BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08670.1 Length=791 Score E Sequences producing significant alignments: (Bits) Value Ahg334155 jgi|Araly1|334155|fgenesh1_pg.C_scaffold_1000720 1114 0.0 > Ahg334155 jgi|Araly1|334155|fgenesh1_pg.C_scaffold_1000720 Length=702 Score = 1114 bits (603), Expect = 0.0 Identities = 670/703 (95%), Gaps = 2/703 (0%) Strand=Plus/Plus Query 23 ATGTCTAAGCTTATGCAGAATCCGGTGTTACATGAATTGAAGAAGCAAGCTTCTTTCTTC 82 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGTCTAATCTTATGCAGAATCCGGTGTTACATGAACTGAAGAAGCAAGCTTCTTTCTTC 60 Query 83 ATCAAGGAAAAGATCAAGACTGCTCGTCTTGCTGTAACCGATGTTACTGCAGAAGAACTA 142 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 61 ATCAAGGAAAAGATCAAGACTGCTCGTCTCGCTGTAACCGATGTCACTGCAGAAGAACTA 120 Query 143 TTGACAGAAGAAGTTACGGGCAGCGATCACTCATCCATAGACTCACGCTCCATGGCGGCC 202 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 121 TTGACAGAAGAAGTTACGGGCAGCGATCACTCATCCATAGACTCACGTTCCATGGCGGTC 180 Query 203 ATAACAAGAGTTTCTTTTGAGGTTGATCAATTCCAAAGAATCGTGAAGATTCTACGTCAA 262 |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 ATAACAAGAGCTTCTTTTGAGGTTGATCAATTCCAAAGAATCGTGAAGATTTTACGTCAA 240 Query 263 AGAATGGTAGTGTTTGATAGAAAGGAATGGCGCGGCATGTGCAACACGTTGTCAATGTTG 322 ||||||||| |||||||||||| ||||||| | ||||||| ||||||||||||||||||| Sbjct 241 AGAATGGTAATGTTTGATAGAAGGGAATGGAGGGGCATGTACAACACGTTGTCAATGTTG 300 Query 323 AACCACTTGTTGCTCAATGGCCCACTAAGTGTATTCAGTGAGTTTCAACATGAGAGAGCT 382 ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || | Sbjct 301 AACCACTTGTTGCTCAATGGCCCACTAAGTGTATTCAATGAATTTCAACATGAGA-AGGT 359 Query 383 A-TTATTGAAGATGCTATAAAGATGGAGTGGATTGATGAGAGAGGGTTCGATTGTGGTCT 441 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 AATTATTGAAGATGCCATAAAGATCGAGTGGATTGATGAGAGAGGGTTCGATTGTGGTCT 419 Query 442 AAAGGTTCGAAACATAGCCGAGAAAGTACTAAGATTGCTTGAAGACGACATGTTTCTTAA 501 ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 420 AAAAGTTCGAAACATAGCCGAGAAAGTATTAAGATTGCTTGAAGATGACATGTTTCTTAA 479 Query 502 AGATGAGCGAGAAAGAAACCGTAAGCAAAGCATTGGTCGGATCACAGGATTTGGAAACTC 561 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 480 ATATGAGCGAGAAAGAAACCGTAAGCAAAGCATTGGTCGGATCACAGGATTCGGAAACTC 539 Query 562 GAGTTTTGTCATACATTCTGAAACGAACAACGGACGAGACGGCTCGTTAATGTTGAGTAA 621 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 540 GAGTTTCACCATACATTCTGAAACGAACAACGGACGAGATGGCTCGTTAATGTTGAGTAA 599 Query 622 CCATCAAACTTGTGAAAATGATTGTATCGCGGATGATCATCCATTCGTCGAAAATGAGCA 681 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 600 CCATCAAACTTGTGAAAATGATTGTATCGCGGATGATCATCCTTTCGTCGAGAATGAGCA 659 Query 682 CAAGACTGCTCAACTCTTGCTTTCTTCTTCGACTTAGAGTTAG 724 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 660 CAAGACTGCTCCACTCTTGCTTTCTTCTTCGACTTTGAGTTAG 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29202154422 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5