BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08910.1
Length=2844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470965 jgi|Araly1|470965|fgenesh2_kg.1__919__AT1G08910.1 3367 0.0
Ahg947562 jgi|Araly1|947562|scaffold_703791.1 281 2e-74
> Ahg470965 jgi|Araly1|470965|fgenesh2_kg.1__919__AT1G08910.1
Length=2804
Score = 3367 bits (1823), Expect = 0.0
Identities = 2449/2734 (90%), Gaps = 112/2734 (4%)
Strand=Plus/Plus
Query 1 ATGGTTATTCCGGCGACTTCTAGGTTTGGGTTTCGTGCTGAATTCAACACCAAGGAGTTT 60
||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 1 ATGGTGATTCCGGCGACTTCTAGGTTTGGGTTTCGAGCTGGATTCGACACCAAGGAGTTT 60
Query 61 CAAGCTTCCTGCATCTCTCTCGCTAATGAAATCGATGCGGCTATTGGGAGAAATGAAGTT 120
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CAAGCTTTCTGCATCTCTCTCGCTAATGAAATCGATGCGGCTATTGGGAAAAATGAAGTT 120
Query 121 CCAGGGAATATTCAAGAGCTCGCTTTAATCCTCAATAATGTGTGCCGACGTAAATGTGAT 180
|||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CCAGTGAATATTCAAGAGCTGGCTTTAATCCTCAATCATGTGTGCCGACGTAAATGTGAT 180
Query 181 GATTATCAAACCAGGGCGGTGGTAATGGCGCTGATGATCTCAGTCAAGAGTGCTTGTCAG 240
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GATTATCAAACGAGGGCGGTGGTAATGGCGCTGATGATCTCAGCCAAGAGTGCTTGTCAG 240
Query 241 CTTGGATGGTTCCCGGAGAGAGAGACTCAAGAATTGTTGGCTATCATAGACTTGATGTGG 300
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 CTTGGATGGTTCCCGCAGAGAGAGACTCAACAACTGTTGGCTATCATAGACTTGATGTGG 300
Query 301 AATGGTTTCAGCTGTCCTGAAAATGTCACCTCTTGTGTAAATAGTCCCGTCACTCTAATA 360
||| |||||||||||||||||| ||||||| || || ||||||| ||||||| |||||||
Sbjct 301 AATAGTTTCAGCTGTCCTGAAACTGTCACCCCTAGTCTAAATAGCCCCGTCAGTCTAATA 360
Query 361 TCGCAGGTCATTGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCGCAGGTCATAGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTT 420
Query 421 GAAGCTAAGCCAGAATCAAAGATGATGATGAAGGACTTCCATATTTCAAAGAAGATGCCA 480
|| ||||||||||||||||||||| || |||| |||||||||||||||||| |||||||
Sbjct 421 GAGGCTAAGCCAGAATCAAAGATGTTGGTGAATGACTTCCATATTTCAAAGGCGATGCCA 480
Query 481 CATTCTCCCAAACAGAAAGTTGGATTATTTGTTGTTCGGACAGAGGACATAAGCAGATCT 540
||||||| |||||||| || ||||||||||| || ||||||||||||||||||||||||
Sbjct 481 CATTCTCACAAACAGAGGGTAGGATTATTTGTGGTCCGGACAGAGGACATAAGCAGATCT 540
Query 541 AATTGTATTGTACATCCACAAGGAGTCAGCTTTTTGTTGAATGGAAAGGGCATTGACAAG 600
|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||
Sbjct 541 AATTGTATTGTACATCCACAAGAAGTCAGCTTTTTGTTAAATGGAAAGGGCGTTGACAAG 600
Query 601 AGAGTTAACATCTCAATGGAGTCTGGGCCGCAGCTTCCAACTAATGTTACTGCCCTGCTA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGTTAACATCTCAATGGAGTCTGGGCCGCAGCTTCCAACTAATGTTACTGCCCTGCTC 660
Query 661 AACCTTGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTGGAGGTAGTTACTTGATTGCT 720
|||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 661 AACCCTGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTCGAGGTAGTTACTTAATTGCT 720
Query 721 ATTGCTTTCATGGATGTCATACCACTGCCCAACAAACCGTTACTGAAAGATTATGTTCAT 780
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 721 ATTGCTTTCATGGATGTCATACCACTGCCCGACAAACCGTTGCTGAAAGATTATGTTCAT 780
Query 781 CCTGAAGTCGTTGGATCAAACTCAGATTGTGACATAATTGAGGGGCCATCGAGGATATCT 840
