BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08810.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919629 jgi|Araly1|919629|scaffold_100910.1 1339 0.0
Ahg937505 jgi|Araly1|937505|scaffold_501696.1 292 3e-78
Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1 291 1e-77
Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053 134 2e-30
> Ahg919629 jgi|Araly1|919629|scaffold_100910.1
Length=934
Score = 1339 bits (725), Expect = 0.0
Identities = 812/853 (95%), Gaps = 9/853 (1%)
Strand=Plus/Plus
Query 54 gagagagagaaagaTGGGTAGGCCTCCATGCTGTGACAAGATAGGGATCAAGAAAGGACC 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GAGAGAGAGAAAGATGGGTAGGCCTCCATGCTGTGACAAGATAGGGATCAAGAAAGGACC 67
Query 114 ATGGACTCCTGAAGAAGATATCATTCTTGTTTCTTACATTCAAGAACATGGTCCTGGAAA 173
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 68 ATGGACTCCTGAAGAAGATATCATTCTTGTTTCTTACATCCAAGAACATGGTCCTGGAAA 127
Query 174 CTGGAGATCAGTTCCCACCAACACTGGGTTATTGAGATGCAGCAAAAGTTGTAGACTGAG 233
||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||| ||
Sbjct 128 CTGGAGATCTGTTCCCACCAATACTGGGCTACTGAGATGCAGCAAAAGTTGTAGACTCAG 187
Query 234 ATGGACAAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGAAGG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATGGACAAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGAAGG 247
Query 294 AATGATCATTCACTTGCAAGCCTTATTGGGTAACAAATGGGCGTCCATAGCTTCATACCT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 248 AATGATCATTCACTTGCAAGCCTTATTGGGTAACAAATGGGCGTCCATAGCTTCATATCT 307
Query 354 ACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTAAAGAAGAAGCT 413
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 308 ACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTGAAGAAGAAGCT 367
Query 414 CAACAAGTCTGACAGTGATGAGAGGAGCAGATCAGAGAACATTGCGCTGCAAACTTCTTC 473
||||||||| || ||||| ||||| |||||| |||||||||| | | |||||||||| |
Sbjct 368 CAACAAGTCCGAGAGTGACGAGAGAAGCAGAGCAGAGAACATGGTGTTGCAAACTTCCGC 427
Query 474 GACAAGAAACACCATTAATCATAGATCTACCTATGCTTCAAGCACCGAAAACATTTCCCG 533
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CACAAGAAACACCGTTAATCATAGATCTACCTATGCTTCAAGCACCGAAAACATTTCCCG 487
Query 534 CCTTCTTGAGGGTTGGATGAGAGCGTCTCCAAAGAGTAGTACAAGTACTACT--TT-CTT 590
|||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||
Sbjct 488 CCTTCTTGAGGGTTGGATGAGAGCATCTCCAAAGAGTAGTACAACTACTACTACTTTCTT 547
Query 591 GGAACACAAAATGCAGAACCGGACAAACAATTTCATCGATCATCACAGCGATCAGTTTCC 650
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 GGAACAGAAAATGCAGAACCGGACAAACAATTTCATCGATCATCACAATGATCAGTTTCC 607
Query 651 ATACGAGCAGCTTCAAGGTTCTTGGGAAGAGGGTCATAGCAAAGGAATCAACGGGGATGA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 608 ATACGAGCAGCTTCAAGGTTCTTGGGAAGAGGGTCATAGCAAAGGAATCAACGGGAATGG 667
Query 711 TGACCAGGGTATAAAGAATTCAGAGAATAACAACGGtgatgatgttcatcatgaagatgg 770
| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 T--C-AGGGTGTAAAGAATTCAGAGAATAACAACGGTGATGATGTTCATCATGAAGATGG 724
Query 771 tgatcatgaggatgatgatgatcatAATGCTACACCACCATTGACATTTATTGAGAAATG 830
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TGATGATGA---TGATGATCATCATAATGCTACACCACCATTGACATTTATTGAGAAATG 781
Query 831 GCTTTTGGAGGAAACAAGTACTACTGGGGGTCAAATGGAAGAGATGAGCCACTTGATGGA 890
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 782 GCTTTTGGAGGAAACAAGTACTGCTGGGGGCCAAATGGAAGAGATGAGCCACTTGATGGA 841
Query 891 GCTCTCTAATATG 903
|||||||||||||
Sbjct 842 GCTCTCTAATATG 854
Score = 139 bits (75), Expect = 4e-32
Identities = 79/81 (98%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1038 GATATAAGTAGCTAAAATGCTCACTGCATAAGTTGTAACTAATCTAAAGTTGTCTACCCA 1097
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 854 GATATAAGTAGCTAAAATGCTCACTGCATAAGTTGTAACTAATCTAAACATGTCTACCCA 913
Query 1098 TTTACATGAATAAAATCCAAT 1118
|||||||||||||||||||||
