BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08670.1
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334155 jgi|Araly1|334155|fgenesh1_pg.C_scaffold_1000720 1114 0.0
> Ahg334155 jgi|Araly1|334155|fgenesh1_pg.C_scaffold_1000720
Length=702
Score = 1114 bits (603), Expect = 0.0
Identities = 670/703 (95%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 23 ATGTCTAAGCTTATGCAGAATCCGGTGTTACATGAATTGAAGAAGCAAGCTTCTTTCTTC 82
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTCTAATCTTATGCAGAATCCGGTGTTACATGAACTGAAGAAGCAAGCTTCTTTCTTC 60
Query 83 ATCAAGGAAAAGATCAAGACTGCTCGTCTTGCTGTAACCGATGTTACTGCAGAAGAACTA 142
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 ATCAAGGAAAAGATCAAGACTGCTCGTCTCGCTGTAACCGATGTCACTGCAGAAGAACTA 120
Query 143 TTGACAGAAGAAGTTACGGGCAGCGATCACTCATCCATAGACTCACGCTCCATGGCGGCC 202
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 TTGACAGAAGAAGTTACGGGCAGCGATCACTCATCCATAGACTCACGTTCCATGGCGGTC 180
Query 203 ATAACAAGAGTTTCTTTTGAGGTTGATCAATTCCAAAGAATCGTGAAGATTCTACGTCAA 262
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 ATAACAAGAGCTTCTTTTGAGGTTGATCAATTCCAAAGAATCGTGAAGATTTTACGTCAA 240
Query 263 AGAATGGTAGTGTTTGATAGAAAGGAATGGCGCGGCATGTGCAACACGTTGTCAATGTTG 322
||||||||| |||||||||||| ||||||| | ||||||| |||||||||||||||||||
Sbjct 241 AGAATGGTAATGTTTGATAGAAGGGAATGGAGGGGCATGTACAACACGTTGTCAATGTTG 300
Query 323 AACCACTTGTTGCTCAATGGCCCACTAAGTGTATTCAGTGAGTTTCAACATGAGAGAGCT 382
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |
Sbjct 301 AACCACTTGTTGCTCAATGGCCCACTAAGTGTATTCAATGAATTTCAACATGAGA-AGGT 359
Query 383 A-TTATTGAAGATGCTATAAAGATGGAGTGGATTGATGAGAGAGGGTTCGATTGTGGTCT 441
| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 AATTATTGAAGATGCCATAAAGATCGAGTGGATTGATGAGAGAGGGTTCGATTGTGGTCT 419
Query 442 AAAGGTTCGAAACATAGCCGAGAAAGTACTAAGATTGCTTGAAGACGACATGTTTCTTAA 501
||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 420 AAAAGTTCGAAACATAGCCGAGAAAGTATTAAGATTGCTTGAAGATGACATGTTTCTTAA 479
Query 502 AGATGAGCGAGAAAGAAACCGTAAGCAAAGCATTGGTCGGATCACAGGATTTGGAAACTC 561
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 ATATGAGCGAGAAAGAAACCGTAAGCAAAGCATTGGTCGGATCACAGGATTCGGAAACTC 539
Query 562 GAGTTTTGTCATACATTCTGAAACGAACAACGGACGAGACGGCTCGTTAATGTTGAGTAA 621
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GAGTTTCACCATACATTCTGAAACGAACAACGGACGAGATGGCTCGTTAATGTTGAGTAA 599
Query 622 CCATCAAACTTGTGAAAATGATTGTATCGCGGATGATCATCCATTCGTCGAAAATGAGCA 681
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 600 CCATCAAACTTGTGAAAATGATTGTATCGCGGATGATCATCCTTTCGTCGAGAATGAGCA 659
Query 682 CAAGACTGCTCAACTCTTGCTTTCTTCTTCGACTTAGAGTTAG 724
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 660 CAAGACTGCTCCACTCTTGCTTTCTTCTTCGACTTTGAGTTAG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29202154422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5