BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08900.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470964 jgi|Araly1|470964|fgenesh2_kg.1__918__AT1G08900.2 2084 0.0
Ahg470961 jgi|Araly1|470961|fgenesh2_kg.1__915__AT1G08890.1 1616 0.0
Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1 56.5 6e-07
> Ahg470964 jgi|Araly1|470964|fgenesh2_kg.1__918__AT1G08900.2
Length=1377
Score = 2084 bits (1128), Expect = 0.0
Identities = 1304/1389 (94%), Gaps = 12/1389 (1%)
Strand=Plus/Plus
Query 25 ATGGAATCTGAAAGACTCGAATCACATCTTCTGAATAAGCAAGAAGAAGAAGCTTCTTCC 84
|||||||||||||| | ||||| | ||| |||||||||| |||||||||||||||||
Sbjct 1 ATGGAATCTGAAAGTTTTGAATCTCCTCTGCTGAATAAGC---AAGAAGAAGCTTCTTCC 57
Query 85 TTCACTTCTGGTCTTCTTCTCAGCACATCCGTCGTTGTCGCTGGATCCTTCTGTTATGGC 144
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 58 TTCACTTCTGGTCTTATTCTCAGCACATCCGTCGTTGTCGCTGGATCATTCTCTTATGGC 117
Query 145 TGCGCCATGTCATATTCGTCGCCTGCTCAGTCCAAAATCATGGAAGAACTGGGACTTTCC 204
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
Sbjct 118 TGCGCCATGTCATATTCGTCGCCTGCTCAATCAAAAATTATGGAAGAACTGGGACTTT-C 176
Query 205 GTTGCAGATTATTCGTTTTTCACTTCGGTAATGACATTAGGAGGAATGATTACCGCCGTG 264
| || |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 177 --T-----TT-TTCGTTTTTCACTTCGGTAATGACATTAGGAGGAATGATTACGGCCGCG 228
Query 265 TTCAGCGGTAAAATCTCTGCTCTCGTTGGTCGTCGACAGACAATGTGGATCTCAGATGTT 324
|| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 229 TTTAGCGGGAAAATATCTGCTATCGTTGGTCGTCGACAGACAATGTGGATCTCAGATGTT 288
Query 325 TGCTGTATTTTTGGTTGGCTCGCTGTAGCGTTTGCACATGATATTATAATGCTTAATACT 384
||||| ||||||||||||||||||||||| | ||||||||||||| || ||||||||| |
Sbjct 289 TGCTGCATTTTTGGTTGGCTCGCTGTAGCATATGCACATGATATTCTACTGCTTAATATT 348
Query 385 GGACGACTCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGGTTCCTGTGTATATA 444
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 349 GGACGACTCTTCTTGGGGTTCGGGGTCGGTCTCATTAGTTATGTGGTTCCTGTGTATATA 408
Query 445 GCAGAAATTACACCCAAAACATTTCGTGGAGGATTTTCTTATTCCAATCAGCTTCTACAA 504
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 409 GCAGAAATTACACCCAAAACATTTCGCGGAGGATTTTCTTATTCCAATCAGCTTCTACAA 468
Query 505 TGTCTTGGGATTTCACTCATGTTCTTCACCGGAAACTTTTTCCATTGGCGAACATTAGCT 564
||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 469 TGTCTTGGGATTTCACTCATGTTTTTCATTGGAATTTTTTTCCATTGGCGAACATTAGCT 528
Query 565 CTTTTAAGTGCAATCCCAAGTGCTTTCCAAGTGATATGTTTATTTTTTATTCCTGAATCT 624
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 529 CTTTTAAGTGCAATCCCAAGTGCTTCCCAAGTGATATGTTTATTTTTTATTCCTGAATCT 588
Query 625 CCTAGATGGCTGGCGATGTATGGTCAAGATCAAGAGCTTGAAGTTTCGTTGAAAAAACTA 684
||||||||| ||||||||||||||| ||||||||| ||||||||| | ||||| | | ||
