BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08760.1
Length=2566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470949 jgi|Araly1|470949|fgenesh2_kg.1__903__AT1G08760.1 3709 0.0
> Ahg470949 jgi|Araly1|470949|fgenesh2_kg.1__903__AT1G08760.1
Length=2538
Score = 3709 bits (2008), Expect = 0.0
Identities = 2386/2562 (93%), Gaps = 51/2562 (2%)
Strand=Plus/Plus
Query 3 TTTTCGCAATTTTCTCTTTTTGATTCTCTTCCTTCCTTGGAATCCACCACACTCCATTTG 62
|||| ||||||||||||||||||||||| | || |||||||||||| ||| || |||||
Sbjct 1 TTTT-GCAATTTTCTCTTTTTGATTCTCCT-CTCCCTTGGAATCCA-CACTTTCAATTTG 57
Query 63 CTTCTTCTGAGATCTGATCTCTCTCCTAGGTGATGCGCTGCGGAGATGGCGAATCTTGTC 122
| |||||||||||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 58 GTGCTTCTGAGATCTGATCTC-CT-C--GGTGATGCGCTACGGAGATGGCGAATCTTGTC 113
Query 123 CCCGGCGTTTTACTCAAGCTTCTCCAGCACATGAACACCGACGTCAAAATCGCCGGCGAA 182
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 CCCGGTGTTTTGCTCAAGCTTCTCCAGCACATGAACACCGACGTCAAAATCGCCGGCGAA 173
Query 183 CACAGGTCCTCTCTTTTACAAGTCATCAGTATTGTTCCCGCTTTAGCCGGAGGTGAGCTA 242
||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 174 CACAGGTCCTCTCTTCTACAAGTCGTCAGTATTGTTCCCGCTTTGGCCGGAGGTGAGCTT 233
Query 243 TTCCCGAATCAAGGCTTTTATCTCAAAGTCTCTGATTCCTCTCACGCCACTTATGTCTCT 302
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 234 TTCCCGAATCAAGGCTTTTATCTCAGAGTCTCTGATTCTTCTCACGCCACTTATGTCTCT 293
Query 303 TTACCTGATGAACACGATGATTTGATTCTTAGCGACAAGATCCAATTAGGTCAGTATATT 362
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 294 TTACCTGATGAGCACGATGATTTGATTCTTAGCGATAAGATCCAATTAGGTCAGTTTATT 353
Query 363 CATGTTGATAGAGTCGAATCTTCTTCCCCTGTTCCTATTCTTCGTGGTGTTAGACCTGTT 422
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 354 CATGTCGATAGAGTCGAATCTTCTTCTCCTGTTCCTATTCTTCGTGGTGTTAGGCCTGTT 413
Query 423 CCTGGTAGACATCCTTGTGTTGGTGA-TCCTGAAGATATTGTAGCTACTCATTCACTAGG 481
|||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||
Sbjct 414 CCTGGTAGACATCCTTGTGTTGGT-ACTCCTGAAGATATTGTAGCTACTCACTCGCTAGG 472
Query 482 GTTTCTCAGTGATG---ACAAGGTTAAAAATGATAATAATGGTGGTGTTAGTTCGAAACC 538
||||||| |||||| |||||||| |||||||||||||||| || || |||||||||
Sbjct 473 GTTTCTCTGTGATGACAACAAGGTT---AATGATAATAATGGTGTTGCTAATTCGAAACC 529
Query 539 TAAAGAGAGAGTTAAGGCGTCTG---TT--A--A--A-----G-CTAATGGGAGTGGAAG 583
||||||||||||||||| |||| || | | | | ||||||||||||||||
Sbjct 530 GAAAGAGAGAGTTAAGGCATCTGTTATTAAAGGAGGAGTGGTGTCTAATGGGAGTGGAAG 589
Query 584 TGATGGTGAGAGAATTA-TAGGTAATAGACTGAGTGTTAGTATCTCTAGGGATGATTCTT 642
||| |||||||||| || ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 590 TGAGGGTGAGAGAA-TACTAGGTAATAGACTGAGTGTTAGTATCTCTAGGGATCAATCTT 648
Query 643 CTGATGGTAAAAAGCCGGTGTCTGCTCTATTTCGAGCTAAATCTGCGAAGTCGAGTTTGA 702
| || ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||
Sbjct 649 CCGAGGGTAAAAAGCCCGTGTCTGCTCTATTTCGAGCCAAATCTGCCAAATCGAGTTTGA 708
Query 703 GTTTGGATGTAAAGAAGGAATCTTTGGGGAAGCTCAAGACTTCTTCGGGTTCTAAGTCTA 762
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 709 CTTTGGATGTAAAGAAGGAATCTTTGGGGAAGCTTAAGACTTCTTCGGGTTCTAAGTCTA 768
Query 763 TTCCTTCTTCCCCTACGAGTTGTTACTCACTGCCTAATTCTTTTGCAAAGTTTGCTAATG 822
