BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G08580.1

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919605 jgi|Araly1|919605|scaffold_100886.1                        610    4e-174


> Ahg919605 jgi|Araly1|919605|scaffold_100886.1
Length=413

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 381/406 (94%), Gaps = 1/406 (0%)
 Strand=Plus/Plus

Query  41   GTAG-AGTAGTAAGATGGCCAAGTACAACGAGATTGCGAAGAAGAAGAGAGAGGCTAAAG  99
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  8    GTAGTAGTAGTAAGATGGCCAAGTACAACGAGATCGCGAAGAAGAAGAGAGAGGCTAAAG  67

Query  100  CCGATAGAAAACGAGCCATTCACGGCGATCCTCTCACCAATAAATTGAAGACCAGAACTC  159
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68   CTGATAGAAAACGAGCCATTCACGGCGATCCTCTCACCAATAAATTGAAGACCAGAACTC  127

Query  160  CGGTCCCCTCCGTCTCCGGCAAACGTCAGAGAAAGCTCCTTCGCAAATGGCGCAGAGAGC  219
            ||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||
Sbjct  128  CGGTCCCCTCCGTCTCCGGTAAACGTCAGAGAAAACTCCTCCGCAAATGGCGCCGAGAGC  187

Query  220  AGAAAGATATGGTGGAGAAGGGTCTTGTTACTATGGAAGATGTGGAGATGGCTTCTGCTC  279
            ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  188  AGAAAGAGATGGTGGATAAGGGTCTTGTTACAATGGAAGATGTGGAGATGGCTTCTGCTC  247

Query  280  AAGCTGCATCAGAAGACTCCAAGAAATCCCCCAGAAAATTTAGCGTTAAGAAGAGCTTGA  339
            ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct  248  AAGCTGCATCAGAAGACTCCAAGAAATCCCCCAAAAAATTCAGCGTAAAGAAGAGCTTGA  307

Query  340  AGTTGAACAAACTAAATAATAAAGGCAAAAAGAAGAAAAACCAGAAAGCCAGTGGTGAAA  399
            || | || |||||||| || ||||||||||||||||||| ||||||||||||||||||| 
Sbjct  308  AGCTCAATAAACTAAAGAACAAAGGCAAAAAGAAGAAAAGCCAGAAAGCCAGTGGTGAAG  367

Query  400  AATCTGCTGATTGTATGCTAGAATGAGTGTCGTGTATACCTGTAAA  445
             |||||| ||||||||||||||||||||||| |||| ||||| |||
Sbjct  368  CATCTGCCGATTGTATGCTAGAATGAGTGTCCTGTAAACCTGGAAA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23521839789


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5