BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08560.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470918 jgi|Araly1|470918|fgenesh2_kg.1__872__AT1G08560.1 1548 0.0
> Ahg470918 jgi|Araly1|470918|fgenesh2_kg.1__872__AT1G08560.1
Length=976
Score = 1548 bits (838), Expect = 0.0
Identities = 932/978 (95%), Gaps = 4/978 (0%)
Strand=Plus/Plus
Query 104 GTGAAAAAGATGAACGACTTGATGACGAAATCGTTTATGAGTTACGTTGACTTGAAAAAA 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGAAAAAGATGAACGACTTGATGACGAAATCGTTTATGAGTTACGTTGACTTGAAAAAA 60
Query 164 GCAGCGATGAAGGATATGGAAGCAGGACCTGACTTTGATCTTGAGATGGCTTCTACGAAA 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCAGCGATGAAGGATATGGAAGCAGGACCTGACTTTGATCTTGAGATGGCTTCGACGAAA 120
Query 224 GCAGACAAGATGGATGAGAATCTGTCATCTTTCTTAGAAGAAGCAGAGTATGTGAAAGCA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAGACAAGATGGATGAGAATCTGTCATCTTTCTTAGAAGAAGCAGAGTATGTGAAAGCA 180
Query 284 GAGATGGGTTTGATTAGTGAGACGCTGGCTCGGATCGAACAGTACCATGAAGAGAGTAAA 343
||||||||| ||||||||||||| ||||||||||| || |||||| | ||||||||||||
Sbjct 181 GAGATGGGTCTGATTAGTGAGACACTGGCTCGGATTGAGCAGTACAACGAAGAGAGTAAA 240
Query 344 GGTGTTCACAAGGCAGAGTCTGTGAAGTCTCTTCGTAACAAGATCTCTAACGAGATTGTG 403
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGTGTGCACAAGGCAGAGTCTGTGAAGTCTCTTCGTAACAAGATCTCTAATGAGATTGTG 300
Query 404 TCTGGTTTGAGGAAGGCGAAATCGATTAAGTCGAAGCTGGAAGAGATGGATAAAGCCAAC 463
|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TCTGGTCTGAGGAAAGCAAAATCGATAAAGTCGAAGCTGGAAGAGATGGATAAAGCCAAC 360
Query 464 AAGGAGATTAAAAGGCTCTCTGGGACTCCGGTTTATAGGAGCAGAACCGCTGTGACTAAT 523
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 AAGGAGATTAAGAGGCTCTCTGGGACTCCGGTTTACAGGAGCAGAACCGCTGTGACTAAC 420
Query 524 GGGCTGAGGAAGAAACTT-AAGGAAGTGATGATGGAGTTTCAGGGGCTGAGGCAAAAGAT 582
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GGGCTGAGGAAGAAG-TTGAAGGAAGTGATGATGGAGTTTCAAGGGCTGAGGCAAAAGAT 479
Query 583 GATGAGTGAGTACAAGGA-GACTGTTGAGAGAAGGTACTTCACTGTCACTGGAGAACATG 641
||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GATGACTGAGTACAAGGACG-CTGTTGAGAGAAGGTACTTCACTGTGACTGGAGAACATC 538
Query 642 CTAATGATGAGATGATTGAGAAGATCATCACTGATAACGCTGGAGGTGAAGAGTTTCTCA 701
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTGATGAAGCGATGATTGAGAAGATCATCACTGATAACGCTGGAGGTGAAGAGTTTCTCA 598
Query 702 CGCGAGCAATTCAGGAACATGGTAAAGGAAAGGTCTTGGAAACTGTGGTTGAGATTCAAG 761
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 599 CGCGAGCAATCCAGGAACATGGTAAAGGAAAAATCTTGGAAACTGTGGTTGAGATTCAAG 658
Query 762 ACAGGTATGATGCAGCAAAGGAGATTGAGAAGAGTCTGTTGGAGCTTCACCAAGTGTTTC 821
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATAGGTATGATGCAGCCAAGGAGATTGAGAAGAGTCTGTTGGAGCTTCACCAAGTGTTTC 718
Query 822 TTGATATGGCTGTGATGGTTGAATCGCAAGGTGAACAGATGGACGAGATCGAGCATCATG 881
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 719 TTGATATGGCTGTGATGGTTGAATCGCAAGGTGAACAGATGGATGAGATTGAGCATCATG 778
Query 882 TGATTAATGCGAGCCATTACGTGGCTGATGGAGCTAATGAGCTGAAGACTGCAAAGAGTC 941
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 779 TGATAAATGCGAGCCATTACGTGGCGGATGGGGCTAATGAGCTGAAGACTGCAAAGAGTC 838
Query 942 ATCAGAGAAACAGCAGAAAATGGATGTGCATTGGTATCATTGTGCTGCTTTTGATCATTC 1001
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 ATCAGAGAAACAGCAGGAAATGGATGTGCATTGGTATCATTGTGTTGCTTTTGATCATTC 898
Query 1002 TCATTGTTGTCATCCCCATCATTACCAGTTTCAGCTCTTCTTGAGATACTGGCTATGTTC 1061
|||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 899 TCATTGTTGTCATCCCCATCATAACCAGTTTCAGCTCTTCTTGAGATGCTTACTATGTTC 958
Query 1062 ACTCCTTTTGTTTTGTTT 1079
||||||| || |||||||
Sbjct 959 ACTCCTTGTGGTTTGTTT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5