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 769 TTCCTTCTTCGCCTACGAGTTGTTACTCACTGCCTAACTCTTTTGCAAAGTTTGCAAATG 828
Query 823 GGATTAAGCAGCAACAGACTGTGAAGCCAAAGTTATTGGAGAAGGGTTCTCCTAGAATGG 882
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GGATTAAGCAGCAGCAGAATGTGAAGCCAAAGTTATTGGAGAAGGGTTCTCCTAGAATGG 888
Query 883 GGTTGTCAGAGAAGGGCCGGTCTCTTCTTAAAGCGGAGAGTCCGAAAGTTGGGAAAAAGC 942
|||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 889 GGTTGTCAGATAAGGGGCGGTCTCTTCTCAAGGCGGAGAGTCCGAAAGTTGGGAAAAAGC 948
Query 943 TTCCCATGATTAAGAATTTTGTGCAGGGGATTGAGTTTGGAGCTAAGGCGTTGAGGAAAA 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TTCCCATGATTAAGAATTTTGTGCAGGGGATTGAGTTTGGAGCTAAGGCGTTGAGGAAAA 1008
Query 1003 GCTGGGAAGGGAATTTAGATATCAGGGGTTCAGATAGAACAAAATCCAGCCTTCCCAGAC 1062
||||||||||||||||||| |||||| ||||| | ||||||||| |||| ||||||
Sbjct 1009 GCTGGGAAGGGAATTTAGAAATCAGGAGTTCA-A-----CAAAATCCAACCTTTCCAGAC 1062
Query 1063 GTGATTTAACCCCTGATTCCCGGAGTTTAGCAGCTCCACGGAGAAGCACATCGAGTGAGA 1122
||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 1063 GTGATTTAACCCCTGATTCCCGGAGTTTAGCGGCTCCACGGAAAAGCACATCAAGTGAGA 1122
Query 1123 AGTTGCCAAGCAAACAGGAGAGGGCTAATGTATTTGCAAGATCATCGAAGGAGCACAATA 1182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1123 AGTTGCCAAGCAAACAGGAGAGGGCTAATGTATTTGCAAGATCATCAAAGGAGCACAATA 1182
Query 1183 AGATACAGTCAACCAAGAAAGTCGAGCCAACTGCAGTGTTGGACACCAAAGATAAAACGA 1242
|||| ||||||||||||||| ||||| |||| || | ||||||||||||||||||||||
Sbjct 1183 AGATTCAGTCAACCAAGAAAATCGAGACAACCACAATATTGGACACCAAAGATAAAACGA 1242
Query 1243 GTAGGCCTAAATCTACATCTGTCGAGAAGAAATCTGTTGCAGAGAATGGATTGCCTGGGA 1302
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1243 GTAGGCCTAAATCTACATCTGTCGAGAAGAAATCTATTGCAGAGAATGGGTTGCCTGGGA 1302
Query 1303 ATTTGGTCAAAGTCTCTGTTAATGGTAAAAGATTAGCGGCGGCCAATATCCAATGGAGTT 1362
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1303 ATTTGGTCAAAGTCCCTGTTAATAGTAAAAGATTAGCGGCGGCCAATATCCAATGGAGTT 1362
Query 1363 CACTCCCTCCATCTCTTTCGAGGATGGGACAGGAAGTATTGAGGCATAGAGAAGCTGCTC 1422
|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1363 CACTCCCTTCATCTCTTTCGAGGATGGGACAGGAAGTCCTGAGGCATAGAGATGCTGCTC 1422
Query 1423 AAGTAGTCGCAATAGAGGCCCTGCAAGAAGCCTCTGCTTCCGAGAGCTTACTTCAGTGCC 1482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1423 AAGTTGTCGCAATAGAGGCCCTGCAAGAAGCCTCTGCTTCCGAGAGCTTACTTCAATGCC 1482
Query 1483 TCATTATGTACTCCGATCTTTTGTCAACGGCGAAGGAAGATGATCCATTGCCAGTCGTTG 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TCATTATGTACTCCGATCTTTTGTCAACGGCGAAGGAAGATGATCCATTGCCAGTCGTTG 1542
Query 1543 AGCAGTTCTTGAAGCTCCATTCCGGTTTGAAAAACGTCCAAGTAATAACAGAGTCATTGT 1602
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1543 AGCAGTTCTTGAAGCTCCATTCCGGTTTGAAGAACGTCCAAATAATAACAGAGTCATTGT 1602
Query 1603 CCAAATTACTCTCTTTGATGTCCTCCCCAGATAATGAAGAAAACAGATCCGAGGAAGCTA 1662
|||||||| | || | || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1603 CCAAATTAATTTCGTCGACGTCCTCCCCAGAAAATGAAGAAAACAGATCCGAGGAAGCTA 1662
Query 1663 TAAAAGCGGCATCGGAAAAGCAGAAATTGGCAGCCTCATGGGTCCAAGCTGCGTTAGTCA 1722