Sbjct 589 CCTAGATGGTTGGCGATGTATGGTCGAGATCAAGAACTTGAAGTTACTTTGAAGAGATTA 648
Query 685 AGGGGAGAAAATAGTGATATTCTAAAGGAAGCTGCTGAAATCAGAGAAACAGTGGAAATA 744
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 649 AGGGGAGAAAATAGTGATATTCTTGAGGAAGCAGCTGAAATCAGAGAAACAGTGGAAATA 708
Query 745 TCCAGAAAAGAGTCTCAAAGTGGAATAAGAGACTTGTTCCATATCGGAAACGCACATTCG 804
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 709 TCCAGAAAAGAGTCTCGAAGTGGAATAAGAGACTTGTTCCATATAGGAAACGCACATTCG 768
Query 805 TTAATCATTGGATTGGGTTTAATGCTCTTGCAACAATTTTGTGGGAGTGCGGCGATAAGT 864
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 769 TTAATCATTGGCTTGGGATTAATGCTTTTGCAACAATTTTGTGGGAGTGCGGCGATAAGT 828
Query 865 GCTTATGCTGCTCGAATTTTCGACAAAGCCGGTTTTCCAAGCGACATAGGAACAACCATC 924
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 829 GCTTATGCTGCTCGTATTTTCGACAAAGCAGGTTTTCCAAGCGACATAGGAACAACCACC 888
Query 925 CTCGCAGTGATTCTGATACCGCAATCTATAGTTGTCATGTTAACCGTTGACCGATGGGGA 984
|||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 889 CTCGCAGTTATTCTGATACCGCAATCTATAGTTGTCATGTTAACTGTCGACCGCTGGGGA 948
Query 985 CGCCGACCACTTCTTATGATTTCTTCTATCGGAATGTGCATATGCTCATTTTTTATTGGC 1044
||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 949 CGCAGACCACTTCTTATGATTTCTTCTATCGGTATGTGCATATGCTCATTTTTAATTGGC 1008
Query 1045 CTTTCATACTACCTTCAGAAGAATGGTGAATTTCAGAAGTTATGTTCCGTTATGTTAATC 1104
||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1009 CTTTCTTACTATCTTCAGAAGCATGGTGAATTTCAGAAGTTTTGTTCCGTTATGTTAATC 1068
Query 1105 GTCGGTTTAGTGGGTTATGTCTCATCCTTTGGCATTGGCCTAGGTGGATTACCATGGGTT 1164
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 1069 GTCGGTTTAGTGGGTTATGTCTCATCTTTTGGCATTGGTCTAGGTGGACTACCATGGGTT 1128
Query 1165 ATAATGTCTGAGATATTTCCGGTGAATGTGAAAATCACCGCCGGTAGCCTTGTAACGATG 1224
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ATCATGTCTGAGGTATTTCCGGTGAATGTGAAAATCACCGCCGGTAGCCTTGTAACGATG 1188
Query 1225 TCAAATTGGTTTTTTAATTGGATTATCATCTATAGTTTTAATTTCATGATACAGTGGAGC 1284
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1189 TCAAATTGGTTTTTTAATTGGATCATCATTTATAGTTTCAATTTCATGATACAGTGGAGC 1248
Query 1285 GCTTCCGGAACATATTTCATATTTTCTGGAGTTTCTCTGGTGACGATCGTATTCATATGG 1344
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1249 GCTTCCGGAACATATTTCATATTTTCTGGAGTTTCTTTGGTGACGATCGTATTCATATGG 1308
Query 1345 ACATTGGTGCCTGAGACGAAAGGCCGAACACTCGAAGAGATTCAAACATCATTAGTCCGA 1404
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1309 ACATTGGTGCCTGAGACGAAAGGCCGAACACTCGAAGAGATTCAAGCATCATTAGTCCGA 1368
Query 1405 CTTTCGTAA 1413
|||||||||
Sbjct 1369 CTTTCGTAA 1377
> Ahg470961 jgi|Araly1|470961|fgenesh2_kg.1__915__AT1G08890.1
Length=1529
Score = 1616 bits (875), Expect = 0.0
Identities = 1244/1420 (88%), Gaps = 33/1420 (2%)
Strand=Plus/Plus
