BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08700.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470941 jgi|Araly1|470941|fgenesh2_kg.1__895__AT1G08700.1 2309 0.0
> Ahg470941 jgi|Araly1|470941|fgenesh2_kg.1__895__AT1G08700.1
Length=1510
Score = 2309 bits (1250), Expect = 0.0
Identities = 1429/1516 (94%), Gaps = 10/1516 (1%)
Strand=Plus/Plus
Query 50 AGTACCTCTCTCCTCTCGTCTTCTTCCTCTAGAACTCCC--AAAAATGGCGTAAGCCAAA 107
|||| ||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||
Sbjct 1 AGTAACTCTCTCCTCTCGTCTTCTTCCTCTGGAACCCCCAAAAAAATGGCGT-AGCCAAA 59
Query 108 AAATCCACCGAAATCGATAACGATGGAGTCTAGTATCCTCGATTCCCTCGGAGTTGAGAT 167
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 AAATCCTCCGAAATCGATAACGATGGAGTCTAGTATCCTCGATTCTCTCGGAGTTGAGAT 119
Query 168 TATCGGCGTGATGGCTCCCGTCTCCATCTGCATGTTCCTCGTCGTCCTTCTCACCTACTC 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TATCGGCGTGATGGCTCCCGTCTCCATCTGCATGTTCCTCGTCGTCCTTCTCACCTACTC 179
Query 228 TCTCTCTGTCACTTCTGACCCTCAGATCCGTAGCGCCGCTAACCTCATTTACATCGAGAA 287
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 TCTCTCTGTCACTTCCGACCCTCAGATCCGTACCGCCGCTAACCTCATTTACATCGAGAA 239
Query 288 TCCCTCCGACTCCACCACCGTCAAGCTCGAAGGTAGTCTCGCCAACGCCATCGTCTTCGT 347
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TCCCTCCGACTCCGCCACCGTCAAGCTCGAAGGTAGTCTCGCCAACGCCATCGTCTTTGT 299
Query 348 CGTCCTCATTGCCGCCGTCACTTTCATCCTTGTTCTCCTCTTCTACTATAACTTCACCAA 407
||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 300 CGTCCTCGTTGCCGCCGTCACTTTCATCCTTGTTCTCCTCTTCTACTACAATTTCACCAA 359
Query 408 TTTCCTTAAGCATTACATGCGTTTCTCTGCCTTCTTTGTCTTAGGTACGATGGGAGGTGC 467
|||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 360 TTTCCTCAAGCATTACATGCGCTTCTCCGCCTTCTTTATCTTAGGTACGATGGGAGGTGC 419
Query 468 AATTTTCCTATCGATAATCCAGCATTTCTCAATTCCTGTTGATTCCATCACCTGCTTCAT 527
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 AATTTTCCTGTCGATTATCCAGCATTTCTCGATTCCTGTTGATTCCATCACCTGCTTCAT 479
Query 528 ATTGCTTTTCAATTTCACGATCTTGGGGACTTTGTCTGTGTTTGCTGGTGGGATACCAAT 587
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 480 ATTGCTTTTCAATTTCACCATCTTGGGGACTTTGTCAGTGTTTGCTGGTGGAATACCAAT 539
Query 588 TGTGCTTAGACAGTGTTATATGGTTGTTATGGGGATAGTTGTTGCAGCTTGGTTCACTAA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTGCTTAGACAGTGTTATATGGTTGTTATGGGGATAGTTGTTGCAGCTTGGTTCACTAA 599
Query 648 GTTACCTGAGTGGACTACATGGTTTATCTTGGTGGCTTTAGCTTTGTATGACTTGGTTGC 707
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTACCTGAATGGACTACATGGTTTATCTTGGTGGCTTTAGCTTTGTATGACTTGGTTGC 659
Query 708 TGTTTTGGCACCTGGTGGGCCACTTAAGTTGTTGGTAGAGCTGGCTTCGAGCCGCGATGA 767
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 660 TGTTTTGGCACCTGGTGGGCCACTTAAGCTGTTGGTGGAGCTGGCTTCTAGCCGCGATGA 719
Query 768 GGAACTTCCTGCTATGGTTTATGAAGCTAGGCCGACTGTTTCATCAGGCAACCAAAGGAG 827
