BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08680.4
Length=2403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470937 jgi|Araly1|470937|fgenesh2_kg.1__891__AT1G08680.1 2603 0.0
> Ahg470937 jgi|Araly1|470937|fgenesh2_kg.1__891__AT1G08680.1
Length=2601
Score = 2603 bits (1409), Expect = 0.0
Identities = 1652/1766 (94%), Gaps = 30/1766 (2%)
Strand=Plus/Plus
Query 645 GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAA 704
|||| || ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 649 GACCGTGGAAGCTCTGAAGATATGACTCGACGGGCCAACTCCTATCATTCTTACTCCCAA 708
Query 705 AGCCCTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGCCCTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTT 768
Query 765 ACCGGCAAGTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ACCGGCAAGTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGC 828
Query 825 CCCGGACGTTTTAGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCA 884
|| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 829 CCTGGACGTTTTAGTGATCATATGTTTGAAGACCAATTCGCAAATGAGGGCTCAGCTCCA 888
Query 885 AGGGCTTCAGATTATTCTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCA 944
||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 889 AGGGCTTCAGATTTTTCTGTGTCAAGTGGAGGAGATCCGTTCAGGTCTGATATACAGTCA 948
Query 945 CCAAATTTTCAGCAGGAAGCTGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CCAAATTTTCAGCAGGAAGCTGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCT 1008
Query 1005 CCAAGTGAAAACTTATTTCCAGGCAGGCAACATCAGAGAACTACATCTTCTGGGAGTGTC 1064
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 CCAAGTGAGAACTTATTTCCAGGCAGGCAACCTCAGAGAACTACATCTTCTGGGAGTGTC 1068
Query 1065 AGATCAGTTGACAGTAATTTCATGTCTATCAAGTCATATACTTCGGGTGGTTTAGGGGAA 1124
||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1069 AGATCAGTTGACAGTAATTCCATCTCTATCAAGTCATATACCTCGAGTGGTTTAGGGGAA 1128
Query 1125 GCCGTATCTGAAAGTCGTCAAAATACAGGAAGCCAGCAAGGTAAAACATCTAATCATGTT 1184
||| | |||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1129 GCCATCTCTGAAAGTCGTCAAAATACAGGAAGCCAGCAAGATAAAGCATCTAATCATGTT 1188
Query 1185 CCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGATTTGTTTCAGTTGCCAGGAGCGCCA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 CCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGATTTGTTTCAGTTGCCAGGAGCGCCA 1248
Query 1245 GTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCACCCCGATCTCCACCTGTGAAT 1304
|| || ||||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||
Sbjct 1249 GTTGCCCAATCTGTCAATACATTTCAACCTTCAATAGCATCCCAACCTCCAACTGTGAAT 1308
Query 1305 CTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTCGTTTGCTGGAAATTTG 1364
|||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 1309 TTTCATCAAGCTCCACAGACATACTCATCCACCCCGACAAATTTGTTTGCTGGAAATTTG 1368
Query 1365 GGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAACGAAGGTTGGGCT 1424
|||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1369 GGTCAGCAACCCACTTCAAGACCACCAGACTTGTCTGCGCCTAAGAATGAAGGTTGGGCT 1428
