BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08770.1
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919625 jgi|Araly1|919625|scaffold_100906.1 953 0.0
> Ahg919625 jgi|Araly1|919625|scaffold_100906.1
Length=673
Score = 953 bits (516), Expect = 0.0
Identities = 622/673 (92%), Gaps = 8/673 (1%)
Strand=Plus/Plus
Query 29 AACACAAAATCAACCAATTCCGATGAATCAGAAACCTCCGCCGTACGGTTATGGCGGCGC 88
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 3 AACACAAAAT---CCAA-TCCGATGAATCAGAAACCTCCGGCGTACGGTTATGGCGGCGC 58
Query 89 TGGTGGT---GGAGGAGTCGGTCCTTCTTCCACTTCCAACACCACAATCATCGGGACGTT 145
||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 59 TGGTGGTGGAGGAGGAGTTGGACCTTCTTCCTCTTCCAACACCACAATCATCGGGACGTT 118
Query 146 GAGTGCACGCGCCAAGCAGACGACGCAATCGATGATCACGACGCTCCGTCCATGGCGAGA 205
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 GAGTGCACGCGCCAAGCAAACGACGCAATCGATGATCACCACGCTCCGTCCATGGCGAGA 178
Query 206 GATTCTCGATCTGTCCGCGCTCTCTCTCCCTCGCGGGTATGATGAAGCCATGGCGCATCT 265
| |||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||
Sbjct 179 GCTTCTCGATCTGTCCGCACTCTCTCTCCCTCACGGATACGACGAAGCCATGGCGCATCT 238
Query 266 AAAGCACAACATCTCTTATTTCCGTGGAAATTACGCTCTCGCCGTTCTCGCCATTGTTTT 325
|| |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 239 AAGGCACAATATCTCTTATTTCCGTGGAAACTACGCTCTTACCGTCCTCGCCATTGTTTT 298
Query 326 CCTCGGCCTTATTTACCATCCGATGTCTATGATCGCTTTCATCGTCGTCTTCATCGGATG 385
|||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||
Sbjct 299 CCTCGGCCTTATTTACCACCCGATGTCTTTGATCGCCTTCATCGTCGTCTTCATCGGATG 358
Query 386 GATTCTTCTCTATTTCTCTCGAGACGCAAACGATTCGATTGTGATTTCGGGGAAAGAAGT 445
|||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| ||||
Sbjct 359 GATTCTCCTCTATTTCTCGCGAGACTCGAACGATTCGATTGTGATTTCGGGGAAACAAGT 418
Query 446 AGATGACAAGATCGTGCTGGTTTTACTCAGCTTGGTAACGGTTTTGGCATTGGTATATAC 505
||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 419 AGATGACCGGATCGTGCTGGTTTTACTCAGCTTGGTTACGGTTTTGGCATTGGTGTATAC 478
Query 506 AGATGTGGGCGAAAACGTTCTGGTTTCGCTGATCATTGGTTTGCTCATCGTCGGAGCTCA 565
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 AGATGTGGGCGAAAACGTTCTGGTTTCGCTGATCATTGGTTTACTCATCGTCGGAGCTCA 538
Query 566 CGGCGCTTTTCGTAATACCGATGATTTGTTTCTTGATGAAGAAAGTGCTCGCCGTGGTGG 625
|| ||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 539 CGCCGCTTTTCGTAATACTGACGATTTATTTCTTGATGAAGAAAGTGCCCGCCGTGGTGG 598
Query 626 CCTGGTGTCTGCCGGTTCTGGTAACCGGCCACCGTCGAGTTATACCCCAATTTGAGTAAA 685
||||| || |||| ||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 599 ACTGGTATCCGCCGCTTCAGGAAACCGGCCACCATCGAGTTATACCCCAATTTGAGTAAA 658
Query 686 -CCGGTTTGGAGA 697
||||||||||||
Sbjct 659 ACCGGTTTGGAGA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32023250280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5