BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08800.1
Length=4026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470953 jgi|Araly1|470953|fgenesh2_kg.1__907__AT1G08800.2 5252 0.0
> Ahg470953 jgi|Araly1|470953|fgenesh2_kg.1__907__AT1G08800.2
Length=4058
Score = 5252 bits (2844), Expect = 0.0
Identities = 3504/3817 (92%), Gaps = 67/3817 (2%)
Strand=Plus/Plus
Query 212 AAAACATTTGAAGCCTGATTGATTCTTGATCTTATGTTTCTGCAAAGAGTTGGCTACTAG 271
|||| ||||||||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct 284 AAAAGATTTGAAGCCTGATTGAGTCTTGATCTTATGTTTCTGCAAAAAGATGCCTACTAG 343
Query 272 ACAAACGTCTGCAGTAAAATTACAGATGGGTTCACGGAGTTTCACTAGAGCTTTGGCATT 331
| ||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 344 AAAAATGTCTGCAGTTAAATCACAGATGGGTTCCCGGAGTTTCACTAGAGCTTTGGCATT 403
Query 332 AGCCTTTAATGAGTGGCTACTGATGTTCATGCTCTTCGTTAACTCCATATTCTCTTACGT 391
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 404 AGCCTTTAATGAGTGGCTACTGATGTTCATGCTCTTTGTTAACTCCATCTTCTCCTACGT 463
Query 392 GATCGCGAGGTTTGCAGATTACTCTGAGCTTCAATCTCCATGTCTGATGTGCTCAAATCT 451
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GATCGCTAGGTTTGCAGATTACTCTGAGCTTCAATCTCCATGTCTGATGTGCTCAAATCT 523
Query 452 TGATCATATTCTCAGGAGGACAAAAGATTTGAAGAAAACTCATTGGGATATTATTTGCTC 511
||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 524 TGATCATATTCTCGGGAGGACAAAACATTCGAAGAAAACTCATTGGGATATGATTTGCTC 583
Query 512 TAAACACAAATCAGAGATCTCTTCATTGGTTTACTGTCATGCTCACGGCAAGCTTGTTGA 571
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 584 TAAACACAAATCAGAGATCTCGTCATTGGTTTACTGTCATGCTCACGGCAAGCTTGTTGA 643
Query 572 TGTCCGTGGAATGTGTGAGACTTGTCTTTTCTCGTTTGCTACAACCAATAAGTCCAATGC 631
||||||||||||||| || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct 644 TGTCCGTGGAATGTGCGAAACTTGCCTCTTCTCTTTTGCTACAACCAATAAGTCAAATGC 703
Query 632 TGAAACTTACAGATTGTTGGTTGGTAAACTGGGTGA-AGATTCTCACTTCGGATCCAAGA 690
|||||||||||||||||||||||||||| ||||||| | ||||| |||| ||||||||||
Sbjct 704 TGAAACTTACAGATTGTTGGTTGGTAAATTGGGTGATA-ATTCTTACTTTGGATCCAAGA 762
Query 691 GTGATCGAAGCA-AATATCCAAATTGCTCTAAGCTTACAGATTGTACATGTTGTAATCAG 749
||||||| |||| || |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 763 GTGATCGCAGCACAA-ATCCAAATTGCTCTAAACTTACAGATTGTACATGTTGCAATCAG 821
Query 750 TTGTGGACGCCTCAAACCGCTGCTACTCAGGTGGCTGAACGGGAAATTCTACCCAAGATT 809
|||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 822 TTGTGGGGGCCTCAAACCGCTGCTACTCTGGTGGCTGAACGGGAAATGCTACCCAAGATT 881
Query 810 GGTTTGCTTGGTAAAATAAGAACCGGGAAGCAGTCTGCGCCCAAGAAAAGTGTCAGCTTC 869
||| ||||| ||||| | ||||||||||||| ||| | |||||||||||||||||||||
Sbjct 882 GGTCTGCTTAGTAAAGTCCGAACCGGGAAGCAATCTACACCCAAGAAAAGTGTCAGCTTC 941
Query 870 AATCATTTGCCTGATGTTGGGTACACTGAGCTAAAGATTCATTCAGATACTGAATCAGAG 929
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 942 AATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATTCATTCAGATACTGAATCAGAA 1001
Query 930 GCTGTGTTTTCAGATACTGAACCAAAGCAAGAATCTTCACT-TAACCATTTGCCAC-C-T 986
