BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08790.1
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910584 jgi|Araly1|910584|Al_scaffold_0001_838 931 0.0
> Ahg910584 jgi|Araly1|910584|Al_scaffold_0001_838
Length=573
Score = 931 bits (504), Expect = 0.0
Identities = 550/573 (96%), Gaps = 0/573 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAGGGTTGGAGAAGCATTGAGTGTATCAACCTCATCGTCGTCATCTTTCTACGAC 60
||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 ATGGTGAGGGTAGGAGAAGCATTGAGTGTATCAACCTCATCGTCTTCATCGTTCTACGAT 60
Query 61 AGCGAAGTAGAAGAGCTTCAAAAGATGCCATTGGAACCACCGAAAGCTAAGGCTAAGAAA 120
||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||
Sbjct 61 AGCGAAGTAGAAGAGCTTCAAAAGATGCCATTGGAACCACCTAGAGTTAAGACTAAGAAA 120
Query 121 CGTCTCTCGAAGCAACTCTCCATGTTAGAGACCCGTAGAGACATCGCATGGGAGCGTCGC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTCTCTCCAAGCAACTCTCCATGTTAGAGACCCGTAGAGACATCGCATGGGAGCGTCGC 180
Query 181 CGTCGCCAGATGCTCCATCACCTTGAGAAGCATAACGAAGGAGGAGATGACTTGACGGAC 240
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCCGCCAGATGCTTCATCACCTTGAGAAGCATAACGAAGGAGGAGATGACTTGACGGAC 240
Query 241 GAGGACTTGAGTGAGCTCAAAGGATCTATTGAGTTAGGGTTCGGGTTTAACGAGGAGCAA 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGGACTTGAGTGAGCTCAAAGGTTCTATTGAGTTAGGGTTCGGGTTTAACGAGGAGCAA 300
Query 301 GGGCAACATCTTACAACTACATTGCCTGCATTGGACCTTTACTTCGCTGTGACTCGTCAG 360
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 GGGCAACATCTTACACCTACATTGCCTGCTTTGGACCTTTACTTCGCTGTGACCCGTCAG 360
Query 361 ATCTCGCCGGTTTCTACACCAGGCAGTGGTGGATCTTCTTCATCCTCCCGTCCTACTTCC 420
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 361 ATCTCGCCGGTTTCTACACCAGGCAGCGGTGGATCTTCTTCATCCTCCCGACCTACTTCT 420
Query 421 CTCGGAGACCGATCTTCCTCTTTTGGTAGTCCAATAAGCGACTCTGATTCTTTGAAGGTT 480
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 CTTGGAGACCGATCTTCCTCTTTTGGTAGTCCTATAAGCGACTCTGATTCTTTGAAGGTT 480
Query 481 ATGTCTCCAGGAGATGATCCTCAACAGGTTAAAACGAGACTGAGGCATTGGGCACAAGCT 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGTCTCCAGGAGATAATCCTCAACAGGTTAAAACGAGACTGAGGCATTGGGCACAAGCT 540
Query 541 GTGGCATGTTCTGTGATACAATCTTCCAATTAA 573
|| ||||||||| ||||||||||||||||||||
Sbjct 541 GTAGCATGTTCTATGATACAATCTTCCAATTAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20947418361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5