Query 23 AGATGGAATCTGAAAG-ACTCGAATCACATCTTCTGAATAA-G--CAAGAAGAAG-AAG- 76
|||||||||||| ||| | || || ||| ||| ||||||| | |||||||||| |||
Sbjct 1 AGATGGAATCTGGAAGTA-TCAAAACACCTCTGGTGAATAATGATCAAGAAGAAGCAAGA 59
Query 77 ----CTTCTTCCTTCACTTCTGGTCTTCTTCTCAGCACATCCGTCGTTGTCGCTGGATCC 132
|||||||| |||||||||||||||||||||| || ||||||| | || ||||||||
Sbjct 60 ACCTCTTCTTCCATCACTTCTGGTCTTCTTCTCAGTACCTCCGTCGCTATCACTGGATCC 119
Query 133 TTCTG-TTATGGCTGCGCCATGTCATATTCGTCGCCTGCTCAGTCCAAAATCATGGAAGA 191
||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TTC-GTTTATGGCTGCGCTATGTCATATTCGTCGCCTGCTCAATCCAAAATCATGGAAGA 178
Query 192 ACTGGGACTTTCCGTTGCAGATTATTCGTTTTTCACTTCGGTAATGACATTAGGAGGAAT 251
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 179 ACTGGGACTTTCCGTGGCAGATTATTCGTTTTTCACATCGGTCATGACATTAGGAGGAAT 238
Query 252 GATTACCGCCGTG-TTCAGCGGTAAAATCTCTGCTCTCGTTGGTCGTCGACAGACAATGT 310
||| || |||| | || || || |||||| |||| | |||||||||||||||||||||
Sbjct 239 GATAACAGCCGCGCTT-AGTGGAAAAATCGCTGCAATTATTGGTCGTCGACAGACAATGT 297
Query 311 GGATCTCAGATGTTTGCTGTATTTTTGGTTGGCTCGCTGTAGCGTTTGCACATGATATTA 370
||||||| ||||||| ||| || || |||||||| |||||||| ||||||||||||| |
Sbjct 298 GGATCTCGGATGTTTTCTGCATCTTCGGTTGGCTTGCTGTAGCCTTTGCACATGATAAAA 357
Query 371 TAATGCTTAATACTGGACGACTCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGG 430
| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGCTGCTAAATATTGGACGAGGCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGG 417
Query 431 TTCCTGTGTATATAGCAGAAATTACACCCAAAACATTTCGTGGAGGATTTTCTTATTCCA 490
| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 418 TACCTGTGTATATAGCAGAAATTACACCTAAAGCATTTCGTGGAGGATTTTCTTTTTCCA 477
Query 491 ATCAGCTTCTACAATGTCTTGGGATTTCACTCATGTTCTTCACCGGAAACTTTTTCCATT 550
|||| ||||||||| || |||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 478 ATCAACTTCTACAAAGTTTTGGAATTTCGCTCATGTTCTTCACCGGAAACTTTTTTCATT 537
Query 551 GGCGAACATTAGCTCTTTTAAGTGCAATCCCAAGTGCTTTCCAAGTGATATGTTTATTTT 610
|| ||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 538 GGAGAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTGTCCAAATGATATGTTTATTTT 597
Query 611 TTATTCCTGAATCTCCTAGATGGCTGGCGATGTATGGTCA-AGATCAAGAGCTTGAAGTT 669
||||||||||||| |||||||||||||| ||||||||| | ||| | ||| |||||| ||
Sbjct 598 TTATTCCTGAATCACCTAGATGGCTGGCTATGTATGGT-AGAGAACGAGAACTTGAAATT 656
Query 670 TCGTTGAAAAAACTAAGGGGAGAAAATAGTGATATTCTA-AAGGAAGCTGCTGAAATCAG 728
| ||||| | |||||| ||||||||| |||||||||| ||| |||| |||||||||||
Sbjct 657 ACTTTGAAGAGACTAAGAGGAGAAAATGGTGATATTCTCGAAG-AAGCAGCTGAAATCAG 715
Query 729 AGAAACAGTGGAAATATCCAGAAAAGAGTCTCAAAGTGGAATAAGAGACTTGTTCCATAT 788
|||||| ||||||| ||||||| ||| |||| ||||||| ||||||| |||||| ||||
Sbjct 716 AGAAACGGTGGAAACCTCCAGAAGAGAATCTCGAAGTGGACTAAGAGATTTGTTCAATAT 775