||| | ||||||||||||||||||||||||||||||||| | || |||||| ||| | |
Sbjct 1002 GCTCTATTTTCAGATACTGAACCAAAGCAAGAATCTTCA-TCTAGCCATTT--CACTCAT 1058
Query 987 GTTGGGTACAATGAGCCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGGGAAACCATCT 1046
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1059 GTTGGGTACAATGAGCCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGAGAAACCATCT 1118
Query 1047 ACACCCAAGAAGAGTGTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAG 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ACACCCAAGAAGAGTGTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAG 1178
Query 1107 ATTCATTCAGATACTGAATCAGAAGCTGTATTCTCAGAAGATGAATGTGTCGTCCTTAAA 1166
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 1179 ATCCATTCAGATACTGAATCAGAAGCTGTATTTTCAGAAGATGAAGGTGTCGTCCTAAAA 1238
Query 1167 GATGAGGATCATAAGTATCAAATAGTGGATCTTCAGACTCATCCGATTATCACCTTGCCT 1226
|||||||||||||||||||||| ||||||||| |||||| ||| ||||||||| |||||
Sbjct 1239 GATGAGGATCATAAGTATCAAACCGTGGATCTTGAGACTCCTCCAATTATCACCCTGCCT 1298
Query 1227 TATGATTTGGCTACCGACAAGCTGCTAAACTTTGATTTCCCTTTGGAGCCCTT-CGTGAC 1285
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1299 TATGATTTGGCTACCGACAAGCTGCTAAACTTTGATTTCCCTTTGGAGCCTTTAC-TGAC 1357
Query 1286 TCGAAATGACCGAGAGGAAGTTCAGTTGCAAGAGACCAATTGGAGGACTTATTCCTCATT 1345
|| |||||||||||| |||||||| |||||||||| ||| ||||| ||||||||||||||
Sbjct 1358 TCTAAATGACCGAGAAGAAGTTCATTTGCAAGAGAGCAAATGGAGAACTTATTCCTCATT 1417
Query 1346 TCCTGTGCTTATTCCAGTTAATGATGTGCCTGAAACATCAGAGAAGGTGTTCAAGGAGGA 1405
||| | | |||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 1418 TCCCGAGATTATCCCAGTTAATGATGTGCCTGAAGCATCAGAGAAGGTTTTTAAGGAGGA 1477
Query 1406 AGAGATCAATTCATTAGATAATCTTTTCTTAACATCACGCGCCATGAAACATTTTGCAGC 1465
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1478 AGAGATCAATTCATTAGATAATCTTTTCTTAACATCACGCGCCATGGAACATTTTGCAGC 1537
Query 1466 ---TGCAAAGGTGAAAGAAGAGCCGATTCGCCTCCAAGATATTTCCTCAACACCAGATGT 1522
| ||||| |||||||||||||||||| ||||||| |||||||| |||||||||| |
Sbjct 1538 TTTTCCAAAGAAGAAAGAAGAGCCGATTCGACTCCAAGGTATTTCCTTAACACCAGAT-T 1596
Query 1523 T-AAGGAAAATCCTGCAAATGCCTCCTTGATGGAGGAGACTGAGCTTATTTGTCTCAGTG 1581
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1597 TCAAGGAAAATCCTGCAAATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGTCTCAATG 1656
Query 1582 ATGTTACTGCAACATCAGGCGCCATGGAACATTCTGAAGTTATTCTAAAGGAAAGAGAAG 1641
|| ||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1657 ATTTTACTTCAACATCACGCGCCATGGAACATTCTGAAGTTATTTTAAAGGAGAGAGAAG 1716
Query 1642 AACTGATTCACCTCCAAGATATTTCTGTAACACCAGATTTTAAGGAAAATCCTGCAAATG 1701
||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 AACCGCTTCACCTCCTAGATATTTCTGTAACACCAGATTTTAAGGAAAATCCTGCAAATT 1776
Query 1702 CCTCCTTATTGGAGGAGACTGAGCTTATCTGTC-TCAATGATGTTACTTCACCATTACGC 1760
|||| ||| ||||||||||||||||| |||| | |||||||||||| |||||||| |||
Sbjct 1777 CCTCATTAATGGAGGAGACTGAGCTTGTCTG-CTTCAATGATGTTATTTCACCATCACGT 1835
Query 1761 GCCGTGGAACATTCTGCAGTTCTTTTAAAGGATAAAGTAGAGCCGATTCGCCTCCAAGAT 1820
