BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08660.1
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470934 jgi|Araly1|470934|fgenesh2_kg.1__888__AT1G08660.1 2667 0.0
> Ahg470934 jgi|Araly1|470934|fgenesh2_kg.1__888__AT1G08660.1
Length=1596
Score = 2667 bits (1444), Expect = 0.0
Identities = 1557/1610 (97%), Gaps = 14/1610 (1%)
Strand=Plus/Plus
Query 8 TATCCTCCGGCGGCATCAGTTTTGGAGTTTCTTGGATCATCACACTCACCTGCTTCGTTA 67
||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||
Sbjct 1 TATCCTCCGGCGGCATCAG-TTT---G-TTCTTGG---ATCACACTCACCTGCTTCGTT- 51
Query 68 CTCTTCCCTTGGATTGGATTGGATTGGATTCGCTCTTTCATGGTTGAAGAATGAGATCTC 127
| || | | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 C-GTT-GC-T--ATTCCCTTGGATTGGATTCGCTCTTTCATGGTTGAAGAATGAGATCTC 106
Query 128 ACCAAGCTGGCCGCAAACTTCCGCTTCTTCAACTTCTCGGCTGCGTCGCTGTTTTCTCCG 187
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 107 ACCAAGCTGGCCGCAAACTGCCGCTTCTTCAACTTCTCGGCTGCGTCGCAGTTTTCTCCG 166
Query 188 TTTTCGTTTTCACCATCCAATCTTCCTTCTTCGCAGATAATAATCGTAAACTAGATCTTC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TTTTCGTTTTCACCATCCAATCTTCCTTCTTCGCAGATAATAATCGTAAACTAGATCTTC 226
Query 248 AGCCGGAAGATATCCAGATCTTGTCAGATTTTCAGTCCAGCGTTCAACAGTGCGTGGCTA 307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 227 AGCCGGAAGATATCCAGATCTTGTCAGATTTTCAGTCCAGCGTTCAACAGTGCGTGGCGA 286
Query 308 ACAGAGGGCTTGGACTCTCTGCCCATATTATCGATCACTGTAATCTTATCCTCAAGTTCC 367
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 287 ACAGAGGGCTTGGACTCTCTGCCCATATTATTGATCACTGTAATCTGATCCTTAAGTTCC 346
Query 368 CTGAAGGCACTAACAGTACTTGGTACAATGCACAATTTAAAGTTTTTGAAGCATTGGAGT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CTGAAGGCACTAACAGTACTTGGTACAATGCACAATTTAAAGTTTTTGAAGCATTGGAGT 406
Query 428 TCAAGTATAATGTTTGTGAGGCAGTTCTCTTATGGGAGCAGTACCGCAATATGACTACAG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TCAAGTATAATGTTTGTGAGGCAGTTCTCTTATGGGAGCAGTACCGCAATATGACTACAG 466
Query 488 TATTGACAAGAGAATACCTCGATGTACGCCCTGATGGGTGGTTGGACTACGCAGCTATGA 547
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 467 TATTGACAAGAGAATACCTCGACGTACGCCCTGATGGGTGGTTGGACTATGCAGCTATGA 526
Query 548 GAATTGCACAGTTGGGAGCTGATAAGTGTTATAATCGTACATTGTGTGAAGAGCATCTTA 607
||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 527 GAATTGCACAGCTGGGAGCTGAGAAGTGTTATAATCGTACATTGTGTGAGGAGCATCTTA 586
Query 608 ATGTGATTCTTCCAGCGAAGCCTCCTTTTCACCCACGGCAGTTTCATAAATGCGCTGTTG 667
|||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 587 ATGTAATCCTTCCAGCAAAGCCTCCTTTCCACCCACGGCAGTTTCATAAATGCGCTGTTG 646
Query 668 TTGGAAATTCTGGAGATCTGTTAAAAACAGAGTTCGGAGAAGAGATTGACAGTCATGATG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TTGGAAATTCTGGAGATCTGTTAAAAACAGAGTTCGGAGAAGAGATTGACAGTCATGATG 706
Query 728 CTGTATTTCGAGACAATGAAGCTCCTGTCAATGAGAAGTATGCCAAGTACGTAGGAGTGA 787
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 707 CTGTATTTCGAGACAATGAAGCTCCTGTCAATAAGAAGTATGCCAAGTACGTAGGAGTGA 766
Query 788 AAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATG 826
Query 848 GGTCTGACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAATGA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GGTCTGACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAATGA 886
Query 908 TAAAGCGTATACCAAACCCTGTTTATCTTTTCCAAGGAATTGTCCTACGCAGAGGTGCCA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TAAAGCGTATACCAAACCCTGTTTATCTTTTCCAAGGAATTGTCCTACGCAGAGGTGCCA 946
Query 968 AAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATAT 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATAT 1006
Query 1028 ATGGTTTCACTGTTGATCCTGGATACACAGAGTGGACGCGTTACTTTTCCACGCCAAGGA 1087
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1007 ATGGTTTCACCGTTGATCCTGGATACACAGAGTGGACACGTTACTTTTCAACGCCAAGGA 1066
Query 1088 AAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTAA 1147
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 AAGGACACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTAA 1126
Query 1148 TACGGATCCATTCTCCCATGAGATCCGAGAGAAAGGAGGACTGGTCAAGTGTGCCAAGTC 1207
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1127 TACGGATTCATTCTCCCATGAGATCCCAGAGAAAGGAGGACTGGTCAAGTGTGCCAAGTC 1186
Query 1208 GTGAAATGATAAGCAGAGCTCACACAGCTGCCTTACGCCTACAAAGGAGCCAACAGCCAA 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1187 GTGAAATGATAAGCAGAGCTCACACAGCTGCCTTACGCCTACAAAGGAGCCAACAACCAA 1246
Query 1268 CTAGTTCGAAGAGGGATGGGTCAGGACAATTCGGTAATTGCAAGGTGTGGGGCGATGCAG 1327
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1247 CTAGTTTGAAGAGGGATGGGTCAGGACAATTCGGTAATTGCAAGGTGTGGGGCGACGCAG 1306
Query 1328 ACCCTACAAAAGGACCTGTCTCGGGATCTCCGGACATGAGTGAGACCAGGAAGAAGTCAA 1387
|||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1307 ACCCAACAAAAGGACCCGTCTCGGGATCTCCGGACATGAGTGAGATCAGGAAGAAGTCAA 1366
Query 1388 ATTACAAGAAATGGGAAGTGATGCCGTTTAGGAGCTTAAGAAAGGAAGCTAGGGATCACT 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 ATTACAAGAAATGGGAAGTGATGCCGTTTAGGAGCTTAAGAAAGGAAGCTAGGGATCACT 1426
Query 1448 ATATCCAAATGAAAGGCGTGTCACAGTATAAGATGGATGGAAATAAGCTGGACGATCTGG 1507
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1427 ATATCCAAATGAAAGGTGTGTCACAGTATAAGATGGATGGAAATAAACTGGACGATCTGG 1486
Query 1508 TTTGCGTGAGGCATCCACTGAAATTAGATACGTAAAtttttttATCATCTTGTAAAGGTT 1567
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1487 TTTGCGTGAGGCATCCACTGAAATTAGAGGCGTAAATTTTTTTATCATCTTGTAAAGTTT 1546
Query 1568 CAATTTCAATAACATCTTGAGCTTACAAAGTAAAGGTTCCTACATTTCAC 1617
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CAATTTCAATACCATCTTGAGCTTACAAAGTAAAGGTTCCTACATTTCAC 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60601579795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5