|||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 720 AGAACTTCCTGCTATGGTTTATGAAGCTAGGCCGACTGTCTCCTCAGGCAACCAAGGGAG 779
Query 828 AAACCGTGGCTCGAGTTTAAGGGCTTTGGTTGGTGGTgggggggTTTCAGATTCTGGATC 887
||||||||| |||||||| |||||||||||||| | ||| ||||||||||||||||||||
Sbjct 780 AAACCGTGGTTCGAGTTTGAGGGCTTTGGTTGGCGCTGGTGGGGTTTCAGATTCTGGATC 839
Query 888 AGTTGAGCTGCAAGCAGTTCGGAATCATGATGTAAACCAACTTGGAAGGGAAAATTCTCA 947
||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 AGTAGAGCTCCAAGCAGTTCGGAATCATGATGGAAACCAACTTGGAAGGGAAAATTCTCA 899
Query 948 TAATATGGATTATAATGCTATTGCGGTGAGGGATATAGACAATGTAGATGATGGTATTGG 1007
|||| |||||||||||||| |||| |||| |||||||||||||||||||| | || |||
Sbjct 900 TAATCTGGATTATAATGCTGTTGCAGTGACGGATATAGACAATGTAGATG--G-TAATGG 956
Query 1008 TAACGGAAGCAGAGGTGGACTTGAGAGGTCACCTCTAGTTGGAAGTCCCAGTGCGTCAGA 1067
|||||||| ||||||||| ||||||||||||||||| |||||||||||| |||| |||||
Sbjct 957 TAACGGAAACAGAGGTGGTCTTGAGAGGTCACCTCTGGTTGGAAGTCCCGGTGCCTCAGA 1016
Query 1068 GCACTCAACCTC-AGTAGGAACCAGAGGAAATATGGAAGACAGAGAAAGTGTTATGGATG 1126
|||||||||| | ||| ||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 1017 GCACTCAACC-CGAGTTGGAACCAGAGGAAATATCGATGACAGAGAAAGTGTTATAGATG 1075
Query 1127 AAGAAATGTCTCCACTAGTTGAGTTGATGGGTTGGGGAGATAATAGGGAAGAAGCAAGAG 1186
||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1076 AAGAAATGTCTCCTCTTGTTGAGTTGATGGGCTGGGGAGATAATAGGGAAGAACCAAGAG 1135
Query 1187 GTTTGGAGGAGTCGGATAACGTTGTGGACA-TTTCAAATAGAGGCATAAAACTTGGTCTT 1245
|||||| ||||| |||||||||||| |||| ||| || |||||||||||||||||||||
Sbjct 1136 GTTTGGTGGAGTTGGATAACGTTGTCGACAGTTTGAA-TAGAGGCATAAAACTTGGTCTA 1194
Query 1246 GGAGACTTTATTTTCTACAGTGTTCTTGTTGGTAGGGCAGCAATGTATGATCTGATGACT 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGAGACTTTATTTTCTACAGTGTTCTTGTTGGTAGGGCAGCAATGTATGATCTGATGACG 1254
Query 1306 GTGTATGCCTGTTACCTTGCGATCATCTCCGGACTTGGGTGCACTCTTATTTTGTTATCT 1365
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1255 GTTTATGCCTGTTATCTTGCGATCATCTCGGGACTTGGGTGCACTCTTATTTTGTTGTCC 1314
Query 1366 GTGTACAACCGAGCTCTGCCTGCCCTTCCCATATCCATCATGTTGGGTGTTGTTTTTTAC 1425
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1315 GTATACAACCGAGCTCTGCCTGCCCTTCCCATATCTATCATGTTGGGTGTTGTTTTCTAC 1374
Query 1426 TTCTTGACGCGACTATTGATGGAGCCCTTTGTTGTTGGGGTGACAACAAACTTGATGATG 1485
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1375 TTCTTGACGCGATTATTGATGGAGCCGTTTGTTGTTGGGGTGACAACAAACTTGATGATG 1434
Query 1486 TTCTGATTAACCCAAAATTCTAGTGGACCAAGTAAATGAAATCCTGATTATGCTGCTTTA 1545
|||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 1435 TTCTGATTAACCAAAAATTCTAGTGGAACAAGTAAATGATATCATGATTATGCTGCTTTA 1494
Query 1546 TCCATGTATTTCACCT 1561
|||||||||| |||||
Sbjct 1495 TCCATGTATTGCACCT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5