Query 1425 TCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCCCTGGAGAT 1484
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 1429 TCTTTTGACAATCCCATGCCTGCTGTAAAATCTACAAACGTTATTACCTCCTCTGGAG-T 1487
Query 1485 TTCC-AGTTGGAACTGAAAATTGAAGAGA-TTCTACAGCCTAGCACAAGCATGCAATTGC 1542
| || |||||||| |||||| ||||| || ||| |||||||||||||| |||||||| ||
Sbjct 1488 TCCCCAGTTGGAAGTGAAAAATGAAG-GAATTCCACAGCCTAGCACAACCATGCAATGGC 1546
Query 1543 CACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAG 1602
|||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1547 CACCATATCCATCAATTGTGGACCAGCATGCTTTGTCGATATCAAGTCCATGGCAGGAAG 1606
Query 1603 ATCTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCG 1662
|||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 1607 ATCTCTCGGATGTTCTAAAAAATGTTGTCGATAATCCGCAGCTGTGGAATGCCTTTCCCG 1666
Query 1663 ACTCTATTGAGGCCAATCCTTTGGACAGCAGTAGGAATA-TTCACCAACAGGTAGATGGA 1721
||||||||||||| ||||||||||||||| ||||||||| || | |||||||||||||||
Sbjct 1667 ACTCTATTGAGGCAAATCCTTTGGACAGCGGTAGGAATACTT-ATCAACAGGTAGATGGA 1725
Query 1722 GCAAGTACTTCGTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGTCA 1781
|||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||
Sbjct 1726 GCAAGTACTTCGTCATATAACATTGATCAACAGCATCTGGAATCACAAGTTATAGAG--- 1782
Query 1782 CAGGAATTAAGCAATGATGGCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTT 1841
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1783 --G-AATTAAGCAATGATGGCACCCAAGCAACCAGAATCCCTGCTGGCTCTTCTGCTTTT 1839
Query 1842 GGTTTTCCAGGAAATATTGGCATGGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTA 1901
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1840 GGTTTTCCAGGAAACATTGGCATAGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTA 1899
Query 1902 AATGAACAAAAGTCAGCTAATCCATTTGATCTCCCCTATGATTCTGAGTTCGACTCAAAT 1961
||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 1900 AATGAGCAAAAGTCAGCTAATCCATTTGATCTACCCTATGATTCTGAGTTTGCCTCAAAT 1959
Query 1962 GACATGTTCTTGGACATGAGTTCGTTACAAGGGGCACTGCCCGATATCCAGACACCACAA 2021
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 GATATGTTCTTGGACATGAGTTCGTTACAAGGGGCACTGCCCGATATCCAGACACCACAA 2019
Query 2022 GCCTTCCTTAATGGTGTATCACAACCGTGGCTCGCTGCAGATTCTGTACCCTCGTACTTA 2081
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2020 GGCTTCCTTAATGGTGTATCACAACCGTGGCTCACTGCAGATTCTGTACCCTCGTACTTA 2079
Query 2082 CCTGCTCCAGCAGTCGCACAAGGTGGCTTAGCATACATGGCAGGGCAAGCATCAACG--- 2138
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2080 CCTGCTCCAGCAGTCTCACAAGGTGGCTTAGCATGCATGGCAGGGCAAGCATCAACGTCT 2139
Query 2139 -AA-T------T-CAGCAGCACAAGGCCCTGTTGCATTTACTGGAGGCAATCCATTTGCT 2189
|| | | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2140 CAACTACAGAATTCAGCAGCACAAGGCCCTGTTGCATCTACTGGAGGCAATCCATTTGCG 2199
Query 2190 TAGACACACCTCGGTCTTCTTCATCTTCTTCTTCACTTATGCCTAGATGCTTCATCTTT- 2248