||| | |||||||||| || | ||||||||||||||| |||||||||||||||||||||
Sbjct 1836 GCCATTGAACATTCTGAAGCTGTTTTAAAGGATAAAGAAGAGCCGATTCGCCTCCAAGA- 1894
Query 1821 GGTGGTTCTTTAACACCAGATTTTATGGAAAATTCTGCAAATGCCTCCATATTGGAAGAG 1880
| |||||| |||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct 1895 --TAGTTCTTCAACACCAGATTTTATGGAAAATCCTGCAAATGCCCCCTTAATGGAAGAG 1952
Query 1881 ACTGAGCTTATTTGCGTCAATGATGTTACTTCAACATCACGCACCATGGGACATTCTTCA 1940
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||
Sbjct 1953 ACTGAGCTTATTTGCGTCAATGATGTTACTTCAACATCACACGCCATGGAACATTCTGCA 2012
Query 1941 GTTGTTTTAAAGGAGAATGAAGAGCCGATTCGCTTCCAAGATAGT-TCTTTAACACCAGA 1999
||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 2013 GTTATTTTAAAGGAGAATGAAGAGCCGATTTGCTTCCAAGATA-TATCTTTAACACCAGA 2071
Query 2000 TTTTAAGGAAAATCCTGCAAGTACCTTCTTAGTGGAGGAGACTGAGCTTATCTGCCTCAA 2059
||| |||||| ||||||||| | |||||||| ||||||||||| ||||||||||||||||
Sbjct 2072 TTTGAAGGAAGATCCTGCAAATGCCTTCTTAATGGAGGAGACTAAGCTTATCTGCCTCAA 2131
Query 2060 TGATGTTACTTCACCATCACGCGCCATGGAACATTCCACAGTTTTTATAGAGGAGAAAGA 2119
||| ||||||||| ||||| |||||||||||||||| ||||| |||||||||| ||||
Sbjct 2132 TGAAGTTACTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAGGATAAAGC 2191
Query 2120 AGAGCTGGTTCGCCACCAAAATATTACATT-AACA-CAGGATTTTATGGAAAATCCGGCA 2177
|||||||||||||||| || |||| || || |||| || ||||||| ||||||||| |||
Sbjct 2192 AGAGCTGGTTCGCCACGAAGATATAAC-TTCAACACCA-GATTTTAAGGAAAATCCTGCA 2249
Query 2178 AATTCCTCCTTAAGGGAAGAAACTGAGCTTATTTGCCTCAATGATGTTACTTCAACATCA 2237
||| ||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct 2250 AATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACTTCAACATCA 2309
Query 2238 GAGGTTGCTGAAACTCCTGAAGATGTCTTAGAGGGAATTGAACTTATGTCAATCCATGAT 2297
|||| ||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 2310 GAGGCTGCTGAAACTCTTGAAGTTGTTTTAGAGGGAATTGAACTTATGTCCATCCATGAT 2369
Query 2298 ATA-TCTCTAGACGAGGTTTCTGAATCAGTCACTACAAATCAAACCTCTGTTGAGATTTC 2356
| | ||||| || |||||| || ||||| |||||||| || |||||||||||||||| ||
Sbjct 2370 A-AGTCTCTTGAAGAGGTTCCTCAATCACTCACTACAGATGAAACCTCTGTTGAGATGTC 2428
Query 2357 AAAGGAGAGGGACACTGACCAAGCTGATATTACCTCTCTGGAATCTGAATATATAGTTGT 2416
||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2429 AAAGGAGAGCGACACTCACCAAGCTGATATTAACTCTCTGGAATCTGAATATATTGTTGT 2488
Query 2417 ACCATCTCCAAATTCCATGCCTGAAAATTCAACCGATAATTGTGTATCAGATAA-AAAGG 2475
|||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |
Sbjct 2489 ACCATCTCCAAATTCCATGCCTGAAAATTCAACCGAAAATTGTGTATCAGACAACAAA-G 2547
Query 2476 AAATGAAAGAGACATCTCTTA-GGATCTCTTCATTGTCTGAAATGGCTCCACGGGACGTC 2534
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2548 AAATGAAAGAGACATCTCTTACGG-TCTCTTCATTGTCTGAAATGGCTCCACGGGACGTC 2606
Query 2535 ACTTCTCACACAGAAGCAGCTCTTGAGTCAGAATCTTCTTCCTTCAACTCAATGTCAGTG 2594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2607 ACTTCTCACACAGAAGCAGCTCTTGAGTCAGAATCTTCTTCCTTCAACTCAATGTCGGTG 2666
Query 2595 GCAGCAGAAACAAACCAATATTCAGGTGAATTACTGGATCTTGCAGATGCATACAATATC 2654
