGTTTTTGGATGAGATC 1520
Query 1567 AAAATGGAAGCAAGTGAGGTTGAAAAATTGTTTGGGAAAGCTTTGCCAATCAGGAAGGTC 1626
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 1521 AAAATGGAAGCAAGTGAGATTGAAAAATTGTTTGGTAAAGCTTTGCCAATTAGGAAGGTC 1580
Query 1627 AGGTAGAAACAAGAACCACCATTGTTGTACAAACTATATTATACATACTGTGTTCGGTTC 1686
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1581 AGGTAGAACCAAGAACCACCATTGTTGTCCAAACTATATTATACATACTGTGTTCAGTTC 1640
Query 1687 ATATAAAGTAATATTTTTGTACACAGTCATCAT 1719
||||||||||||||||||||||||| |||||||
Sbjct 1641 ATATAAAGTAATATTTTTGTACACATTCATCAT 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5