BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08830.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919631 jgi|Araly1|919631|scaffold_100912.1 1035 0.0
> Ahg919631 jgi|Araly1|919631|scaffold_100912.1
Length=675
Score = 1035 bits (560), Expect = 0.0
Identities = 636/672 (95%), Gaps = 7/672 (1%)
Strand=Plus/Plus
Query 133 TCAC-AAAGGCCAAGTAACAATGGCGAAAGGAGTTGCAGTTTTGAACAGCAGTGAGGGTG 191
|||| ||| ||||| |||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1 TCACAAAAAGCCAACAAACAATGGCGAAAGGAGTGGCCGTTTTGAACAGCAGCGAGGGTG 60
Query 192 TTACGGGGACTATCTTT-TTCACCCAGGAAGGCGATGGTGTGACCACTGTGAGTGGAACA 250
||| ||||||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 61 TTAAGGGGACTAT-TTTCTTCACCCAAGAAGGAGATGGTGTGACCACTGTGACTGGAACA 119
Query 251 GTTTCTGGCCTTAAGCCTGGTCTTCATGGTTTCCATGTCCATGCTCTTGGTGACACCACT 310
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTTCTGGTCTTAAGCCTGGTCTTCATGGTTTCCATGTCCATGCTCTTGGTGACACCACT 179
Query 311 AACGGTTGCATGTCTACTGGTCCACATTTCAACCCCGATGGTAAAACACACGGTGCCCCT 370
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 AACGGTTGCATGTCTACTGGTCCACATTTCAACCCTGATGGTAAAACACACGGTGCCCCT 239
Query 371 GAGGATGCTAATCGACATGCTGGTGATCTAGGAAACATCACTGTTGGAGATGATGGAACT 430
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 GAGGATGCTAATCGACATGCTGGTGATCTAGGAAACATCACTGTTGGAGACGATGGAACT 299
Query 431 GCCACCTTCACAATCACTGATTGCCAGATTCCTCTTACTGGACCAAACTCTATTGTTGGT 490
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GCCACCTTCACAATCACTGACACCCAGATTCCTCTTACTGGACCAAACTCTATTGTTGGA 359
Query 491 AGGGCTGTTGTTGTCCATGCAGACCCTGATGACCTCGGAAAGGGAGGCCATGAACTCAGC 550
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AGGGCTGTTGTTGTCCACGCAGACCCTGATGATCTCGGAAAGGGAGGCCATGAACTCAGC 419
Query 551 CTGGCTACTGGAAACGCAGGCGGCCGTGTTGCTTGCGGCATCATTGGTCTCCAGGGCTAA 610
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTGGCTACCGGAAACGCAGGCGGCCGTGTTGCTTGCGGCATCATTGGTCTCCAGGGCTAA 479
Query 611 AGCTGCTACGTTTCCAAAGAAGAGATTGATGTAATAAGGAGGTCCAACCTTAGACCTGGG 670
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 AGCTGCTACGTTTCCAAAGAAGAGATTGCTGTAATAAGGAGGTCCAACCTTAGACCTGGG 539
Query 671 TTTGGTAGTT-GTGTGTATCTTCTGGTGTGTGGCTAAAAACCTA-TGAGCTTAGTGTGGC 728
|| ||||||| ||||||||||| |||||||| ||||||| || | |||||||||||||||
Sbjct 540 TTGGGTAGTTTGTGTGTATCTTTTGGTGTGTTGCTAAAA-CC-ACTGAGCTTAGTGTGGC 597
Query 729 TCAAAGCATTTTTAATTCAGACAGAAAACAGAGAAAATTCCGTACTTTTATTATTTCATG 788
|||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 598 TCAATGCATTTTTAGTTCAGACAGAAAACAGAGAAAATTCCGTACTTCTATCATTTTATG 657
Query 789 AATAAAAAAGAG 800
||||||||||||
Sbjct 658 AATAAAAAAGAG 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5