BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08570.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470920 jgi|Araly1|470920|fgenesh2_kg.1__874__AT1G08570.1 2017 0.0
Ahg905234 jgi|Araly1|905234|Al_scaffold_0003_2362 363 3e-99
Ahg345747 jgi|Araly1|345747|fgenesh1_pg.C_scaffold_4002089 346 3e-94
> Ahg470920 jgi|Araly1|470920|fgenesh2_kg.1__874__AT1G08570.1
Length=1372
Score = 2017 bits (1092), Expect = 0.0
Identities = 1265/1345 (94%), Gaps = 25/1345 (2%)
Strand=Plus/Plus
Query 42 GAAAGCGAAACTTCGCTGGCGACTAAAGATTGCTGAGAAGACACGTCGTCTCTGTGAGAA 101
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 GAAAACGAAACTTCGCTGGCGACTAAAGATTGCTGAGAAGACACGTCGTCTCTGTGAGAA 76
Query 102 CTTTTTCTTTTTCTTCTGGTATATTCT-G-GAGACAGATATTGT-TTTTTCTTCTGATT- 157
| ||||||||||||||||||| ||||| | |||| ||||||||| ||||||||| | ||
Sbjct 77 C-TTTTCTTTTTCTTCTGGTAAATTCTGGAGAGAGAGATATTGTATTTTTCTTC-G-TTC 133
Query 158 AGAGAATAATATGACGGAAGTGATTAGCAAAACGAGTTTGTTCTTAGGAGCTTGT-GG-- 214
|||||| |||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 134 GGAGAAT--TATGGCGGAAGTGATTAGCAAAACGAGTTTGTTCACCGGAGCTTGTGGGAA 191
Query 215 TAATCATCACCGTGTTGATGATTTCTCTTTCTCTCCGGTGAGTTTTGGTGGGTTTGGTTT 274
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 192 TCATCATCACCGTGTTGATGATTTCTCTTTGTCCCCGGTGAGTTTTGGTGGGTTTGGTCT 251
Query 275 GAAAAAGAGTTTCTCTTGTCTGAAGCTTAAGAGTCAGAAGCCTCTTAGAAGTGTATTTTA 334
|||||||||||||||||||| |||||| |||| ||| |||||||||| ||||| ||| |
Sbjct 252 GAAAAAGAGTTTCTCTTGTCAGAAGCTGAAGAATCAAAAGCCTCTTACAAGTGAATTCCA 311
Query 335 CGGAAAACAGATCGTTTTCGGAGATTCTCAAGACGAGAGCTTCAGAA-GATCATCA-GCT 392
|||||||||||||||||||| ||| ||||||||||||||||||||| || | | | | |
Sbjct 312 TGGAAAACAGATCGTTTTCGGTGATGCTCAAGACGAGAGCTTCAGAAGGAGC-TTATG-T 369
Query 393 ATCACAGCT-CAGACAACTTTGAGGATTGGGACAGCTCAGAAGTGGTGGGAGAAAGGTCT 451
| | | | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 370 GT-AAATTTGCAGACAACTTTGAGGATTGGAACAGCTCAGAAGTGGTGGGAGAAAGGTCT 428
Query 452 GAAAGATAACATGAGAGAGATCTCTTCAGCTCAAGAGCTCGTTGATTCTCTTACTAACGC 511
|||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 429 GAAAGAAAACATGAGAGAGATCTCTTCAGCTCAAGAACTCGTTGACTCTCTCACTAACGC 488
Query 512 TGGTGATAAGCTTGTTGTTGTTGATTTCTTCTCACCTGGCTGTGGTGGCTGCAAGGCTCT 571
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 489 TGGTGATAAGCTTGTTGTTGTTGATTTCTTCTCACCTGGCTGTGGCGGCTGCAAGGCTCT 548
Query 572 CCATCCTAAGATATGTCAGTTTGCAGAGATGAACCCGGATGTGCAGTTTCTTCAGGTGAA 631
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 549 TCATCCTAAGATATGTCAGTTGGCAGAGATGAACCCTGATGTGCAGTTTCTTCAGGTGAA 608
Query 632 TTACGAGGAGCATAAGTCCATGTGTTATAGTCTTGGTGTCCATGTTCTCCCTTTTTTCCG 691
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 609 TTACGAGGAGCATAAGTCCATGTGTTATAGCCTCGGTGTCCATGTTCTCCCTTTTTTCCG 668
Query 692 ATTCTACCGTGGCTCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACCAATGCCACGATCAA 751
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATTCTACCGAGGCTCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACCAATGCCACGATCAA 728
Query 752 GAAATTCAGAGATGCCTTGGCAAAGCATGGTCCAGATAGGTGCAGCCTCGGACCGACCAA 811
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 729 GAAATTCAGAGATGCATTGGCAAAGCATGGTCCAGATAGGTGCAGCCTTGGACCGACTAA 788
Query 812 AGGCCTTGAAGAGAAAGAGCTTGTGGCACTTGCAGCCAACAAAGAACTCAACTTTACTTA 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AGGCCTTGAAGAGAAAGAGCTTGTGGCACTTGCAGCCAACAAAGAACTCAACTTTACTTA 848
Query 872 CACACCAAAGCCTGTACCAGTTGAGAAAGAAGCAGCCACTCCTGATTCAAACCCAAGTCT 931
|||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 849 CACACCAAAGCCTGTACCGGTTGAGAAAGAAGCAGCCACTCCTAAATCAAACCCAAGTCT 908
