BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08590.1
Length=3444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470923 jgi|Araly1|470923|fgenesh2_kg.1__877__AT1G08590.1 5228 0.0
> Ahg470923 jgi|Araly1|470923|fgenesh2_kg.1__877__AT1G08590.1
Length=3413
Score = 5228 bits (2831), Expect = 0.0
Identities = 3247/3445 (94%), Gaps = 39/3445 (1%)
Strand=Plus/Plus
Query 1 AACTTCGCTTGGGGACCTTCAATCTCAGTTGCACAAAAATGCCATAAAACTAGCCAAAAA 60
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AACTTCGCTTGAGGACCTTCAATCTCAGTTGCACAAAAATGCCATAAAATTAGCCAAAAA 60
Query 61 GTGAAGAAATAGAGGAGAAAAATGGCGATCCC-TC-GA-CTTTTCTTCCTCTTCTATTAC 117
|||||| || |||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 61 GTGAAG-AA-AGAGGAGAAAAATGGCGATCCCTTCTCACCTTTTCTTCCTCTTCTATTAC 118
Query 118 ATTGGTTTCGCTCTTTTCCCTTTTGTTTCTTCTGAAACATTTCAAAACTCCGAACAAGAG 177
|||||||| ||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 119 ATTGGTTTTGCTCTTTTCTCTTTTGTTTCTTCTGAAACATTTCAAGGTTATGAACAAGAG 178
Query 178 ATCTTGTTGGCCTTCAAGTCAGACCTTTTTGATCCTTCAAATAATCTCCAAGATTGGAAG 237
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 ATCTTGTTGGCCATCAAGTCAGACCTGTTTGATCCTTCAAATAATCTCCAAGATTGGAAG 238
Query 238 AGACCTGAGAATGCCACAACATTTTCTGAGTTGGTTCATTGTCATTGGACAGGAGTTCAC 297
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 CGACCTGAGAATGCCACAACATTTTCTGAGTTGGTTCATTGTCATTGGACCGGAGTTCAC 298
Query 298 TGTGATGCAAATGGCTATGTGGCTAAGCTTCTTCTCTCCAACATGAATCTCAGCGGAAAC 357
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGCGATGCAAATGGCTCTGTGGCTAAGCTTCTTCTCTCCAACATGAATCTCAGCGGAAAC 358
Query 358 GTGTCAGATCAGATTCAGAGCTTCCCTTCTCTGCAAGCCCTTGATCTCAGCAATAACGCA 417
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGTCAAATCAGATTCAGAGCTTCCCTTCTCTGCAAGCCCTTGATCTCAGCAATAACGCA 418
Query 418 TTTGAGTCTTCTCTTCCTAAATCTCTTTCTAATCTCACGTCTTTGAAGGTCATT-GATGT 476
||||||||||||||||||||||||||||||| ||||||||| ||||||||| || || ||
Sbjct 419 TTTGAGTCTTCTCTTCCTAAATCTCTTTCTAGTCTCACGTCCTTGAAGGTC-TTCGACGT 477
Query 477 GAGTGTGAACAGCTTCTTTGGAACCTTCCCTTATGGTCTAGGAATGGCAACTGGTCTTAC 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 478 GAGTGTGAACAGCTTCTTTGGAACCTTCCCTTATGGTCTAGGAATGGCCACTGGTCTCAC 537
Query 537 ACACGTCAATGCCTCAAGCAACAATTTTTCGGGGTTTCTACCTGAAGATCTTGGCAACGC 596
|||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 538 ACACGTCAATGCCTCAAGCAACAATTTTTCTGGGTTTCTCCCTGAAGATCTCAGCAACGC 597
Query 597 AACTACACTTGAGGTTTTGGACTTTCGAGGAGGTTACTTCGAGGGCTCAGTGCCTTCTTC 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 AACTACACTTGAGGTTTTGGACTTTCGAGGAGGTTACTTCGAGGGCTCGGTGCCTTCTTC 657
Query 657 TTTCAAGAATCTCAAGAATCTGAAGTTTCTCGGTCTTTCGGGTAACAACTTTGGTGGAAA 716
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 CTTCAAGAATCTCAAGAATCTGAAGTTTCTCGGTCTTTCGGGTAATAACTTTGGTGGAAA 717
Query 717 GGTACCGAAGGTGATTGGTGAGCTCTCTTCCTTGGAGACCATTATTCTTGGTTACAATGG 776
| |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 718 GCTACCAAAGGTGATTGGTGAGCTCTCATCCTTGGAGACCATCATTCTTGGTTACAATGG 777
Query 777 CTTCATGGGTGAGATTCCAGAAGAGTTTGGGAAATTGACGCGCCTTCAGTACCTTGATTT 836
