BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08860.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470959 jgi|Araly1|470959|fgenesh2_kg.1__913__AT1G08860.1 2843 0.0
> Ahg470959 jgi|Araly1|470959|fgenesh2_kg.1__913__AT1G08860.1
Length=1749
Score = 2843 bits (1539), Expect = 0.0
Identities = 1684/1755 (96%), Gaps = 6/1755 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGGTTGTTTATCTGGAGATGTGAAAGGAGGCAAACAAGCCATTGGAGGGGTCCAG 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGGTTGTTTATCTGGAGATGTGCAAGGAGGCAAACAAGCCATTGGAGGGGTCCAT 60
Query 61 CAGAGACCCACTTCCTCAACCATCGCCAACAATGCGGCTCACAACGACGCCGTCGATTTT 120
|||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 61 CAGAGACCCACTTCCTCATCCATCGCCAACAATGCGGCGCACAACGACGCTGTCGATTTT 120
Query 121 TTCTTCAGATCTCGTGGTCAATATCCTCTCTTTTCTCAAATCGAGTTAACTTTGTCGGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTCAGATCTCGTGGTCAATATCCTCTCTTTTCTCAAATCGAGTTAACTTTGTCGGCT 180
Query 181 TCAAACTTGTTGGACTGTGACATAACGTCTAAGAGTGATCCGATGGCTGTCATGTATTTG 240
| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 181 TTAAACTTGTTGGACTGTGACATAACATCTAAGAGTGATCCGGTGGCTGTCATGTATTTG 240
Query 241 AGGAAAAAGGATGGGAGACTTGAGGAAATTGGCCGTACTGAAGTCATACTTAACAACTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGGAAAAAGGATGGGAGACTTGAGGAAATTGGCCGTACTGAAGTCATACTTAACAGCTTG 300
Query 301 AATCCTAAGTGGATTGAGAAGATAACAGTCTCTTTTCAGTTTGAAGCTGTCCAGACATTA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATCCAAAGTGGATTGAGAAGATAACAGTCTCTTTTCAGTTTGAAGCTGTCCAGACATTA 360
Query 361 GTTTTTCACGTGTATGATGTTGATACCAGATATCATAATGTGCCAGTGAAGACATTAAAG 420
||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 361 GTTTTCCACGTGTATGATGTCGATACAAGATATCACAATGTGCCAGTGAAGACATTAAAG 420
Query 421 CTAAAGGATCAGGATTTCTTGGGAGAAGGCACATGTGTTCTGTCCGAGATTATGACAAGA 480
|| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 CTGAAGGACCAGGATTTCTTGGGAGAAGCCACATGTGTTCTGTCCGAGATTATGACAAGA 480
Query 481 CAAAACCGGACACTGACATTAACTCTTACTGGCAACGTTAGAGCTGGTGTGAATAGAAAT 540
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTAACCGGACAGTGACATTAACTCTTACTGGCAACGTTAGAGCTGGTGTGAATAGAAAT 540
Query 541 TTGGGAACACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATT 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGGGAACACTCTCTGTCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATT 600
Query 601 AATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTGATCCTTTCTTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTGATCCTTTCTTA 660
Query 661 AGAATATCAAGAGTTGTTGAGACAAGTGCTGCAGTCCCAATTTGTCGGACTGAGGTCGTG 720
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 AGAATTTCAAGAATTGTTGAGACAAGTGCTGCAGTCCCAATTTGTCGGACTGAGGTAGTG 720
Query 721 GACAACAACCTCAACCCCATGTGGAGGCCTGTGTGCTTGACTATGCAACAATTTGGAAGC 780
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GACAACAACCTCAATCCCATGTGGAGGCCTGTGTGCTTGACTATGCAGCAATTTGGAAGC 780
Query 781 AAAGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTT 840
||||||||||||||||||||||||||||| ||||| || || |||||||||||||| |||
Sbjct 781 AAAGACACCCCATTGGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGAGCTT 840