Query 932 CCCTGTTCCTCTTCCTTCGATGAGCTCCAATGACGAAAAAACATTGGTCTCCGCAGGGAG 991
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 909 CCCTGTTCCTCTTCCTTCGATGAGCGCCAATGACGAAAAAACATTGGTCTCCGCAGGGAG 968
Query 992 ATGAGA-CTGAATAAACATTTCCCTGTATAGTTTGCGTGATAGTAGTAGTAG---CAGCA 1047
|||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 969 ATGAGATC-GAATAAACATTTCCCTGTACAGTTTGCGTGATAGTAGTAGTAGTAGCAGCA 1027
Query 1048 GCTGGATATATTGCAGTACCTAAAGATGTCAGTTCTCGGAGCAGCCAGCCGGTTTAGTGG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GCTGGATATATTGCAGTACCTAAAGATGTCAGTTCTCGGAGCAGCCAGCCGGTTTAGTGG 1087
Query 1108 GGTTTAGttttttttCGGGTCCCCTGAGCAAAATCGGTTCTTGGCCTCTGGGTTTACCTA 1167
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1088 GGTTTAGTTTTTTTTTGGGTCCCCTGAGCAAAATCGGTTCTTGGCATCTGGGTTTACCTA 1147
Query 1168 GAGCAAAACCAGTTCCGATGGTTACTTGAGTTTTGCTCAGTTCTTATGGGATTG-GAGTG 1226
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1148 GAGCAAAACCAGTTCCGATGGTTACTTGAGTTTTGCTCAGTTCTTATGGGATTGAGAGTG 1207
Query 1227 GAAGGTCGTGCGCTCGGCAGCATGGAAGCTTTCTCCTTTCAATCAGCTTCAGTAGAgttt 1286
|||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 1208 GAAGGTCGTGCGCTCGGCGGCATGGAAGCTTTCTCCTCTCAATCAGCTTCGGTAGAGTTT 1267
Query 1287 tggtttctttgtttgttttttatttgctttAAGAATTTAATGTAAATAAAAATCCAATGA 1346
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1268 TGGTTTCTTTGTTTGTTTTT-ATTTGCTTTAAGATTTTAATGTAAATAAAAATCCAATGA 1326
Query 1347 GGATTATCATACAATGTCATGAAGG 1371
|||||||||||||||||||||||||
Sbjct 1327 GGATTATCATACAATGTCATGAAGG 1351
> Ahg905234 jgi|Araly1|905234|Al_scaffold_0003_2362
Length=369
Score = 363 bits (196), Expect = 3e-99
Identities = 210/217 (97%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 719 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCCTTGGCAAAGCA 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 102 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCATTGGCAAAGCA 161
Query 779 TGGTCCAGATAGGTGCAGCCTCGGACCGACCAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 838
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 162 TGGTCCAGATAGGTGCAGCCTTGGACGGACTAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 221
Query 839 ACTTGCAGCCAACAAAGAACTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAA 898
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 222 ACTTGCAGCCAACAAAGATCTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAA 281
Query 899 AGAAGCAGCCACTCCTGATTCAAACCCAAGTCTCCCT 935
|||||||||||||||| ||| ||||||||||||||||
Sbjct 282 AGAAGCAGCCACTCCTAATTTAAACCCAAGTCTCCCT 318
> Ahg345747 jgi|Araly1|345747|fgenesh1_pg.C_scaffold_4002089
Length=369
Score = 346 bits (187), Expect = 3e-94
Identities = 207/217 (95%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 719 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCCTTGGCAAAGCA 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 102 TTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCATTGGCAAAGCA 161
Query 779 TGGTCCAGATAGGTGCAGCCTCGGACCGACCAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 838
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 162 TGGTCCAGATAGGTGCAGCCTTGGACGGACTAAAGGCCTTGAAGAGAAAGAGCTTGTGGC 221
Query 839 ACTTGCAGCCAACAAAGAACTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAA 898
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 222 ACTTGCAGCCAACAAAGATCTCAACTTTACTTACAGACCAAAGCATGTACCAGTTGAGAA 281
Query 899 AGAAGCAGCCACTCCTGATTCAAACCCAAGTCTCCCT 935
|||||||||||||||| ||| ||||||||| ||||||
Sbjct 282 AGAAGCAGCCACTCCTAATTTAAACCCAAGCCTCCCT 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5