||||| |||||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 778 CTTCACGGGTGAGATTCCAGCAGAGTTTGGGAACCTGACGCACCTTCAGTACCTTGATTT 837
Query 837 GGCTGTTGGAAACCTTACAGGCCAGATTCCATCTTCTTTGGGGCAGCTGAAACAACTTAC 896
||||||||| |||||||| |||||||||||||||||||||||| |||| ||||| |||||
Sbjct 838 GGCTGTTGGGAACCTTACGGGCCAGATTCCATCTTCTTTGGGGAAGCTTAAACAGCTTAC 897
Query 897 AACAGTTTATCTCTACCAGAACCGTCTCACAGGGAA-ACTTCCTCGAGAACTTGGTGGTA 955
|||||||| ||||||||||| |||||||| ||||| | | |||||||| || |||| ||
Sbjct 898 GACAGTTTACCTCTACCAGAATCGTCTCACGGGGAAGA-TCCCTCGAGAGCTCGGTGATA 956
Query 956 TGACTTCTCTTGTGTTTCTTGATCTGTCTGATAACCAGATCACAGGAGAAATACCTATGG 1015
||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 957 TGACTTCTCTTGTGTTTCTTGATCTGTCTGATAACCAAATTACAGGACAAATACCTATGG 1016
Query 1016 AAGTAGGTGAGTTGAAGAATCTGCAGCTTCTAAATTTGATGAGGAATCAACTCACGGGAA 1075
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1017 AAGTAGCTGAGTTGAAGAATCTGCAGCTTCTGAATTTGATGAGGAATCAACTCACGGGAA 1076
Query 1076 TCATTCCGTCAAAAATTGCTGAATTACCAAACCTTGAGGTTCTTGAGCTGTGGCAGAACT 1135
|||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1077 TCATTCCGTCGAAGATTGCTGAGTTACCAAATCTTGAGGTTCTTGAGCTGTGGCAGAACT 1136
Query 1136 CTCTCATGGGTTCATTACCGGTGCATCTCGGCAAAAATTCCCCATTGAAGTGGTTAGACG 1195
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 CTCTGATGGGTTCATTACCGGTGCATCTCGGCAAGAATTCCCCATTGAAGTGGTTAGACG 1196
Query 1196 TCTCATCAAACAAGCTTTCAGGAGATATACCATCAGGATTGTGCTATTCCAGAAACCTCA 1255
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1197 TCTCATCAAACAAGCTTTCCGGAGAAATACCATCAGGATTGTGCTATTCCAGAAACCTCA 1256
Query 1256 CAAAGCTCATTCTCTTCAACAACTCATTCTCAGGTCAGATTCCGGAGGAAATCTTCTCAT 1315
|||| |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1257 CAAAACTCATTCTCTTCGACAACTCATTCTCAGGTCAGATTCCAGAGGAAATTTTCTCAT 1316
Query 1316 GTCCGACTTTAGTTCGTGTTCGAATCCAGAAAAATCACATTTCCGGATCTATACCAGCTG 1375
|||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1317 GTCCGACTTTAGTTCGCGTTCGAATCCAGAAAAATCTCATTTCCGGATCAATACCAGCTG 1376
Query 1376 GTTCAGGTGACTTACCAATGCTTCAGCATCTAGAGCTCGCAAAAAACAACCTCACCGGTA 1435
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1377 GTTCAGGTGACTTACCAATGCTTCAGCATCTAGAACTCGCAAAAAACAACCTCACCGGTA 1436
Query 1436 AAATTCCAGATGATATAGCCTTATCCACATCACTCTCATTTATAGACATATCATTTAATC 1495
||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 1437 AAATTCCAGATGATATAGCCTTATCTACATCACTCTCATTCATAGACATATCATATAATC 1496
Query 1496 ATCTCTCATCCCTATCTTCCTCCATTTTCTCAAGTCCTAATCTTCAAACCTTCATTGCCT 1555
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1497 ACCTCTCATCCCTATCTTCCTCCATTTTCTCAAGTCCTAACCTTCAAACCTTCATCGCCT 1556
Query 1556 CACATAACAACTTTGCCGGAAAAATTCCTAACCAGATTCAAGATCGTCCATCTTTGTCTG 1615
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1557 CACATAACAACTTTGCCGGAAAAATACCTAACCAGATTCAAGATCGTCCATCTTTGTCTG 1616
Query 1616 TCCTCGATCTTTCCTTCAACCATTTCTCAGGTGGAATCCCAGAAAGGATCGCTTCTTTTG 1675
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1617 TCCTCGATCTTTCCTTCAACCATTTCTCAGGTGAAATCCCAGAAAGGATTGCTTCTTTTG 1676
Query 1676 AAAAACTTGTGAGTCTAAATCTCAAGAGCAACCAATTGGTTGGAGAAATCCCTAAGGCAT 1735
