BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08640.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470932 jgi|Araly1|470932|fgenesh2_kg.1__886__AT1G08640.1 1653 0.0
> Ahg470932 jgi|Araly1|470932|fgenesh2_kg.1__886__AT1G08640.1
Length=1087
Score = 1653 bits (895), Expect = 0.0
Identities = 1032/1096 (94%), Gaps = 18/1096 (2%)
Strand=Plus/Plus
Query 29 CTTCTAGTTTCCTTTTAACCCTACTAGAGCTCTGCTCTGCCATGGCTCCCGCACTATCTA 88
||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 CTTTTAGTTTCCTTTTAGCCCTATTAGAGCTCTGCTCTGCCATGGCTCTCGCACTATCTA 60
Query 89 CTTCTTGCTCCTCCGTCATGGCTTTCTCAACATCAAACGCGCTTCGTTACCATCATCCTC 148
||| ||||| |||| |||||||||| |||| ||| |||||||||||||||| ||||||||
Sbjct 61 CTTGTTGCTGCTCCATCATGGCTTTTTCAATATCCAACGCGCTTCGTTACCCTCATCCTC 120
Query 149 AAATTTCTCTCAGGAACTCTCTTCGCGCTCCCAAATCGCCTTCTTTTGTCAGGCTTCCCC 208
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 121 AAATTGCTCTCAGGAACTCTCTTCGAACTCCCAAATCGCCTTCTTTTGTCAGGCTTCCTC 180
Query 209 TCGGAAA-GGTGTTACAGAGCAGGATTGTGATACGTGCTGCTTCGTCTGCGGCTGGTAAT 267
|| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 TC-GAAAGGGTGTTGCAGAGCAGGATTGTGATACGTGCTGCTTCCTCTGCGGCTGGAAAT 239
Query 268 CCACAGTCTGATGCTGACTTTAATCCGTATGAGGTTCTTGGTGTTAACCCTATAGAGGGA 327
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 240 CCACAGTCTGATGCTGACTTTAACCCGTATGAGGTTCTTGGTGTTAACCCTATTGAGGGA 299
Query 328 TTTGACAAGATCAAGCAAACTTATGGAAGGAAACTTAAAGATGCTCAGAGGAGCGGTGAT 387
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 TTTGACAAGATCAAGCAAACTTATGGAAGAAAACTTAAAGATGCTCAGAGGAGCGGTGAT 359
Query 388 GAAGCCACTGCTGCTCTACTTGAGAAGGCATATGATAAGCTCATGTATGCCCAGTTGATG 447
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 GAAGCCACTGCTGCTCTACTTGAGAAAGCATATGATAAGCTCATGTATGCCCAGTTGATG 419
Query 448 AATAGGAAAAAGGGTGTGACTTTTGGTTCGTTTAAGGTTTCCAAGGACATTAAATATGCT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATAGGAAAAAGGGTGTGACTTTTGGTTCGTTTAAGGTTTCCAAGGACATTAAATATGCT 479
Query 508 GATAAGCAGCCCATTATACCATGGGGTCCAAGGTTTTCCAGGTCCTCCAAG-AATGATAT 566
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 GATAAGCAGCCCATTATACCATGGGGTCCAAGGTTTTCCAGGTCCTCC-AGAAATGATAT 538
Query 567 GTTGATCAACCTAGCAATATCAGTTGTGTTTAGTGCATGGATTGCGATAAAACGTAATGT 626
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTGATCAACCTAGCGATATCAGTTGTGTTTAGTGCATGGATTGCGATAAAACGTAATGT 598
Query 627 TGAATACAAACCGCTGCAGTTCATGTCTTTTGTATTTGTTTACAGAATTTTTGAGAAATT 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGAATACAAACCGCTGCAGTTCATGTCTTTTGTATTTGTTTACAGAATTTTTGAGAAATT 658
Query 687 AAAATCCTTTGAAGCACCTTCATCTCCAATATATAACGAGGAAGGCGAAGAAAGTGGACG 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAAATCCTTTGAAGCACCTTCATCTCCAATATATAACGAGGAAGGCGAAGAAAGTGGACG 718
Query 747 GGGATTGAGAATGGGAAAGAGGCTTCTTCGTTCTCTTTCCTTAGTTTTTGGCTCTATACT 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGGATTGAGAATGGGAAAGAGGCTTCTTCGTTCTCTTTCCTTAGTTTTTGGCTCTATACT 778
Query 807 CT-TAGCATCTTTGGCATACACTGGGTTCTTAAATGGCATCGAGTACATGGGCTACTCCA 865
| | ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 779 -TGTGGCATCTTTGGCCTACACTGGGATCTTAAATGGCATCGAGTACATGGGCAACTCCA 837
Query 866 TACCCATGGTTCTTTACAACAACCAGGAACTTATAGTGACGGCGTCATCGGCTTTCATGC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TACCCATGGTTCTTTACAACAACCAGGAACTTATAGTGACGGCGTCATCGGCTTTCATGC 897
Query 926 TCTATGTTATAGCGTCGTTTTACAGATAATGCGAGAGT-CC-ACAGGAGAATTGGTCAGT 983
|||||||||||||||||| |||||||||||||||||| || | |||||| ||| | |
Sbjct 898 TCTATGTTATAGCGTCGTATTACAGATAATGCGAGAGAGCCCAGAGGAGAGTTGAAAAAT 957
Query 984 TAGAAGCTTTTGGAGAAGTTATGCTGTATTATAGGATGTTGCTG-G-G-AGATGAAAA-G 1039
||||||||||||||||||||||||||||| | | ||| |||| | | |||| |||| |
Sbjct 958 TAGAAGCTTTTGGAGAAGTTATGCTGTAT-A--GCCTGTGGCTGTGAGGAGAT-AAAATG 1013
Query 1040 TTTATTTTCTACAGAGAGATGGGGTTATCTTTATAACCTTTCTTTTGTGTGGAAAATCAA 1099
|||||| ||| | ||||||||||||| ||||||||| ||| |||||||||||||||| |
Sbjct 1014 TTTATTGTCTTCGGAGAGATGGGGTTTTCTTTATAAT-TTT-TTTTGTGTGGAAAATCGA 1071
Query 1100 GTAAATTTTGCAAGAG 1115
|||||||| |||||||
Sbjct 1072 GTAAATTTGGCAAGAG 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5