BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08880.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919635 jgi|Araly1|919635|scaffold_100916.1 728 0.0
> Ahg919635 jgi|Araly1|919635|scaffold_100916.1
Length=470
Score = 728 bits (394), Expect = 0.0
Identities = 437/458 (95%), Gaps = 1/458 (0%)
Strand=Plus/Plus
Query 103 GTTCTAAATTTCGAAGAAGACGATGAGTACAGGCGCAGGAAGCGGAACAACCAAAGGTGG 162
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTCT-AGTTTCGAAGAAGACGATGAGTACAGGCGCAGGAAGCGGAACAACCAAAGGTGG 59
Query 163 CAGAGGAAAGCCAAAGGCCACCAAATCCGTCTCTCGATCATCTAAAGCCGGTCTTCAATT 222
|||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 60 CAGAGGGAAGCCAAAGGCCACCAAATCCGTCTCTCGTTCGTCCAAAGCCGGTCTTCAATT 119
Query 223 CCCCGTCGGAAGAATCGCTAGATTCCTCAAATCCGGTAAATACGCCGAGCGTGTCGGTGC 282
||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 CCCAGTCGGAAGAATCGCCAGATTCCTCAAAGCCGGTAAATACGCCGAGCGTGTCGGTGC 179
Query 283 CGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGGTGTTGGAGCT 342
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 CGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCTGAGGTGTTGGAGCT 239
Query 343 GGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATAGTACCAAGACACATTCAGCT 402
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 240 TGCGGGAAACGCAGCAAGGGATAACAAGAAGACGCGTATAGTACCAAGACATATTCAGCT 299
Query 403 TGCAGTGAGGAACGATGAAGAGTTAAGCAAACTTCTGGGAAGTGTGACGATTGCGAATGG 462
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 300 TGCAGTGAGGAACGATGAAGAGCTGAGTAAACTTCTGGGAAGTGTGACGATTGCGAATGG 359
Query 463 AGGAGTTTTGCCAAATATTCATCAGACTCTTTTGCCATCCAAGGTTGGCAAGAACAAAGG 522
||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 AGGTGTTTTGCCTAATATACATCAGACTCTTTTGCCTTCCAAGGTTGGCAAGAACAAAGG 419
Query 523 AGATATTGGATCTGCTTCTCAGGAGTTCTGAGGTTCTT 560
|||||||||||||||||||||||||||||||| |||||
Sbjct 420 AGATATTGGATCTGCTTCTCAGGAGTTCTGAGTTTCTT 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5