|||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 2667 GCAGCAGAAACAAATCAATATTCAGGTGAGTTACTGGACCTTGCGGATGCATATAATATC 2726
Query 2655 GTTGTAGGAAACGAAGGTCACTATGATAGTAATGGAAGACAACAAATAGAGAATTGGATG 2714
|||||||||| || ||| || | ||||| |||||||||||| |||||||||||||||||
Sbjct 2727 ATTGTAGGAAATGAGGGTAACAACGATAGCAATGGAAGACAAAAAATAGAGAATTGGATG 2786
Query 2715 AAGAAAGATACGTCTAGAGTTAGCGAAGACCTTAAAGCACTTCTTACTCAAATATCAGCT 2774
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2787 AAGAAAGATACTTCTAGAGTTAGCGAAGACCTTAAAGCACTTCTAACTCAAATATCAGCT 2846
Query 2775 TCTCGTGGGATAGAGTTTTTGTCACCTAGAGATGTAAGCCCCAAGATTTCTGTTAACAGT 2834
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 2847 TCTCGAGGGATAGAGTTTTTGTCGCCTAGAGATGTAAGCCCGAAGATATCTGTTAACAGT 2906
Query 2835 AGCGATCAAGAGACAAAGAACCTAGATCATGATATGCAGCTGCTACTTCAAAAGAGAATG 2894
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2907 AGTGATCAGGAGACAAAGAACCTAGATCATGATATGCAGCTGCTACTTCAGAAGAGAATG 2966
Query 2895 CTTGAAAGGAACGAGAGTAACTTATCGTTGGAAGGAGTTTCTGTGACTGAAATCGAGGGT 2954
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 2967 CTTGAAAGGAACGAGAGTAACTTATCGTTGGAAGAAGTCTCTGTGAGTGAAATCGAGGGA 3026
Query 2955 GAAAGTGAGGGTGATCGGTTGAAAAGACAGGTTGATTATGATAGGAAACTGCTGACTGGT 3014
||||||||| |||||||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 3027 GAAAGTGAGAGTGATCGGTTGAAAAGGCAGGTTGATTACGACAGGAAATTGCTGACTGGT 3086
Query 3015 TTATATAAAGAATTGGAGGAAGAAAGAAGCGCTTCAGCGGTTGCTACAAATCAAGCAATG 3074
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 3087 TTATATAAAGAATTAGAGGAAGAAAGAAGTGCTTCAGCGGTAGCTACAAATCAAGCAATG 3146
Query 3075 GCTATGATAACGAGGTTGCAGGAAGAGAAGGCGTCATTCCAAATGGAGGCTTTGCAGAAC 3134
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3147 GCTATGATTACGAGGTTGCAGGAAGAGAAGGCGTCATTCCAAATGGAAGCTTTGCAGAAC 3206
Query 3135 CTGAGGATGATGGAGGAGCAAGCAGAGTACGATATGGAAGCAATACAGAGACTGAATGAT 3194
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 3207 CTGAGGATGATGGAAGAGCAAGCAGAGTATGACATGGAAGCAATACAGAGACTGAATGAT 3266
Query 3195 TTACTTGTTGAGAGAGAAAAACTAATACAAGATTTAGAAGCTGAGATTGAATACTTCCGG 3254
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3267 TTACTTGTTGAGAGAGAAAAACTAATTCAAGATTTAGAAGCTGAGATTGAATACTTCCGG 3326
Query 3255 GACCAGACCCCTCAGAAGAAGAATAAGCTAGATGTTGCAGAAAAAGTGACCGAGATGGAT 3314
||||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 3327 GACCAGACCCCGCAGAAGAAGAATAAGCTAGATGTTCCAGAAAAGGTGACTGAGATGGAT 3386
Query 3315 TCCCCTAGTGAGGGAATGAGCAACAAGATACAGAGTTGTTTAGTTGGGTTCGACGAAGAG 3374
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3387 TCGCCTAGTGAGGGAATGAGCAACAAGATACAGAGTTGTTTAGTTGGGTTCGACGAAGAG 3446
Query 3375 AGATTATACATCACCAGTTGTCTGGAGAAGATTGAAAACAGAGTAAATGGCAAGGCTCAT 3434
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 3447 AGATTATATATCACCAGTTGTTTGGAGAAGATTGAAAACAGAGTAAATGGCGAGGCTCAT 3506
Query 3435 GACGATAATCTACCAGCACAAGAATCTGTTTCTGAGCTACATGAGAGAGTAGAAAGGCTG 3494
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 3507 GGCGATAATCTACCAGCACAAGAATCTGTCTCTGAGCTACATGAGAGAGTAGAAATGCTG 3566