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TAAAAGCGGCATCAGAAAAGCAGAAATTGGCAGCCTCATGGGTCCAAGCTGCGTTAGTCA 1722
Query 1723 CTAACTTATCGCCCTTCTCTGTCTACTCCAGCAAACAAGCCAAACTTGCTGCCTCCAGGA 1782
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1723 CTAACTTATCGCCCTTCTCTGTCTACTCCAGCAAACAAGCCAAACTTGCTGCATCCAGAA 1782
Query 1783 GCAAACCCGTGATCATACTCGAGAGCCCGGGTAATAATTCCTCTAGTAAAACCCGTGGGA 1842
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1783 GCAAACCTGTGATCATACTCGAGAGCCCGGGTAATAATTCCTCTGGTAAAACCCGTGGGA 1842
Query 1843 ATATTC-AAAACAAGCCAACGATTGGATCTAAACTCGTAGCACAAGGAATGATCCGTAAA 1901
| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1843 C-AGTCCAAAACAAGCCAACGATTGGATCCAAACTCGTAGCACAAGGCATGATCCGTAAA 1901
Query 1902 CACAGGGAGAACAGTAGCAGCCAGAAAG-CCACCTCGGTAGCAGGGTCAGAGTCTCCACC 1960
||||||||||||||||||||||| |||| ||||||| |||||||| || |||||||||||
Sbjct 1902 CACAGGGAGAACAGTAGCAGCCA-AAAGGCCACCTCAGTAGCAGGTTCGGAGTCTCCACC 1960
Query 1961 GTTAAACTGGGTGAAAGGGAATGGTCTAAACGAGGCAACTGATCTGGCAGAGAAGTTGCA 2020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GCTAAACTGGGTGAAAGGGAATGGTCTAAACGAGGCAACTGATCTGGCAGAGAAGTTGCA 2020
Query 2021 AATGGTTTCACAAGATTGGTTTTTGGGTTTCGTAGAGAGATTCTTAGACGCTGACGTGAT 2080
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2021 AATGGTTTCACAAGATTGGTTTTTGGGTTTCGTAGAGAGATTCTTGGACGCTGATGTGAT 2080
Query 2081 TACATCATCCAGTCTCAGTCTGTCTGATAATGGGCAGATTGCGGGGATGCTGTCTCAGCT 2140
||||||||| | ||| | |||||| || || |||||||| |||||||||||||| |||||
Sbjct 2081 TACATCATCGAATCTGAATCTGTCCGACAACGGGCAGATAGCGGGGATGCTGTCGCAGCT 2140
Query 2141 GAAGAGTGTGAATGATTGGTTAGACGAGATTGGATCGAAAGAGGATGAAGAAGGGTTACA 2200
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2141 GAAGAGTGTGAATGATTGGTTAGACGAGATAGGGTCGAAAGAGGATGAAGAAGGATTACA 2200
Query 2201 AGAAGTCTCTAAGGAAACAATCGATCGATTACGGAAGAAGATCTACGAGTATCTGCTCAC 2260
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2201 AGAAGTCTCTAAAGAAACAATCGATAGATTACGGAAGAAGATCTATGAGTATCTGCTCAC 2260
Query 2261 ACATGTGGAGTCAGCAGCTGCAGCACTTGGTGGTGGTGGTGGCTCAGTCTCTTCTCCTAG 2320
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2261 ACATGTGGAGTCAGCAGCTGCGGCACTTGGTGGTGGTGGTGGCTCAGTCTCTTCTCCTAG 2320
Query 2321 ACCTAAACCAATCGAAACCAAAGCAAAGAGATAAATGATGATGAAGAAGCTTCTACTTGt 2380
||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |
Sbjct 2321 ACCCAAACCAATCGAAACCAAAGCAAAAAGATAAATGATGA--ATGAAGCTTCTACTTAT 2378
Query 2381 tttttttttttCTTGTATATATGAAAATTGGCGGTCAATTTCTTCTGTATAATTCAG--- 2437
|| ||||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2379 TTGTTTTTCTT-T-GTATATATGAAAATTGGCGGCCAATTTCTTCTGTATAATTCAATTC 2436
Query 2438 -G-CATCACTAAGAAGCCTACCGACGTGAAATGTTGGTATTTTTTATTCAGTCAGATACT 2495
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2437 AGACATCACTAAGAAGCCTACCGACGTGAAACGTTGGTATTTTTTATTCAGTCAGATACT 2496
Query 2496 CACTAAAGAGAACCTATTGGTTCGAAAGATTTCAACATATTT 2537
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 2497 GACTAAAGAGAACCTATTGGTTCGAAAGATTTCAATATATTT 2538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96749222300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5