||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2200 TAGACACACCTTGATCTGCTTCATCATCTTCTTCACTTATGCCTAGATGCTTCATCTTTT 2259
Query 2249 GGATTCATCTTCATTTAGTGCCTTCCATAt-ttttttaaaaaaaaGAAGAAACCAGCCTT 2307
||||||||| ||||| |||||||||||||| |||||| |||| |||||||||||||||
Sbjct 2260 GGATTCATCCTCATTCAGTGCCTTCCATATATTTTTTTAAAA---GAAGAAACCAGCCTT 2316
Query 2308 ATTGTGCAATGTGTTTATTTCTTTGTTCGGAACCGACTTGAGCTGTATGTACCTTT-GAT 2366
||||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| |||
Sbjct 2317 ATTGTTCAATGTGTTTATTTCTTTATTCGGAACCAACTTCAGCTGTATGTACCTTTTGAT 2376
Query 2367 TTGAGTGTATTTGCAAGTGGACATGA 2392
||||||||||||||||||||||||||
Sbjct 2377 TTGAGTGTATTTGCAAGTGGACATGA 2402
Score = 815 bits (441), Expect = 0.0
Identities = 568/623 (91%), Gaps = 34/623 (5%)
Strand=Plus/Plus
Query 23 AAAGGATAAAAAAGCTTTCTT-TT-TCTCTCTCTCT-ATCATCTCTGTCAAATTCAAAAT 79
||||||||||||||||||||| || ||||||||| | ||||||||||| |||||||||||
Sbjct 1 AAAGGATAAAAAAGCTTTCTTCTTCTCTCTCTCTATCATCATCTCTGTGAAATTCAAAAT 60
Query 80 TCGAG-TATTCGAAAAATCCAGCTCCAAAATCGTTGATTAGCAGCGACTAAAACCCAAAG 138
||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 61 TCGAGCT-TTCGAAAAATCCAGCTCCAAAATCGTTGATTATCAGCGACTTAAACCC-AAC 118
Query 139 TTT-CCTCCAATTTTAACGAATTACTTCGTGGGTCAATCTCATAATCTGGGAACACTCTT 197
||| ||| ||| ||| ||| | | || | | | || |||| || ||
Sbjct 119 TTTGCCTTCAA-TTTCACG-A--A--TC----G-C--T-TC-----GTGGG-TCAATC-- 156
Query 198 TCGGTTTTGATTTTGTTGGCAGCATCTATTCT-AAGCGAAATGATGGGAAGTAAAAGAGA 256
|| | | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 157 TC----ATAACTTTGTTGGCAGCATCTATTCTAAAGCGAAATGATGGGAAGTAAAAGAGA 212
Query 257 AGAAGAGAGGAACGAGAAGATTATTCGTGGGCTTATGAAGCTTCCACCGAATCGTCGTTG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 AGAAGAGAGGAACGAGAAGATTATTCGTGGGCTTATGAAGCTTCCACCGAATCGTCGTTG 272
Query 317 TATCAACTGCAATAGCCTTGGCCCTCAATATGTTTGCACAACTTTCTGGACCTTCGTATG 376
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 273 TATCAACTGCAATAGCCTTGGCCCTCAATATGTTTGCACAACTTTCTGGACTTTCGTATG 332
Query 377 CATGGCTTGTAGCGGGATACACCGCGAATTCACTCATCGTGTGAAATCTGTGTCAATGTC 436
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 333 CATGGCTTGTAGCGGGATACACCGTGAATTTACTCATCGTGTGAAGTCTGTGTCAATGTC 392
Query 437 AAAGTTTACTTCTAAAGAAGTTGAAGTACTTCAAAATGGTGGTAATCAGCGCGCCCGAGA 496
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 393 AAAGTTTACTTCTAAAGAAGTTGAAGTACTTCAAAATGGTGGTAATCAGCGTGCCCGAGA 452
Query 497 AATATATTTGAAAAACTGGGACCACCAACGACAGAGGCTTCCAGAAAACAGTAATGCTGA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AATATATTTGAAAAACTGGGACCACCAACGACAGAGGCTTCCAGAAAACAGTAATGCTGA 512
Query 557 GAGAGTTCGCGAATTTATCAAAAATGTGTATGTGCAAAAGAAATATGCAGGCGCAAATGA 616
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 513 GAGAGTTCGCGAATTTATCAAAAGTGTGTATGTGCAAAAGAAATATGCAGGTGCAAATGA 572
Query 617 TGCGGACAAGCCTTCGAAAGATA 639
||||||||||||| |||||||||
Sbjct 573 TGCGGACAAGCCTCCGAAAGATA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90540512365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5