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1677 AAAAACTTGTGAGTCTAAATCTCAAGAGCAACCAATTGGTTGGAAAAATCCCTGAGGCAT 1736
Query 1736 TAGCCGGGATGCACATGTTAGCTGTTCTTGATCTCTCAAACAACTCTTTGACGGGGAATA 1795
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1737 TAGCTGGGATGCACATGTTAGCTGTTCTTGACCTCTCAAACAACTCTTTAACGGGGAATA 1796
Query 1796 TACCAGCGGACTTGGGAGCTTCTCCAACACTGGAGATGTTAAACGTGTCATTCAACAAAC 1855
|||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1797 TACCAGTGAACTTGGGAGCTTCCCCAACACTGGAGATGCTAAACGTGTCATTCAACAAAC 1856
Query 1856 TCGAC-GGACCCATTCCTTCAAACATGCTGTTTGCAGCCATAGACCCAAAAGACCTCGTG 1914
|| || ||||| |||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1857 TC-ACAGGACCTGTTCCTTCAAACATGTTGTTTGCAGCCATAAACCCAAAAGACCTCATG 1915
Query 1915 GGAAACAATGGCTTATGCGGTGGAGTTCTACCACCTTGCTCTAAGAGCCTAGCTTTGTCA 1974
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1916 GGAAACGATGGCTTATGCGGTGGAGTTCTATCACCTTGCCCTAAGAGCCTAGCTTTGTCA 1975
Query 1975 GCAAAAGGCCGAAATCCAGGGAGAATTCACGTGAATCACGCAGTCTTCGGGTTCATTGTT 2034
||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1976 GCAAAAGGCAGAAATCCAGGGAGAATTCACGTGAATCATGCAATCTTCGGGTTCATTGTT 2035
Query 2035 GGAACTTCAGTCATCGTGGCTATGGGGATGATGTTCTTGGCAGGGAGATGGATATACACA 2094
||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||
Sbjct 2036 GGAACTTCAGTCATCGTATCTCTGGGAATGATGTTCTTGGCAGGGAGATGGGTATACACA 2095
Query 2095 AGATGGGATCTTTACAGCAACTTTGCTAGAGAGTATATATTCTGCAAGAAACCTCGGGAG 2154
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 2096 AGATGGGATCTTTACAGCAACTTTGCCAAAGAGTATTTATTCTGCAAGAAACCTCGGGAG 2155
Query 2155 GAATGGCCATGGAGACTCGTGGCTTTCCAGAGACTGTGCTTCACTGCAGGAGACATCTTA 2214
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2156 GAGTGGCCATGGAGACTCGTGGCTTTCCAGAGACTGTGTTTCACTGCAGGAGACATCTTA 2215
Query 2215 TCACATATCAAAGAATCAAACATCATTGGAATGGGAGCCATAGGGATTGTTTACAAAGCA 2274
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2216 TCACATATCAAAGAATCAAACATCATTGGAATGGGAGCCATGGGGATCGTTTACAAAGCA 2275
Query 2275 GAAGTCATGAGACGGCCATTACTCACTGTAGCTGTGAAAAAACTGTGGAGATCACCATCA 2334
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2276 GAAGTCATGAGACGGCCATTACTCACAGTAGCTGTGAAAAAACTGTGGAGATCACCATCA 2335
Query 2335 CCACAAAATGATATCGAAGATCATCATCAAGAAGAAGATGAAGAGGACGACATACTCAGA 2394
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2336 CCACAGAATGATATCGAAGATCATCATCAAGAAGAAGAAGAAGAGGACGACATACTCAGA 2395
Query 2395 GAAGTGAACCTACTTGGTGGTCTACGACATAGAAACATTGTGAAGATTCTAGGTTACGTT 2454
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 2396 GAAGTGAACCTACTTGGTGGTCTCCGACATAGAAACATTGTGAAGATTCTAGGTTACATT 2455
Query 2455 CACAACGAGAGAGAAGTGATGATGGTATACGAGTACATGCCCAATGGAAACCTAGGAACT 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2456 CACAACGAGAGAGAAGTGATGATGGTATACGAGTACATGCCCAATGGAAACCTAGGAACT 2515
Query 2515 GCTTTGCATTCCAAAGATGAGAAATTCTTACTAAGAGATTGGCTCTCACGATACAATGTC 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 GCTTTGCATTCCAAAGATGAGAAATTCTTACTAAGAGATTGGCTCTCACGATACAATGTC 2575
Query 2575 GCCGTCGGAGTCGTTCAAGGTCTCAATTACTTGCACAACGATTGCTATCCTCCGATCATT 2634
