BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08710.2 Length=1011 Score E Sequences producing significant alignments: (Bits) Value Ahg311923 jgi|Araly1|311923|fgenesh1_pm.C_scaffold_1000703 1267 0.0 Ahg347008 jgi|Araly1|347008|fgenesh1_pg.C_scaffold_5000400 296 2e-79 > Ahg311923 jgi|Araly1|311923|fgenesh1_pm.C_scaffold_1000703 Length=885 Score = 1267 bits (686), Expect = 0.0 Identities = 827/895 (92%), Gaps = 10/895 (1%) Strand=Plus/Plus Query 88 ATGTCTGCAAACGAGATACCCGACGAGCTATGGAGAAAGATCCTAGAGATTGGCGTAAAG 147 ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1 ATGTCCGCAAACGAGATACCCGACGAGCTATGGAGAAAGATCATGGAGATTGGCGTAAAG 60 Query 148 TCTTCGACTTTCTCGTACAAAGATCTTTGCTGCATCTCTATCTCCTCTCGCCGTCTCTTC 207 || || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 TCCTCCACTTTCTCCTACAAAGATCTCTGCTGCATCTCTATCTCCTCTCGCCGTCTCTTC 120 Query 208 CGATTGTCCTGCGATGATTCCCTCTGGGATCTTCTGCTCGTCCATGATTTCCCTAACCAC 267 ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||| Sbjct 121 CGATTGTCCTGCGATGATTCCCTCTGGGACCTTCTGCTCTTCCTTGATTTCCCTACCCAT 180 Query 268 ATCGTCTCTGCTTCTTCTTCTTCTGAATCTCCCACCAAGTTTATCTACATGACTAGGTTT 327 |||||||||||||| |||||| | ||||| || ||||||||||||||| |||||||||| Sbjct 181 ATCGTCTCTGCTTCCTCTTCT-C--AATCTTCCTCCAAGTTTATCTACAGGACTAGGTTT 237 Query 328 GAGAGGGAGAAGGAGAGGAAATTAGCTGCCCATAGAAGAGCTTTACTCAGGAAGGAGAGT 387 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 238 GAGAGGGAGAAGGAGAGGAAAGTAGCTGCCCATAGAAGAGCTTTACTCAGAAAGGAGAGT 297 Query 388 GAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCACGATTGTCCGACGAGGCT 447 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 298 GAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCTCGATTGTCGGACGAGGCT 357 Query 448 GAGAGACTACAGTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAGCATCA 507 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GAGAGATTACATTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAGCATCA 417 Query 508 GTAGCTTTGAACGTTTGGCAGCCGGAGGTAGTACGTGGTAGACAAAAGCAAATGGTTGAG 567 ||||||||||||||||||||||| || | |||||||| |||||||||||| | |||||| Sbjct 418 GTAGCTTTGAACGTTTGGCAGCCACAGATTGTACGTGGCAGACAAAAGCAATTAGTTGAG 477 Query 568 CAAAACGCTGTTCCTGTTGAGGGTCGATTGCGTGCACTTGAGATGGAGATGAAGTTATGC 627 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 478 CAAAACGCTGTTCCTGTTGAGGGTCGATTGCGTGCACTTGAGATGGAGATTAAGTTATGC 537 Query 628 AAGCAGCAAATCATGGGTTTGAATAGGGCACTTAGGGAGGTAAAACACCGATATGACATA 687 || ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||| Sbjct 538 AAACAGCAAATCATGGGTGTGAATAGAGCACTTAGGGAGGTAAAACACCGATTTGATATA 597 Query 688 GCAATAAAAGAGCTAGAATCCATGAAGTATCATCCTTTACGAGATTACAAGTCGATACGT 747 | ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 598 TCCCTAAAAGAGCTAGAATCCATGAAGTATCATCCTTTACGAGATTACAAGTCGA---GT 654 Query 748 AATGGAGACCAAGGAAGTAATGGCAAGACGAAAAAGTTGAAAACTAGCATCAACTATAGT 807 ||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||| Sbjct 655 ---GGAGACCAAGGAAGTAATGGCAAGATGAAGAAGTTGAAAACGAGCATTAACTATAGT 711 Query 808 GGAGACCAAGTAAGTAATGGCAAGAGGAGGAAGTTGAAAACAAGCATTGATTGTAAGTTT 867 |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| Sbjct 712 GGAGACCAAGTAAGTAATGGCAAGAGGAAGAAGTTGAAAACAAGCATTAACTGTAAGTTT 771 Query 868 ATGAACATTTCTCACTTTTCTTCATGTAGTAGTGTTACCGAAAAATTCTATTCTTACTCT 927 ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||| | Sbjct 772 ATGAACAATTCTCACTTTTCTTCATGTAGTAGTGTTGCCGAGAAATACTATTCTTACTGT 831 Query 928 CCAAAAATTATACATGAGTATATTCCTGAAAATCTGCTTGTTCTTTGAAGTGTGA 982 | |||||| | ||||||||| || |||||||||||||| |||| | |||||||| Sbjct 832 CTAAAAATC-TCCATGAGTATTTTTCTGAAAATCTGCTTATTCTCTCAAGTGTGA 885 > Ahg347008 jgi|Araly1|347008|fgenesh1_pg.C_scaffold_5000400 Length=897 Score = 296 bits (160), Expect = 2e-79 Identities = 185/197 (94%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 323 GGTTTGAGAGGGAGAAGGAGAGGAAATTAGCTGCCCATAGAAGAGCTTTACTCAGGAAGG 382 |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 17 GGTTTGAGAGGGAGAAGGAGAGGAAAGTAGCTGCATATAGAAGAGCTTTACTCAGGAAGG 76 Query 383 AGAGTGAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCACGATTGTCCGACG 442 |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 77 AGAGTGAAATTTATGAATGGGGCCGGAGGATTCGTGAATTGGAGGCTCGATTGTCGGACG 136 Query 443 AGGCTGAGAGACTACAGTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAG 502 ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 137 AGGCTGAGAGATTACATTCTTCTTCTCTGCAATTTTCAGATTTGCTCAAAGTGAGGCAAG 196 Query 503 CATC-AGTAGCTTTGAA 518 |||| | | |||||||| Sbjct 197 CATCGA-TGGCTTTGAA 212 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37589196162 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5