BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G08780.1

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334161 jgi|Araly1|334161|fgenesh1_pg.C_scaffold_1000726           604    2e-172


> Ahg334161 jgi|Araly1|334161|fgenesh1_pg.C_scaffold_1000726
Length=390

 Score =  604 bits (327),  Expect = 2e-172
 Identities = 369/390 (95%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  66   ATGCAGCAGCAAGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAG  125
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAGCAGCAAGGAAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAG  60

Query  126  AACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACGATATCAAA  185
            ||||| |||| |||||||||||||||||||||| |||| || |||||||| || ||||||
Sbjct  61   AACATCAATACCTTCAGCCGTCTCAACAACAGATTCCACGATCTCGATGATGAAATCAAA  120

Query  186  TCCGCCAAGGAAAAGTGTGAAAATCTAGAGGATGCAGGGAACGAGTTGATCCTTGCTGAT  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCCGCCAAGGAAAAGTGTGAAAATCTAGAGGATGCAGGGAACGAGTTGATCCTTGCTGAT  180

Query  246  GAGGAGATGGTGCGTTTTCAAATAGGAGAAGTGTTTGCTCATGTGCCGAGGGACGACGTA  305
            |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct  181  GAGGAGATGGTGCGGTTTCAAATCGGAGAAGTGTTTGCTCATGTGCCCAGGGACGATGTA  240

Query  306  GAAACAAAGATAGAAGAGATGAAAGAAGCGACCTGCAAAAGCCTTGAGAAACTCGAGCAA  365
            |||||||||||||||||||||||||| || || ||||||||||||||||| || ||| ||
Sbjct  241  GAAACAAAGATAGAAGAGATGAAAGAGGCCACTTGCAAAAGCCTTGAGAAGCTTGAGGAA  300

Query  366  GAGAAGGAATCAATTGTAACACAAATGGCAGCGCTGAAGAAGGTATTGTATGCTAAGTTC  425
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  301  GAGAAGAAATCAATTGTAACACAAATGGCAGCGTTGAAGAAGGTATTGTATGCTAAGTTC  360

Query  426  AAAGATTCTATCAATCTTGAAGAAGACTAG  455
            |||||||||||||||||||||||||| |||
Sbjct  361  AAAGATTCTATCAATCTTGAAGAAGATTAG  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22053930442


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5