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2576 GCCGTCGGAGTCGTTCAAGGTCTCAATTACTTGCACAACGATTGCTATCCGCCGATCATT 2635
Query 2635 CACAGAGACATCAAGTCTAATAACATCCTCCTCGATTCAAACCTTGAAGCGAGGATAGCA 2694
|||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 2636 CACAGAGACATCAAATCTAACAACATTCTCCTCGATTCAAACCTCGAAGCGAGGATAGCT 2695
Query 2695 GATTTCGGATTGGCGAAGATGATGCTTCATAAGAACGAGACCGTTTCTATGGTGGCTGGA 2754
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2696 GATTTCGGATTGGCGAAGATGATGCTTCATAAGAACGAGACTGTTTCTATGGTGGCTGGA 2755
Query 2755 TCTTACGGGTATATAGCGCCGGAGTACGGATACACACTGAAGATTGACGAAAAGAGTGAT 2814
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2756 TCTTACGGGTATATAGCGCCGGAGTACGGATACACACTGAAGATTGACGAGAAGAGCGAT 2815
Query 2815 ATATACAGTCTAGGCGTTGTGCTTCTGGAATTGGTGACTGGGAAAATGCCGATAGATCCT 2874
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2816 ATATACAGTTTAGGCGTTGTGCTTCTGGAATTGGTGACTGGGAAAATGCCGATAGATCCT 2875
Query 2875 TCGTTTGAGGATTCGATTGACGTGGTTGAGTGGATTCGGAGGAAGGTGAAGAAGAACGAG 2934
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2876 TCGTTTGAGGAATCGATTGACGTAGTTGAGTGGATTCGGAGGAAGGTGAAGAAGAACGAG 2935
Query 2935 AGCTTGGAAGAAGTGATCGACGCGAGCATCGCCGGAGATTGTAAACACGTGATCGAAGAG 2994
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2936 AGCTTGGAAGAAGTGATTGATGCGAGCATCGCCGGAGATTGTAAACACGTGATCGAAGAA 2995
Query 2995 ATGCTCCTGGCACTGCGAATCGCTCTTCTCTGCACCGCGAAGCTACCGAAGGATAGACCA 3054
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 2996 ATGCTTCTGGCACTGCGAATCGCTCTTCTCTGCACTGCGAAGCTCCCGAAGGATAGGCCA 3055
Query 3055 TCGATTAGAGACGTCATCACAATGCTCGCGGAGGCGAAGCCACGCCGGAAAAGTGTTTGC 3114
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 3056 TCGATTAGAGATGTCATCACGATGCTTGCGGAGGCGAAGCCACGCCGGAAAAGTGTTTGC 3115
Query 3115 CAAGTCGCCGGGGATTTGCCGATTTTCAGAAACTCGCCAGTGGTAGGGCTGATTTAGATG 3174
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3116 CAAGTCGCCGGAGATTTGCCGATTTTCAGAAACTCGCCAGTGGTAGGGCTGATTTAGATG 3175
Query 3175 ACGGAGGCGATAAGGGTAGTTTTGTCATTTCATCAGCTGGGGCTAATTTTAACATTGGGC 3234
|||||||||||||||||| ||||| ||||||| |||||||| || ||
Sbjct 3176 ACGGAGGCGATAAGGGTATTTTTGGCATTTCAGCAGCTGGG---AA------CA------ 3220
Query 3235 TAACAAGTTAACTTTGGGCTGAATCAAAAACCCATGTTTTCAAATCTGATGGGTGCACTA 3294
| |||||| |||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 3221 -A----GTTAACCTTGGACTGAATCAACAACCCATGTTTTCAAATCTGATCAGTGCACTA 3275
Query 3295 AAGCCCATTGAACCAAATGACATGATTCAAAATTGTAATAGGCCCCTTGTT-GATGGCTG 3353
| ||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 3276 A-GCC-ATTGAACCGAATGACATGATTCAAAATTGTAATAGGTCCCTTGTTCGATGGCTG 3333
Query 3354 ATCCAGCAAATTGTAGTTACCAGAGGCTaaaaaaaTAATAAATAAAGATTTTAATTAGTT 3413
|||| |||||||||||||||| ||||||||| || ||||||||||||||||||| ||
Sbjct 3334 ATCCTGCAAATTGTAGTTACCGGAGGCTAAACAAGTAATAAATAAAGATTTTAAATAA-- 3391
Query 3414 TTGTTTTAATGGAATATTAATCTTT 3438
||| ||||| ||||||||||||
Sbjct 3392 --GTTA-AATGGGATATTAATCTTT 3413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130042726941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5