BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08650.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919613 jgi|Araly1|919613|scaffold_100894.1 1415 0.0
Ahg481363 jgi|Araly1|481363|fgenesh2_kg.4__423__AT2G25090.1 58.4 1e-07
> Ahg919613 jgi|Araly1|919613|scaffold_100894.1
Length=895
Score = 1415 bits (766), Expect = 0.0
Identities = 851/893 (95%), Gaps = 2/893 (0%)
Strand=Plus/Plus
Query 34 ATTAAGAAAGTGATATTATGACTTGCAGCCAAACACTCGGAAACAACAACACCAACAAAT 93
||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5 ATTAA-ATAGTGATATTATGACTTGCAGCCAAACACTCGGAAACAACAACGCCAACAAAT 63
Query 94 ACCAGATCTGCGAGGAGATCGGCCGTGGCCGTTTCGGCACCGTCTCTCGCGTCTACGCTC 153
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 64 ACCAGATCTGCGAGGAGATCGGCCGTGGCCGTTTCGGCACCGTCACTCGCGTCTACGCTC 123
Query 154 CGGCCACCGGTGATTTCTTCGCTTGCAAAACCATCGACAAAGCCTCTCTCTCCGACGACC 213
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 124 CGGCCACCGGTGATTTCTTCGCTTGCAAAACCATCGACAAGGCCTCCCTCTCCGACGACC 183
Query 214 TTGACCGTGCCTGTCTCGACAACGAGCCTAAGCTCATGGCTCTCTTGTCCTATCACCCTA 273
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 184 TTGACCGCGCCTGTCTCGATAACGAGCCTAAGCTCATGGCTCTCTTGTCCTATCACCCAA 243
Query 274 ACATCGTTCAAATCCATGATCTCATCGACACTGATTCGACTCTCTCCATCTTCATGGAGC 333
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 244 ACATCGTCCAAATCCATGATCTCATCGACACTGATTCGACTCTCTCCATTTTCATGGAGC 303
Query 334 TCGTCCATCCCTCTGTTTCGATCTACGACCGTCTCGTCTCTTCTGGAACCTTCTTTGAGC 393
| || |||||||||| ||||||||||||||||| || ||||||||||| |||| ||||
Sbjct 304 TTGTTGATCCCTCTGTGTCGATCTACGACCGTCTGGTTTCTTCTGGAACATTCTCTGAGT 363
Query 394 CTCAGACGGCGTCGTTCGCTAAACAGATTCTCCAGGCGCTTTCGCATTGTCACCGATACG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTCAGACGGCGTCGTTCGCTAAACAGATTCTCCAGGCGCTTTCGCATTGTCACCGATACG 423
Query 454 GCGTCGTTCACAGGGATATTAAACCGGAGAACATTCTGGTAGATCTACGAAACGATACGG 513
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 GTGTCGTTCACAGGGATATTAAACCGGAGAACATTTTGGTAGATCTACGAAACGATACGG 483
Query 514 TTAAGATCTGCGATTTCGGTTCAGGGATTTGGTTAGGTGAGGGAGAGACCACCGAAGGAG 573
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 484 TTAAGATCTGCGATTTTGGTTCAGGGATTTGGTTAGGTGACGGAGAGACCACCGAAGGAG 543
Query 574 TCGTCGGAACGCCGTATTACGTGGCGCCGGAGGTTTTAATGGGATATTCTTACGGAGAGA 633
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 544 TCGTCGGGACGCCGTATTACGTGGCGCCGGAGGTTTTAATGGGATGTTCTTACGGCGAGA 603
Query 634 AGGTCGATCTATGGAGCGCCGGCGTCGTTTTGTACACGATGCTCGCTGGAACTCCACCGT 693
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 604 AGGTCGATCTCTGGAGCGCCGGCGTCGTTTTGTACACGATGCTCGCAGGAACTCCACCGT 663
Query 694 TTTACGGCGAGACAGCTGAAGAGATATTCGAAGCGGTACTCAGAGGAAATCTCCGTTTTC 753
||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 664 TTTACGGGGAGACTGCGGAGGAGATATTCGAAGCGGTTCTCAGAGGAAACCTCCGTTTTC 723
Query 754 CGACGAAGATATTCCGGGGGGTTTCATCTATGGCTAAAGATTTCCTAAGGAAATTGATAT 813
|||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 724 CGACTAAGATATTCCGGGGAGTTTCATCGATGGCTAAAGATTTCCTAAGGAAGTTGATAT 783
Query 814 GCAAAGATGCTTCTAGAAGATTCTCAGCCGAACAAGCATTAAGGCACCCATGGATCCAAA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GCAAAGATGCTTCTAGAAGATTCTCAGCCGAACAAGCATTAAGGCACCCATGGATCCAAA 843
Query 874 GAGCAGGAGAAACAGAGGAGAGATTCATCTAGAAGATTCTCTCGGAGAAATAA 926
|||||||||||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct 844 GAGCAGGAGAAACAGAGGAGAGATTCATGTAGAAGAATCTCTCGGAGAA-TAA 895
> Ahg481363 jgi|Araly1|481363|fgenesh2_kg.4__423__AT2G25090.1
Length=1510
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 578 CGGAACGCCGTATTACGTGGCGCCGGAGGTTTTA 611
||| ||||||||||||||||||||||||||||||
Sbjct 585 CGGGACGCCGTATTACGTGGCGCCGGAGGTTTTA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5