BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08845.2 Length=705 Score E Sequences producing significant alignments: (Bits) Value Ahg470958 jgi|Araly1|470958|fgenesh2_kg.1__912__AT1G08845.1 985 0.0 > Ahg470958 jgi|Araly1|470958|fgenesh2_kg.1__912__AT1G08845.1 Length=647 Score = 985 bits (533), Expect = 0.0 Identities = 578/600 (96%), Gaps = 1/600 (0%) Strand=Plus/Plus Query 107 CCATCGATTTCCAGGT-GGTTGCAGATATAATGTTGAAGCAAGTGGTTGCCAAGTATTCT 165 ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 20 CCATCGATTGCCAGGTGGGTTTCAGATATAATGTTGAAGCAAGTGGTTGCCAAGTATTCC 79 Query 166 ATAGGTAAAGCGGCGATTTATGGAAGTAACAGAGAAAAGCTTAGACCTTTCATGTGCCAA 225 |||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||| Sbjct 80 ATAGGTAAAGCGGCCATCTATGGAAGTAACAGAGAAAATCTTAGACCTTTCCTGTGCCAA 139 Query 226 ACCAGTTGTCGATTCCACAATGGACGGACTGTTTTTGCACCAAGAAGCTTCTTTGGTGTA 285 |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 140 ACCACTTGTCGGTTCCACAATGCACGGACTGTTTTTGCACCAAGAAGCTTCTTTGGTGTA 199 Query 286 GAAGACTACGTGGATGACGACACAAGCCGGCCATACACATACCAAAAAGAGAAAAAGTCG 345 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 200 GAAGACTACGTGGATGATGACACAAGCCGGCCTTACACATACCAAAAAGAGAAAAAGTCG 259 Query 346 AAGAATCCAGACAAGCATGTGTCGTTCAAGCAACGAACAGTTGCATACATGGAGCCGTTC 405 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 260 AAGAATCCAGACAAGCATGTGTCGTTCAAGCAACGAACAGTCGCATACATGGAGCCATTC 319 Query 406 ACTCTAGATGTCTTCATCTCAAAGCGCTTTGTTTCGGCATCTCTCACGCACCGTGTTACA 465 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 320 ACTCTAGATGTCTTCATCTCAAAGCGCTTTGTTTCGGCATCTCTCACTCACCGTGTCACA 379 Query 466 TGTAGGCAAGTTGCTGTTGCGGGAACAAACTCTAAAGACGTAAAAGCTGTTCTGAGGTCA 525 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 380 TGTAGGCAAGTTGCTGTTGCGGGAACAAACTCTAAAGACGTCAAAGCTGTTCTGAGGTCA 439 Query 526 AGATGTGATATCCCGGCATGTATGTCCATAGGGAGGATCTTGTCTGAGCGTGCAAAAGAA 585 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 440 AGATGTGATATCCCGGCATGTATGTCCATAGGGAGGATCTTGTCGGAGCGTGCAAAAGAA 499 Query 586 GCTGATGTGTACACGGCTTCTTATACGCCAAGGGACCAAGACAAGTTTGAAGGGAAAATC 645 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 500 GCTGATGTTTACACGGCTTCTTATACGCCAAGGGACCAAGACAAGTTTGAAGGGAAGATC 559 Query 646 AGAGCTGTTGTCCAGTCCCTTATTGATAACGGAATTGATGTTAAAATTTATCTCGATTAG 705 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 560 AGAGCCGTTGTCCAGTCCCTTATTGATAACGGAATTGATGTTAAAATTTATCTCGATTAG 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25923583560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5