Sbjct 914 TTTACATGAATAAAATCCAAT 934
> Ahg937505 jgi|Araly1|937505|scaffold_501696.1
Length=1043
Score = 292 bits (158), Expect = 3e-78
Identities = 302/368 (82%), Gaps = 24/368 (7%)
Strand=Plus/Plus
Query 65 agaTGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCT 123
||||||| || || ||||||||||||||||| ||| | |||||||| |||||||| ||
Sbjct 21 AGATGGGAAGACCACCATGCTGTGACAAGAT-TGGAGTGAAGAAAGGGCCATGGACACCA 79
Query 124 GAAGAAGATATCATTCTT-GTTTCTTACATTCAAGAACATGGTCCTGGAAACTGGAGATC 182
|| |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 80 GAGGAAGATATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATC 138
Query 183 AGTTCCCAC-CA-ACACTGGGTT-ATTGAGATGCAGCAAAAGTTGTAGACTGAGATGGAC 239
|| || || || ||| || || | |||||| ||||||||||||||| |||| |||||
Sbjct 139 TGTGCCTACTCATACA--GGTTTGAG-GAGATGTAGCAAAAGTTGTAGATTGAGGTGGAC 195
Query 240 AAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCT--CATGAAGA-AGGAAT 296
|||||||| ||||||| ||||| |||||||| ||| | || |||||||| | || |
Sbjct 196 TAATTATCTTCGACCTGGGATTAAGCGTGGAAA-TTT-CACCGAGCATGAAGAGAAGA-T 252
Query 297 GAT-CATTCA-CTTGCAAGC-CTTATTGGGTAACAAATGGGC-GTCCATAGCTTCATACC 352
||| | | || ||| ||||| ||| ||||| |||| ||||| | | ||||| |||||||
Sbjct 253 GATTC-TCCATCTT-CAAGCTCTT-TTGGGCAACAGGTGGGCAG-CTATAGCATCATACC 308
Query 353 TACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTAAAGAAGAAGC 412
| ||| |||| || ||||||||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 309 TTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAAAAGC 368
Query 413 TCAACAAG 420
|||| |||
Sbjct 369 TCAAGAAG 376
> Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1
Length=1221
Score = 291 bits (157), Expect = 1e-77
Identities = 296/361 (82%), Gaps = 17/361 (5%)
Strand=Plus/Plus
Query 67 ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCTGA 125
||||| || || || |||||||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGAT-TGGAGTGAAGAAAGGACCATGGACACCAGA 59
Query 126 AGAAGATATCATTCTT-GTTTCTTACATTCAAGAACATGGTCCTGGAAACTGGAGATCAG 184
||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 60 GGAAGACATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 118
Query 185 TTCCCACC-AACACTGGGTTATTGAGATGCAGCAAAAGTTGTAGACTGAGATGGACAAAT 243
| |||| | ||||| || || | |||||| ||||| || || ||| |||||||||| |||
Sbjct 119 T-CCCAACTAACACAGG-TT-T-GAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAAT 174
Query 244 TATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGA-AGGAATGATCAT 302
||||| |||| || ||||| |||||||| |||||| |||||||| | || | || |
Sbjct 175 TATCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACT-ATTGT 233
Query 303 TCA-CTTGCAAGCC-TTATTGGGTAACAAATGGGC-GTCCATAGCTTCATACCTACCACA 359
||| ||| |||||| || || || |||| |||||| | ||||||| |||||||| ||| |
Sbjct 234 TCATCTT-CAAGCCCTT-TTAGGCAACAGATGGGCAG-CCATAGCATCATACCTTCCAGA 290
Query 360 AAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTAAAGAAGAAGCTCAACAA 419
||| || ||||||||||| |||||||| |||||||| || || |||||||||||||| ||
Sbjct 291 AAGGACAGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAGAA 350
Query 420 G 420
|
Sbjct 351 G 351
> Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053
Length=486
Score = 134 bits (72), Expect = 2e-30
Identities = 122/145 (84%), Gaps = 7/145 (5%)
Strand=Plus/Plus
Query 67 ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCTGA 125
||||| || || || |||||||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGAT-TGGAGTGAAGAAAGGACCATGGACACCAGA 59
Query 126 AGAAGATATCATTCTT-GTTTCTTACATTCAAGAACATGGTCCTGGAAACTGGAGATCAG 184
||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 60 GGAAGACATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 118
Query 185 TTCCCACC-AACACTGGG-TTATTG 207
| |||| | ||||| | | ||||||
Sbjct 119 T-CCCAACTAACACAGTGCTTATTG 142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5