BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08845.2
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470958 jgi|Araly1|470958|fgenesh2_kg.1__912__AT1G08845.1 985 0.0
> Ahg470958 jgi|Araly1|470958|fgenesh2_kg.1__912__AT1G08845.1
Length=647
Score = 985 bits (533), Expect = 0.0
Identities = 578/600 (96%), Gaps = 1/600 (0%)
Strand=Plus/Plus
Query 107 CCATCGATTTCCAGGT-GGTTGCAGATATAATGTTGAAGCAAGTGGTTGCCAAGTATTCT 165
||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 20 CCATCGATTGCCAGGTGGGTTTCAGATATAATGTTGAAGCAAGTGGTTGCCAAGTATTCC 79
Query 166 ATAGGTAAAGCGGCGATTTATGGAAGTAACAGAGAAAAGCTTAGACCTTTCATGTGCCAA 225
|||||||||||||| || |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 80 ATAGGTAAAGCGGCCATCTATGGAAGTAACAGAGAAAATCTTAGACCTTTCCTGTGCCAA 139
Query 226 ACCAGTTGTCGATTCCACAATGGACGGACTGTTTTTGCACCAAGAAGCTTCTTTGGTGTA 285
|||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 140 ACCACTTGTCGGTTCCACAATGCACGGACTGTTTTTGCACCAAGAAGCTTCTTTGGTGTA 199
Query 286 GAAGACTACGTGGATGACGACACAAGCCGGCCATACACATACCAAAAAGAGAAAAAGTCG 345
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 200 GAAGACTACGTGGATGATGACACAAGCCGGCCTTACACATACCAAAAAGAGAAAAAGTCG 259
Query 346 AAGAATCCAGACAAGCATGTGTCGTTCAAGCAACGAACAGTTGCATACATGGAGCCGTTC 405
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 260 AAGAATCCAGACAAGCATGTGTCGTTCAAGCAACGAACAGTCGCATACATGGAGCCATTC 319
Query 406 ACTCTAGATGTCTTCATCTCAAAGCGCTTTGTTTCGGCATCTCTCACGCACCGTGTTACA 465
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 320 ACTCTAGATGTCTTCATCTCAAAGCGCTTTGTTTCGGCATCTCTCACTCACCGTGTCACA 379
Query 466 TGTAGGCAAGTTGCTGTTGCGGGAACAAACTCTAAAGACGTAAAAGCTGTTCTGAGGTCA 525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 380 TGTAGGCAAGTTGCTGTTGCGGGAACAAACTCTAAAGACGTCAAAGCTGTTCTGAGGTCA 439
Query 526 AGATGTGATATCCCGGCATGTATGTCCATAGGGAGGATCTTGTCTGAGCGTGCAAAAGAA 585
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 440 AGATGTGATATCCCGGCATGTATGTCCATAGGGAGGATCTTGTCGGAGCGTGCAAAAGAA 499
Query 586 GCTGATGTGTACACGGCTTCTTATACGCCAAGGGACCAAGACAAGTTTGAAGGGAAAATC 645
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 500 GCTGATGTTTACACGGCTTCTTATACGCCAAGGGACCAAGACAAGTTTGAAGGGAAGATC 559
Query 646 AGAGCTGTTGTCCAGTCCCTTATTGATAACGGAATTGATGTTAAAATTTATCTCGATTAG 705
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 AGAGCCGTTGTCCAGTCCCTTATTGATAACGGAATTGATGTTAAAATTTATCTCGATTAG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5