Query 3495 AAGGGAGACTTATACTTCCTAGAACAAGTTATGAATTCTCTTGGCCATGGAAATGAAGGC 3554
||||||||||||||||| |||||||| |||||||||||||| || || || || ||||||
Sbjct 3567 AAGGGAGACTTATACTTTCTAGAACAGGTTATGAATTCTCTCGGGCACGGGAAGGAAGGC 3626
Query 3555 GTGCAATTTGTAAAGGAAATAGCTTCTCATTTGCAAACTCTGCGGAGTCTCAGCATGAAA 3614
||| ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3627 GTGGAATTTGTCAAGGAAATAGCTTCTCATTTGCAAACTCTGCGGAGTGTCGGCATGAAA 3686
Query 3615 AGACAAGATCAGACTGAGTGTTGATGTCCTGAGTAACAATCTTCACAAAGACACCTTTGT 3674
|||||| |||| || ||| ||||||| |||| ||||||| |||||||||| |||||||||
Sbjct 3687 AGACAAAATCATACAGAGAGTTGATGCCCTGGGTAACAACCTTCACAAAGTCACCTTTGT 3746
Query 3675 GGAGAGGATATTGTAGAGGAAACTAAA-AGAAGTTCAAGA-T--TCA-AGAAGCTTAAAG 3729
||||||||||||||||||||||||||| | |||||||||| | | | | ||||||||||
Sbjct 3747 GGAGAGGATATTGTAGAGGAAACTAAACA-AAGTTCAAGAGTGGTGAGAAAAGCTTAAAG 3805
Query 3730 AAACTGTATAGCATCGTCTTCATTGCCTTCCCCTTTCGTATACGATAATCTCAGAATTCT 3789
|||||||||||||| | | || | | |||||| | ||| ||||| || |
Sbjct 3806 GAACTGTATAGCATC--C--C-TT---T-C-------GTATACAAAAATATCAGATTT-T 3848
Query 3790 TTACGATTTCATTTTTGGGTTTGGTGTTCATAATTTCCTTATGGGTTTTCATATTCTTTG 3849
|||| |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||
Sbjct 3849 TTACAATTTCATTTTTGGGTTTGGTGTTCATAATT-CCTTGTGGGTTTTCACATTCTTTG 3907
Query 3850 TGTTTATTTTGCATTTTTCTTCTAG-TTTTGAGTGAAGAGTGAATGTAGGTTTTGTTCTG 3908
||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 3908 TGTTTGTTTTACATTTTTCTTCTAGATTTTGAGTGAAGAGTGAATGTGGGTTTTGTTCTG 3967
Query 3909 AAGTTCTCATTTGAttttttttATTAGGTTGGTTGATACTTTTGTTTAGCATGTCAAAAG 3968
|||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||
Sbjct 3968 AAGTTCTCATTTGATTTTTTTTTTTAGATTG----ATACTTTTGTTTAGCATGTTAAAAG 4023
Query 3969 --TCATGCAACTTTGTTAAACTTGTTGTACATTTCTT 4003
|||||||||||||| || ||| |||||||||||||
Sbjct 4024 AGTCATGCAACTTTGT-AA-CTTATTGTACATTTCTT 4058
Score = 621 bits (336), Expect = 1e-176
Identities = 556/661 (84%), Gaps = 20/661 (3%)
Strand=Plus/Plus
Query 1429 TTTT-CTT-AACATCACGCGCCATGAAACATTTTGCAG---CTGCAAAGGTGAAAGAAGA 1483
|||| ||| |||||||||||||||| |||||| || || | ||||| || ||||||
Sbjct 1658 TTTTACTTCAACATCACGCGCCATGGAACATTCTGAAGTTATTTTAAAGGAGAGAGAAGA 1717
Query 1484 GCCGATTCGCCTCCAAGATATTTCCT-CAACACCAGATGTTAAGGAAAATCCTGCAAATG 1542
||| ||| ||||| |||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1718 ACCGCTTCACCTCCTAGATATTT-CTGTAACACCAGATTTTAAGGAAAATCCTGCAAATT 1776
Query 1543 CCTCCTTGATGGAGGAGACTGAGCTTATTTGTC-TCAGTGATGTTACTGCAACATCAGGC 1601
|||| || |||||||||||||||||| | || | ||| |||||||| | || ||||| |
Sbjct 1777 CCTCATTAATGGAGGAGACTGAGCTTGTCTG-CTTCAATGATGTTATTTCACCATCACGT 1835
Query 1602 GCCATGGAACATTCTGAAGTTATTCTAAAGGA-AAGAGAAGAACTGATTCACCTCCAAGA 1660
||||| ||||||||||||| | || ||||||| || |||||| | ||||| |||||||||
Sbjct 1836 GCCATTGAACATTCTGAAGCTGTTTTAAAGGATAA-AGAAGAGCCGATTCGCCTCCAAGA 1894
Query 1661 TATTTCTGT-AACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTATTGGAGGAGA 1719
