BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08790.1 Length=573 Score E Sequences producing significant alignments: (Bits) Value Ahg910584 jgi|Araly1|910584|Al_scaffold_0001_838 931 0.0 > Ahg910584 jgi|Araly1|910584|Al_scaffold_0001_838 Length=573 Score = 931 bits (504), Expect = 0.0 Identities = 550/573 (96%), Gaps = 0/573 (0%) Strand=Plus/Plus Query 1 ATGGTGAGGGTTGGAGAAGCATTGAGTGTATCAACCTCATCGTCGTCATCTTTCTACGAC 60 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1 ATGGTGAGGGTAGGAGAAGCATTGAGTGTATCAACCTCATCGTCTTCATCGTTCTACGAT 60 Query 61 AGCGAAGTAGAAGAGCTTCAAAAGATGCCATTGGAACCACCGAAAGCTAAGGCTAAGAAA 120 ||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||| Sbjct 61 AGCGAAGTAGAAGAGCTTCAAAAGATGCCATTGGAACCACCTAGAGTTAAGACTAAGAAA 120 Query 121 CGTCTCTCGAAGCAACTCTCCATGTTAGAGACCCGTAGAGACATCGCATGGGAGCGTCGC 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTCTCTCCAAGCAACTCTCCATGTTAGAGACCCGTAGAGACATCGCATGGGAGCGTCGC 180 Query 181 CGTCGCCAGATGCTCCATCACCTTGAGAAGCATAACGAAGGAGGAGATGACTTGACGGAC 240 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGCCGCCAGATGCTTCATCACCTTGAGAAGCATAACGAAGGAGGAGATGACTTGACGGAC 240 Query 241 GAGGACTTGAGTGAGCTCAAAGGATCTATTGAGTTAGGGTTCGGGTTTAACGAGGAGCAA 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 GAGGACTTGAGTGAGCTCAAAGGTTCTATTGAGTTAGGGTTCGGGTTTAACGAGGAGCAA 300 Query 301 GGGCAACATCTTACAACTACATTGCCTGCATTGGACCTTTACTTCGCTGTGACTCGTCAG 360 ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 301 GGGCAACATCTTACACCTACATTGCCTGCTTTGGACCTTTACTTCGCTGTGACCCGTCAG 360 Query 361 ATCTCGCCGGTTTCTACACCAGGCAGTGGTGGATCTTCTTCATCCTCCCGTCCTACTTCC 420 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 361 ATCTCGCCGGTTTCTACACCAGGCAGCGGTGGATCTTCTTCATCCTCCCGACCTACTTCT 420 Query 421 CTCGGAGACCGATCTTCCTCTTTTGGTAGTCCAATAAGCGACTCTGATTCTTTGAAGGTT 480 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 421 CTTGGAGACCGATCTTCCTCTTTTGGTAGTCCTATAAGCGACTCTGATTCTTTGAAGGTT 480 Query 481 ATGTCTCCAGGAGATGATCCTCAACAGGTTAAAACGAGACTGAGGCATTGGGCACAAGCT 540 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATGTCTCCAGGAGATAATCCTCAACAGGTTAAAACGAGACTGAGGCATTGGGCACAAGCT 540 Query 541 GTGGCATGTTCTGTGATACAATCTTCCAATTAA 573 || ||||||||| |||||||||||||||||||| Sbjct 541 GTAGCATGTTCTATGATACAATCTTCCAATTAA 573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20947418361 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5