Query 841 ATTGGAAAGACAGAGAAATCTGTAGCAGAATTGGAGAGACTTTGTCTCCAGAAAGAGGCT 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 ATTGGAAAGACAGAGAAATCTGTAGCAGAATTGGAGAGACTCTGTCTCCAGAAAGAGGCT 900
Query 901 GCAAACTTTGTCTATCCATCTCTAAGTCACGGTAGAAACAAGGTTCTGAAAGGCCAGCTC 960
||||||||||||||||||||||| || || | ||||||||||||||||||||||||
Sbjct 901 GCAAACTTTGTCTATCCATCTCTTAG----GG--GCAACAAGGTTCTGAAAGGCCAGCTC 954
Query 961 ATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCCAGTGGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 955 ATTGTGGATCGTTATGTGGAGAAAGTCCAGTACAGTTTTCTTGATTACATATCAAGTGGC 1014
Query 1021 TTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGCTTCAAATGGCGATCCCCGAACT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TTTGAACTTAATTTCATGGTTGCAGTTGACTTCACTGCTTCAAATGGCGATCCCCGAACT 1074
Query 1081 CCAAGTTCTTTGCACTACATTGATCCATCAGGCAGATTAAACTCATATCAACAGGCTATT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 CCAAGTTCTTTGCACTACATTGATCCATCAGGCAGATTAAACTCATATCAGCAGGCTATC 1134
Query 1141 ATGGAAGTAGGAGAGGTCATCCAGTTTTATGATTCTGATAAGCGGTTTCCTGCCTGGGGG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATGGAAGTAGGAGAGGTCATCCAGTTTTATGATTCTGATAAGCGGTTTCCTGCCTGGGGT 1194
Query 1201 TTTGGAGGAAGAACATCGGATGGTTCTGTGTCCCATGCTTTTAACTTGAATGGAGCATCA 1260
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1195 TTTGGAGGAAGAACATCGGATGGTTCTGTGTCCCATGCTTTCAACTTGAATGGAGCTTCA 1254
Query 1261 TATGGCGACGAGGTTGTTGGAGTTGAAGGAATCATGGTAGCTTATGCGAGTGCTCTTCGC 1320
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 1255 TATGGCGACGAGGTTGTTGGTGTTGAAGGAATCATGGCAGCTTATGCAAGTGCTCTTCGC 1314
Query 1321 AATGTTTCTCTAGCAGGACCAACTCTATTTAGCAATGTGGTCGACAAGGCTGCTCATACT 1380
|||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 1315 AATGTTGCTCTAGCAGGACCAACCCTATTCAGCCATGTGGTCGACAAGGCTGCTCATACT 1374
Query 1381 GCTTCACAGTCACTCTCACAAAACAGTCCCAAGTACTTTGTTCTGCTCATCATTACGGAT 1440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GCTTCACAGTCGCTCTCACAAAACAGTCCCAAGTACTTTGTTCTGCTCATCATTACGGAT 1434
Query 1441 GGAGTCCTTACAGACATGGCGGGTACAGTAGATGCATTAGTGAGAGCTTCTGATCTCCCG 1500
||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1435 GGAGTCCTTACGGACATGGCGGGTACAATAGACGCATTGGTGAGAGCTTCTGATCTCCCG 1494
Query 1501 TTGTCAGTTCTTATCGTCGGTGTGGGAAACACAGACTTCAAACAAATGGAGATGCTTGAT 1560
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTGTCAGTTCTCATCGTCGGTGTGGGAAACACAGACTTCAAACAAATGGAGATGCTTGAT 1554
Query 1561 GCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTT 1620
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1555 GCTGATAATGGTCGCCGGTTAGAGAGTTCTACTGGTCGGATAGCTACACGGGACATCGTT 1614
Query 1621 CAATTTGTCCCTATGAAAGACATCCATAGTGGACTAGTGTCGGTGGTGCAGGCACTTCTA 1680
|| || || ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1615 CAGTTCGTTCCTATGAAAGACATCCATAGTGGACAAGTGTCGGTGGTCCAGGCACTTCTA 1674
Query 1681 GAAGAACTTCCCGGCCAGTTTCTGACCTATGTCCGTTCGAGAAAGATTAATCCGATCGGA 1740
|||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 1675 GAAGAACTTCCCGGGCAGTTTCTGAGCTATGTCCGTTCCAGAAAGATTAATCCGGTCGGA 1734
Query 1741 GCTCCAGCAATTTGA 1755
|||||||| ||||||
Sbjct 1735 GCTCCAGCGATTTGA 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5