|| |||| | |||||||||||||| ||||||||||||||||||| ||||| |||| ||||
Sbjct 1895 TAGTTCT-TCAACACCAGATTTTATGGAAAATCCTGCAAATGCCCCCTTAATGGAAGAGA 1953
Query 1720 CTGAGCTTATCTGTC-TCAATGATGTTACTTCACCATTACGCGCCGTGGAACATTCTGCA 1778
|||||||||| || | ||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 1954 CTGAGCTTATTTG-CGTCAATGATGTTACTTCAACATCACACGCCATGGAACATTCTGCA 2012
Query 1779 GTTCTTTTAAAGGATAAAGTAGAGCCGATTCGCCTCCAAGATGGTGGTTCTTTAACACCA 1838
||| |||||||||| || | |||||||||| || |||||||| | ||||||||||||
Sbjct 2013 GTTATTTTAAAGGAGAATGAAGAGCCGATTTGCTTCCAAGAT-AT--ATCTTTAACACCA 2069
Query 1839 GATTTTATGGAAAATTCTGCAAATGCCTCCATATTGGAAGAGACTGAGCTTATTTGCGTC 1898
||||| | |||| || |||||||||||| | || |||| |||||| ||||||| ||| ||
Sbjct 2070 GATTTGAAGGAAGATCCTGCAAATGCCTTCTTAATGGAGGAGACTAAGCTTATCTGCCTC 2129
Query 1899 AATGATGTTACTTCAACATCACGCACCATGGGACATTCTTCAGTTGTTTTAAAGGAGAAT 1958
||||| ||||||||||||||| || |||||| ||||||| |||||||| || |||| ||
Sbjct 2130 AATGAAGTTACTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAGGATAAA 2189
Query 1959 GAAGAGCCGATTCGCTTCCAAGATAGT-TCTTTAACACCAGATTTTAAGGAAAATCCTGC 2017
| ||||| | ||||| | |||||| | ||| |||||||||||||||||||||||||||
Sbjct 2190 GCAGAGCTGGTTCGCCACGAAGATA-TAACTTCAACACCAGATTTTAAGGAAAATCCTGC 2248
Query 2018 AAGTACCTTCTTAGTGGAGGAGACTGAGCTTATCTGCCTCAATGATGTTACTTCACCATC 2077
|| | ||| |||| ||||||||||||||||||| ||||||||||||| ||||||| ||||
Sbjct 2249 AAATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACTTCAACATC 2308
Query 2078 A 2078
|
Sbjct 2309 A 2309
Score = 508 bits (275), Expect = 9e-143
Identities = 420/489 (86%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 1438 CATCACGCGCCA-TGAAACATTTTGCAGCTG---CAAAGG-TGAAAGAAGAGCCGATTCG 1492
||||||| |||| || |||||| || ||||| ||||| | |||||||||||||||||
Sbjct 1828 CATCACGTGCCATTG-AACATTCTGAAGCTGTTTTAAAGGAT-AAAGAAGAGCCGATTCG 1885
Query 1493 CCTCCAAGATATTTCCTCAACACCAGATGTTAAGGAAAATCCTGCAAATGCCTCCTTGAT 1552
||||||||||| ||| |||||||||||| ||| ||||||||||||||||||| |||| ||
Sbjct 1886 CCTCCAAGATAGTTCTTCAACACCAGATTTTATGGAAAATCCTGCAAATGCCCCCTTAAT 1945
Query 1553 GGAGGAGACTGAGCTTATTTGTC-TCAGTGATGTTACTGCAACATCAGGCGCCATGGAAC 1611
||| ||||||||||||||||| | ||| |||||||||| |||||||| |||||||||||
Sbjct 1946 GGAAGAGACTGAGCTTATTTG-CGTCAATGATGTTACTTCAACATCACACGCCATGGAAC 2004
Query 1612 ATTCTGAAGTTATTCTAAAGGA-AAGAGAAGAACTGATTCACCTCCAAGATATTTCTGTA 1670
|||||| ||||||| ||||||| || ||||| | |||| | |||||||||| ||| ||
Sbjct 2005 ATTCTGCAGTTATTTTAAAGGAGAAT-GAAGAGCCGATTTGCTTCCAAGATATATCTTTA 2063
Query 1671 ACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTATTGGAGGAGACTGAGCTTATC 1730
||||||||||| |||||| ||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 2064 ACACCAGATTTGAAGGAAGATCCTGCAAATGCCTTCTTAATGGAGGAGACTAAGCTTATC 2123
Query 1731 TGTCTCAATGATGTTACTTCACCATTACGCGCCGTGGAACATTCTGCAGTTCTTTTAAAG 1790
|| |||||||| ||||||||| ||| | ||||| ||||||||||||||||| || || ||
Sbjct 2124 TGCCTCAATGAAGTTACTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAG 2183
