BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08750.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919623 jgi|Araly1|919623|scaffold_100904.1 1757 0.0
> Ahg919623 jgi|Araly1|919623|scaffold_100904.1
Length=1192
Score = 1757 bits (951), Expect = 0.0
Identities = 1114/1189 (94%), Gaps = 26/1189 (2%)
Strand=Plus/Plus
Query 199 CAGATTATCTTCCTAAAAATGAAGA---TTCTTACACTCGTAATGCTTTTATGCTACTCG 255
||||| ||||||||||||||||||| |||||| ||||| ||||||| | ||||||||
Sbjct 4 CAGATAATCTTCCTAAAAATGAAGATTCTTCTTATACTCGGAATGCTTCTCTGCTACTCC 63
Query 256 TTCGTCTCTTCTACCGGAGATACGACTATCCACACAAACAATTGGGCTGTTTTGGTCTGC 315
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 64 TTCGTCTCTTCTTCCGGAGATACGACTATTCACACGAACAATTGGGCTGTTTTGGTCTGC 123
Query 316 ACTTCTCGCTTCTGGTTTAACTACCGGCACATGGCCAATACTCTGTCCCTCTATAGGACA 375
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 124 ACTTCTCGCTTCTGGTTTAACTACCGGCACATGGCCAACACTCTGTCCCTGTATAGGACA 183
Query 376 GTCAAGAGACTTGGAATACCAGATGAGAGGATCATTCTTATGCTGGCTGATGATATGGCC 435
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 184 GTCAAGAGACTTGGAATACCAGATGAGAGGATTATTCTAATGCTGGCTGATGATATGGCC 243
Query 436 TGTAATGCTAGAAATGAATATCCTGCTCAAGTTTTCAACAATGAAAACCACAAACTTAAC 495
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 TGTAATGCTAGAAATGAATATCCTGCTCAAGTTTTTAACAATGAAAACCACAAACTTAAC 303
Query 496 CTCTATGGAGATAACGTTGAGGTAGATTATCGTGGATATGAGGTAACAGTTGAAAATTTC 555
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTGTACGGAGATAACGTTGAGGTAGATTATCGTGGATATGAGGTAACAGTTGAAAATTTC 363
Query 556 TTACGGGTTTTGACTGGGCGTCATGAGAATGCTGTTCCAAGGTCAAAGCGTCTCCTCAGT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTACGGGTTTTGACTGGGCGTCATGAGAATGCTGTTCCAAGGTCAAAGCGTCTCCTCAGT 423
Query 616 GATGAGGGTAGCCATATACTACTGTACATGACTGGGCATGGAGGTGATGAATTTTTGAAG 675
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 424 GATGAGGGTAGCCATATTCTACTGTACATGACTGGGCATGGAGGTGATGAATTTCTAAAG 483
Query 676 TTTCAAGATGCAGAAGAACTCCAGAGTCACGATTTAGCAGATGCTGTAAAACAAATGAAA 735
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 484 TTTCAAGATGCAGAAGAACTCCAGAGCCACGATTTGGCAGATGCTGTAAAACAAATGAAA 543
Query 736 GAGAAGCGTAGATTCAAGGAGCTGATGATAATGGTTGATACTTGCCAAGCTGCCACTCTC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GAGAAGCGTAGATTCAAGGAGCTGATGATAATGGTTGATACTTGCCAAGCTGCCACTCTC 603
Query 796 TTTAATCAGCTTCAATCTCCTGGTGTTTTGGCTATTGGTAGCAGTCTAAAAGGAGAGAAC 855
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 604 TTTAATCAGCTTCAATCTCCTGGTGTTTTGGCTATTGGTAGCAGTCTAAAAGGCGAGAAC 663
Query 856 TCATATTCCCATCACCTGGATTCAGATATTGGTGTATCTGTTGTAGATCGGTTTACATAT 915
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 664 TCATATTCCCATCACCTTGATTCAGATATTGGTGTTTCTGTTGTAGATCGGTTTACATAT 723
Query 916 TACACTCTTGCATTCTTTGAGAGGCTCAATATATATGACAATGCATCACTTAACAGTTTA 975
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 724 TACACTCTTGCATTTTTTGAGAGGCTCAATATCTATGACAATGCTTCACTTAACAGTTTA 783
Query 976 TTTAGGTCCTACGATCCGAGACTGCTAATGTCTACTGCCTACTACCGGACTGATCTTTAC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TTTAGGTCCTACGATCCGAGACTGCTAATGTCTACTGCCTACTACCGGACTGATCTTTAC 843
Query 1036 CAACCACATCTGGTGGAGGTACCGGTCACAAATTTCTTCGGTTCAGTTATGGAGACCATT 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CAACCACATCTGGTGGAGGTACCGGTCACAAATTTCTTCGGTTCAGTTATGGAGACCATT 903
Query 1096 CATACTGATTCAGCTTACAAAGCTTTCTCAAGTAAAATCTCCGAA-AGAAAGATCAATTC 1154
||||||||||||||||||||||| |||||||||||||||||| || || |||| |||| |
Sbjct 904 CATACTGATTCAGCTTACAAAGCCTTCTCAAGTAAAATCTCC-AATAGTAAGAGCAATCC 962
Query 1155 TGAGATGCCATTCAATCAACTTTCCGAACACGATCTTAAAGAAGAGCTTGAGAATACAAA 1214
||||||||| |||||||| ||||||| |||||| | | | || ||
Sbjct 963 CGAGATGCCACTCAATCAAGTTTCCGAGCACGAT------G-----C---A-AA--CAT- 1004
Query 1215 CATACCAAACGATGAGTTGATAGCTGAGAAGCAAAAATGCCCATATTCACAAATGCGGGC 1274
| ||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1005 C---CCAAATGATGAGTTGAAAACTGAGAAGCAAAAATGCCCATATTCACAAATGCGGGC 1061
Query 1275 AGACCTCCACGAGAAAGTGGAGAAGCTTGAAAATGTCGATACAGTGGTTAACCTCAGCAT 1334
|||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1062 AGACCTCCACAAGAAACTGGAGAAGCTTGAAAATGTTGATACAGTGGTTAACCTCAGCAT 1121
Query 1335 AGCAGTGATGGTACTCGCTGTAATGGTCTCATCATCTTTACTACGATGA 1383
||| |||||||| ||| ||||||||| ||||||||||| | |||||||
Sbjct 1122 AGCTGTGATGGTTGTCGTTGTAATGGTGTCATCATCTTTGCAACGATGA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5