BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08710.2
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311923 jgi|Araly1|311923|fgenesh1_pm.C_scaffold_1000703 1267 0.0
Ahg347008 jgi|Araly1|347008|fgenesh1_pg.C_scaffold_5000400 296 2e-79
> Ahg311923 jgi|Araly1|311923|fgenesh1_pm.C_scaffold_1000703
Length=885
Score = 1267 bits (686), Expect = 0.0
Identities = 827/895 (92%), Gaps = 10/895 (1%)
Strand=Plus/Plus
Query 88 ATGTCTGCAAACGAGATACCCGACGAGCTATGGAGAAAGATCCTAGAGATTGGCGTAAAG 147
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 ATGTCCGCAAACGAGATACCCGACGAGCTATGGAGAAAGATCATGGAGATTGGCGTAAAG 60
Query 148 TCTTCGACTTTCTCGTACAAAGATCTTTGCTGCATCTCTATCTCCTCTCGCCGTCTCTTC 207
|| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCCTCCACTTTCTCCTACAAAGATCTCTGCTGCATCTCTATCTCCTCTCGCCGTCTCTTC 120
Query 208 CGATTGTCCTGCGATGATTCCCTCTGGGATCTTCTGCTCGTCCATGATTTCCCTAACCAC 267
||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||
Sbjct 121 CGATTGTCCTGCGATGATTCCCTCTGGGACCTTCTGCTCTTCCTTGATTTCCCTACCCAT 180
Query 268 ATCGTCTCTGCTTCTTCTTCTTCTGAATCTCCCACCAAGTTTATCTACATGACTAGGTTT 327
|||||||||||||| |||||| | ||||| || ||||||||||||||| ||||||||||
Sbjct 181 ATCGTCTCTGCTTCCTCTTCT-C--AATCTTCCTCCAAGTTTATCTACAGGACTAGGTTT 237
Query 328 GAGAGGGAGAAGGAGAGGAAATTAGCTGCCCATAGAAGAGCTTTACTCAGGAAGGAGAGT 387
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 238 GAGAGGGAGAAGGAGAGGAAAGTAGCTGCCCATAGAAGAGCTTTACTCAGAAAGGAGAGT 297
Query 388 GAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCACGATTGTCCGACGAGGCT 447
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 298 GAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCTCGATTGTCGGACGAGGCT 357
Query 448 GAGAGACTACAGTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAGCATCA 507
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAGAGATTACATTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAGCATCA 417
Query 508 GTAGCTTTGAACGTTTGGCAGCCGGAGGTAGTACGTGGTAGACAAAAGCAAATGGTTGAG 567
||||||||||||||||||||||| || | |||||||| |||||||||||| | ||||||
Sbjct 418 GTAGCTTTGAACGTTTGGCAGCCACAGATTGTACGTGGCAGACAAAAGCAATTAGTTGAG 477
Query 568 CAAAACGCTGTTCCTGTTGAGGGTCGATTGCGTGCACTTGAGATGGAGATGAAGTTATGC 627
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 CAAAACGCTGTTCCTGTTGAGGGTCGATTGCGTGCACTTGAGATGGAGATTAAGTTATGC 537
Query 628 AAGCAGCAAATCATGGGTTTGAATAGGGCACTTAGGGAGGTAAAACACCGATATGACATA 687
|| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 538 AAACAGCAAATCATGGGTGTGAATAGAGCACTTAGGGAGGTAAAACACCGATTTGATATA 597
Query 688 GCAATAAAAGAGCTAGAATCCATGAAGTATCATCCTTTACGAGATTACAAGTCGATACGT 747
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 TCCCTAAAAGAGCTAGAATCCATGAAGTATCATCCTTTACGAGATTACAAGTCGA---GT 654
Query 748 AATGGAGACCAAGGAAGTAATGGCAAGACGAAAAAGTTGAAAACTAGCATCAACTATAGT 807
||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||
Sbjct 655 ---GGAGACCAAGGAAGTAATGGCAAGATGAAGAAGTTGAAAACGAGCATTAACTATAGT 711
Query 808 GGAGACCAAGTAAGTAATGGCAAGAGGAGGAAGTTGAAAACAAGCATTGATTGTAAGTTT 867
|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 712 GGAGACCAAGTAAGTAATGGCAAGAGGAAGAAGTTGAAAACAAGCATTAACTGTAAGTTT 771
Query 868 ATGAACATTTCTCACTTTTCTTCATGTAGTAGTGTTACCGAAAAATTCTATTCTTACTCT 927
||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||| |
Sbjct 772 ATGAACAATTCTCACTTTTCTTCATGTAGTAGTGTTGCCGAGAAATACTATTCTTACTGT 831
Query 928 CCAAAAATTATACATGAGTATATTCCTGAAAATCTGCTTGTTCTTTGAAGTGTGA 982
| |||||| | ||||||||| || |||||||||||||| |||| | ||||||||
Sbjct 832 CTAAAAATC-TCCATGAGTATTTTTCTGAAAATCTGCTTATTCTCTCAAGTGTGA 885
> Ahg347008 jgi|Araly1|347008|fgenesh1_pg.C_scaffold_5000400
Length=897
Score = 296 bits (160), Expect = 2e-79
Identities = 185/197 (94%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 323 GGTTTGAGAGGGAGAAGGAGAGGAAATTAGCTGCCCATAGAAGAGCTTTACTCAGGAAGG 382
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 17 GGTTTGAGAGGGAGAAGGAGAGGAAAGTAGCTGCATATAGAAGAGCTTTACTCAGGAAGG 76
Query 383 AGAGTGAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCACGATTGTCCGACG 442
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 77 AGAGTGAAATTTATGAATGGGGCCGGAGGATTCGTGAATTGGAGGCTCGATTGTCGGACG 136
Query 443 AGGCTGAGAGACTACAGTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAG 502
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 137 AGGCTGAGAGATTACATTCTTCTTCTCTGCAATTTTCAGATTTGCTCAAAGTGAGGCAAG 196
Query 503 CATC-AGTAGCTTTGAA 518
|||| | | ||||||||
Sbjct 197 CATCGA-TGGCTTTGAA 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5