Query 1791 GATAAAGTAGAGCCGATTCGCCTCCAAGATGGTGGTTCTTTAACACCAGATTTTATGGAA 1850
||||||| ||||| | |||||| | ||||| | ||| |||||||||||||| ||||
Sbjct 2184 GATAAAGCAGAGCTGGTTCGCCACGAAGATA-TAA--CTTCAACACCAGATTTTAAGGAA 2240
Query 1851 AATTCTGCAAATGCCTCCATATTGGAAGAGACTGAGCTTATTTGCGTCAATGATGTTACT 1910
||| |||||||||||||| || |||| |||||||||||||||||| ||||||||| ||||
Sbjct 2241 AATCCTGCAAATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACT 2300
Query 1911 TCAACATCA 1919
|||||||||
Sbjct 2301 TCAACATCA 2309
Score = 483 bits (261), Expect = 6e-135
Identities = 422/496 (85%), Gaps = 25/496 (5%)
Strand=Plus/Plus
Query 1753 CATTACGCGCCGTGGAACATTCTGCAGTTCTTTT--AAAGGATAAAGTAGAGCCGATTCG 1810
||| ||||||| ||||||||| ||||| ||||| |||| | |||| ||||||||||||
Sbjct 1510 CATCACGCGCCATGGAACATTTTGCAG--CTTTTCCAAAGAAGAAAGAAGAGCCGATTCG 1567
Query 1811 CCTCCAAGATGGTGGTTCTTTAACACCAGATTTTATGGAAAATTCTGCAAATGCCTCCAT 1870
|||| | | ||| ||| |||||||||||||| | ||||||| |||||||||||||| |
Sbjct 1568 ACTCC-A-A-GGTATTTCCTTAACACCAGATTTCAAGGAAAATCCTGCAAATGCCTCCTT 1624
Query 1871 ATTGGAAGAGACTGAGCTTATTTG-CGTCAATGATGTTACTTCAACATCACGCACCATGG 1929
| |||| ||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 1625 AATGGAGGAGACTGAGCTTATTTGTC-TCAATGATTTTACTTCAACATCACGCGCCATGG 1683
Query 1930 GACATTCTTCAGTTGTTTTAAAGGAGA-ATGAAGAGCCGATTCGCTTCCAAGATAGTTCT 1988
||||||| |||| |||||||||||| | ||||| ||| ||| | ||| ||||| ||||
Sbjct 1684 AACATTCTGAAGTTATTTTAAAGGAGAGA-GAAGAACCGCTTCACCTCCTAGATATTTCT 1742
Query 1989 TTAACACCAGATTTTAAGGAAAATCCTGCAAGTACCTTC-TTAGTGGAGGAGACTGAGCT 2047
|||||||||||||||||||||||||||||| | ||| | ||| ||||||||||||||||
Sbjct 1743 GTAACACCAGATTTTAAGGAAAATCCTGCAAATTCCT-CATTAATGGAGGAGACTGAGCT 1801
Query 2048 TATCTGCCTCAATGATGTTACTTCACCATCACGCGCCATGGAACATTCC-ACAG-T-TTT 2104
| ||||| |||||||||||| |||||||||||| ||||| |||||||| | || | |||
Sbjct 1802 TGTCTGCTTCAATGATGTTATTTCACCATCACGTGCCATTGAACATTCTGA-AGCTGTTT 1860
Query 2105 TATAGAGGAGAAAGAAGAGCTGGTTCGCCACCAAAATA-TTACATT-AACAC-AGGATTT 2161
|| | |||| |||||||||| | |||||| |||| ||| || | || ||||| || ||||
Sbjct 1861 TA-A-AGGATAAAGAAGAGCCGATTCGCCTCCAAGATAGTT-C-TTCAACACCAG-ATTT 1915
Query 2162 TATGGAAAATCCGGCAAATTCCTCCTTAAGGGAAGAAACTGAGCTTATTTGCCTCAATGA 2221
|||||||||||| |||||| || |||||| |||||| ||||||||||||||| |||||||
Sbjct 1916 TATGGAAAATCCTGCAAATGCCCCCTTAATGGAAGAGACTGAGCTTATTTGCGTCAATGA 1975
Query 2222 TGTTACTTCAACATCA 2237
||||||||||||||||
Sbjct 1976 TGTTACTTCAACATCA 1991
Score = 324 bits (175), Expect = 4e-87
Identities = 280/330 (85%), Gaps = 10/330 (3%)
Strand=Plus/Plus
Query 1433 CTT-AACATCACGCGCCATGAAACATTTTGCAG---CTGCAAAGGTGAAAGAAGAGCCGA 1488
||| |||||||| ||||||| |||||| ||||| | ||||| ||| ||||||||||
Sbjct 1981 CTTCAACATCACACGCCATGGAACATTCTGCAGTTATTTTAAAGGAGAATGAAGAGCCGA 2040
Query 1489 TTCGCCTCCAAGATATTTCCTCAACACCAGATGTT-AAGGAAAATCCTGCAAATGCCTCC 1547
|| || |||||||||| || | |||||||||| || |||||| ||||||||||||||| |
Sbjct 2041 TTTGCTTCCAAGATATATCTTTAACACCAGAT-TTGAAGGAAGATCCTGCAAATGCCTTC 2099
Query 1548 TTGATGGAGGAGACTGAGCTTATTTGTCTCAGTGATGTTACTGCAACATCAGGCGCCATG 1607