Query 789 CGGAAA-CGCACATTCGTTAATCATTGGATTGGGTTTAATGCTCTTGCAACAATTTTGTG 847
| ||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 776 -GAAAAACGCACATCCGTTGATCATTGGATTGGGCCTAATGCTCTTGCAACAATTTTGTG 834
Query 848 GGAGTGCGGCGATAAGTGCTTATGCTGCTCGAATTTTCGACAAAGCCGGTTTTCCAAGCG 907
||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 835 GGAGTTCGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAGCCGGTTTTCCAAGCG 894
Query 908 ACATAGGAACAACCATCCTCGCAGTGATTCTGATACCGCAATCTATAGTTGTCATGTTAA 967
||||||||||| ||||||| ||||| ||| || |||||||||||||| ||||||||||
Sbjct 895 ACATAGGAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTATAATTGTCATGTTCG 954
Query 968 CCGTTGACCGATGGGGACGCCGACCACTTCTTATGATTTCTTCTATCGGAATGTGCATAT 1027
|||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 955 CCGTCGACCGATGTGGACGCCGACCACTTCTGATGAGCTCTTCTATCGGTCTGTGCATAT 1014
Query 1028 GCTCATTTTTTATTGGCCTTTCATACTACCTTCAGAAG-A--ATGGTGAATTTCAGAAGT 1084
| |||||||||||||||||||||||||| |||||| | ||||||| |||||| |||
Sbjct 1015 GTTCATTTTTTATTGGCCTTTCATACTATCTTCAGGTTTACCATGGTGATTTTCAGGAGT 1074
Query 1085 TATGTTCCGTTATGTTAATCGTCGGTTTAGTGGGTTATGTCTCATCCTTTGGCATTGGCC 1144
| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1075 TTTGTTCCCCTATGTTAATCGTCGGTTTAGTGGGTTATGTCTTATCCTTTGGCATTGGTT 1134
Query 1145 TAGGTGGATTACCATGGGTTATAATGTCTGAGATATTTCCGGTGAATGTGAAAATCACCG 1204
|||||||| ||||||||||||||||||||||| | |||||| ||||||||||||| ||||
Sbjct 1135 TAGGTGGACTACCATGGGTTATAATGTCTGAGGTGTTTCCGATGAATGTGAAAATTACCG 1194
Query 1205 CCGGTAGCCTTGTAAC-GATGTCAAATTGGTTTTTTAATTGGATTATCATCTAT-AGTTT 1262
| |||||||||||||| | | || || |||||||| | |||||||||||| | | |||||
Sbjct 1195 CTGGTAGCCTTGTAACAG-TATCTAACTGGTTTTTCAGTTGGATTATCATTT-TCAGTTT 1252
Query 1263 TAATTTCATGATACAGTGGAGCGCTTCCGGAACATATTTCATATTTTCTGGAGTTTCTCT 1322
|||||||||||| || ||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 1253 TAATTTCATGATGCAATGGAGTGCTTTCGGAACATATTTCATATTTGCTGGAGTTTCTCT 1312
Query 1323 GGTGACGAT-CGTATTCATATGGACATTGGTGCCTGAGACGAAAGGCCGAACACTCGAAG 1381
| || | || |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1313 GATGTC-ATTCGTATTTGTATGGACATTGGTGCCTGAGACGAAAGGCCGAACACTTGAAG 1371
Query 1382 AGATTCAAACA-TCATTAGTCCGACTTTCGTAAAATCTAA 1420
| |||||| || ||| ||| || |||||| |||| |||||
Sbjct 1372 ATATTCAA-CAATCACTAGGCCAACTTTCATAAA-TCTAA 1409
> Ahg477798 jgi|Araly1|477798|fgenesh2_kg.3__499__AT3G05150.1
Length=1554
Score = 56.5 bits (30), Expect = 6e-07
Identities = 38/42 (90%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1156 CCATGGGTTATAATGTCTGAGATATTTCCGGTGAATGTGAAA 1197
||||||||||||||||||||||||||||| | ||| |||||
Sbjct 1223 CCATGGGTTATAATGTCTGAGATATTTCCAATAAATATGAAA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5