|| |||||||||||| ||||||| || |||| ||| |||||| |||||||| ||||||||
Sbjct 2100 TTAATGGAGGAGACTAAGCTTATCTGCCTCAATGAAGTTACTTCAACATCAAGCGCCATG 2159
Query 1608 GAACATTCTGAAGTTATTCTAAAGGA-AAGAGAAGAACTGATTCACCTCCAAGATATTTC 1666
|||||||||| |||| || || |||| || || ||| ||| ||| || | ||||||| |
Sbjct 2160 GAACATTCTGCAGTTGTTATAGAGGATAA-AGCAGAGCTGGTTCGCCACGAAGATATAAC 2218
Query 1667 TGT-AACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTATTGGAGGAGACTGAGC 1725
| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2219 T-TCAACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTAATGGAGGAGACTGAGC 2277
Query 1726 TTATCTGTCTCAATGATGTTACTTCACCAT 1755
|||| || |||||||||| ||||||| |||
Sbjct 2278 TTATTTGCCTCAATGATGCTACTTCAACAT 2307
Score = 193 bits (104), Expect = 1e-47
Identities = 130/143 (91%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 1002 CCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGGGAAACCATCTACACCCAAGAAGAGT 1061
|||||||||||| || || || | || |||||||||| | ||||||||||||||| |||
Sbjct 873 CCCAAGATTGGTCTGCTTAGTAAAGTCCGAACCGGGAAGCAATCTACACCCAAGAAAAGT 932
Query 1062 GTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATTCATTCAGATACT 1121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GTCAGCTTCAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATTCATTCAGATACT 992
Query 1122 GAATCAGAAGCTGTATTCTCAGA 1144
|||||||||||| |||| |||||
Sbjct 993 GAATCAGAAGCTCTATTTTCAGA 1015
Score = 174 bits (94), Expect = 4e-42
Identities = 147/172 (85%), Gaps = 6/172 (3%)
Strand=Plus/Plus
Query 1433 CTT-AACATCACGCGCCATGAAACATTTTGCAGCTG-CA-A-AGG-TGAAAGAAGAGCCG 1487
||| ||||||| |||||||| |||||| ||||| || | | ||| | |||| ||||| |
Sbjct 2140 CTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAGGAT-AAAGCAGAGCTG 2198
Query 1488 ATTCGCCTCCAAGATATTTCCTCAACACCAGATGTTAAGGAAAATCCTGCAAATGCCTCC 1547
|||||| | ||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 2199 GTTCGCCACGAAGATATAACTTCAACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCC 2258
Query 1548 TTGATGGAGGAGACTGAGCTTATTTGTCTCAGTGATGTTACTGCAACATCAG 1599
|| ||||||||||||||||||||||| |||| ||||| |||| |||||||||
Sbjct 2259 TTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACTTCAACATCAG 2310
Score = 171 bits (92), Expect = 5e-41
Identities = 127/144 (88%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 801 CCCAAGATTGGTTTGCTTGGTAAAATAAGAACCG-GGAAGCAGTCTGCGCCCAAGAAAAG 859
||||||||||||||| ||||| | | ||||||| | || || ||| | |||||||| ||
Sbjct 1074 CCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGAGAAACCA-TCTACACCCAAGAAGAG 1132
Query 860 TGTCAGCTTCAATCATTTGCCTGATGTTGGGTACACTGAGCTAAAGATTCATTCAGATAC 919
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1133 TGTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATCCATTCAGATAC 1192
Query 920 TGAATCAGAGGCTGTGTTTTCAGA 943
||||||||| ||||| ||||||||
Sbjct 1193 TGAATCAGAAGCTGTATTTTCAGA 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152192234427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5