||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 CCTGAAGTCATTGAATCAAACTCAGATTGTGACATAATTGAGGGGCCATCAAGGATATCT 840
Query 841 CTCAGTTGTCCTATCAGCCGAACGCGTATCAAACTTCCTGTGAAGGGTCATGTCTGTAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTCAGTTGTCCTATCAGCCGAACGCGTATCAAACTTCCTGTGAAGGGTCATGTCTGTAAA 900
Query 901 CATCTTCAGTGTTTTGATTTCTGGAATTATGTCAACATGAACACAAGACGAC-ATCATGG 959
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 901 CATCTTCAGTGTTTTGATTTCTGGAATTATGTCAACATGAATACAAGACGACCATCATGG 960
Query 960 CGCTGCCCGCATT--A-T---TCTA-----GAAGAAGTGGGACGTAATGCTGCAGATGTG 1008
||||||||||||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 961 CGCTGCCCGCATTGCAATCAATCTATTCTAGAAGAAGTGGGACGTAATGCTGCAGATGTG 1020
Query 1009 GTTATCTCTGCTGATGGAACCTGGATGGTTGAGACGGAAAATGATGAGGACGTGGAACTT 1068
|||||||||||||||||||| |||| |||||| | |||||| ||||| ||||||||||||
Sbjct 1021 GTTATCTCTGCTGATGGAACATGGACGGTTGAAATGGAAAACGATGATGACGTGGAACTT 1080
Query 1069 GTGCCAGAAACCACTCATGACCATGGAGACCCAAATAGTTTCATCAACTTGGGGCCTACT 1128
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1081 GTGCCGGAAACCACTCATGACCATGGCGACCCAAATAGTTTCATAAACTTGGGGCCTACT 1140
Query 1129 GTTAAGAATCCTGCCAGAGATGAGAATGAAATGGAAACATCC------ACCCAAGTCGAA 1182
||| ||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 GTTTTGAATCTTGCCAGAGATGAGAATGAAATGGAAACATCCGGTGGCACCCAAGTCGAT 1200
Query 1183 GAACATAATCCTTGTTTATCTGAGATTCAGGGTCCGTCAAATGACACACATAGGCCTGCT 1242
||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 1201 GAACAGAATCCTTGTTTATATGAGATTCAGGGTCCGTCAAATAACACACGTAGGCCTGCT 1260
Query 1243 TCAGATTATACTATGCTTAACCAGTCTCATACTTCAACCAACACACTACCACAGCTGCCA 1302
||||||| ||||||||||||||||||| | |||||| ||||||||| ||||| |
Sbjct 1261 ACAGATTACACTATGCTTAACCAGTCTCCTGCTTCAATCAACACACTGCCACA------A 1314
Query 1303 CGAACTTTGAATGCCTTTGATGGTCAACAATTCGTGAACTTACCACAAGTAATAAACACC 1362
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1315 --A-CTCTGAATGCCTTTGATGGTCAACAATTCGTGAACTTACCACAAGTAGTAAACACC 1371
Query 1363 CGAGATTCACCAGCAAGCCAAGCCTTACCTATGACATTCTCACCAACCCCATCTCCACAA 1422
||||||||| ||||||| |||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 1372 CGAGATTCAGCAGCAAGACAAGCCTTACCTGTGACATTCTTACCAACCTCATCTCCACAA 1431
Query 1423 GATATATTAGCTACTAATGCGGCAAACTTTGGCACATCAATGCCGGCTGCTCAGTCTTCT 1482
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GATATGTTAGCTACTAATGCGGCAAACTTTGGCACATCAATGCCGGCTGCTCAGTCTTCT 1491
Query 1483 CAGTTTCAAGGCTCACATGTTACGTCCCTTGGAAATTGTGAAGGAAGAACTTCTGATTTG 1542
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1492 CAGTTTCAAGGCTCACATGTTACGTCCCTTGGAAATTGTCAAGGAAGAACTTCTGATTTG 1551
Query 1543 ATGGCGAGATGGAACCACATCTATGGACGTGT------TCAAACTCAATTTCCACC---T 1593
|||| |||||||||||||||| ||||||||| |||||||||||| ||||| |
Sbjct 1552 ATGGAGAGATGGAACCACATCCATGGACGTGGCAGAAATCAAACTCAATTGCCACCACCT 1611
Query 1594 GCACCTCTTTCGCATCATCATTATTCAATGCAGAATCAGAGCCCGTCCCCTGCACAGCAA 1653
|||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1612 GCACCTCTGTCGCAGCATCATTATGCGATGCAGAATCAGAGCCCGTCCCCTGCACAGCAA 1671
Query 1654 AGACCAGTGCCATCTTACATTGCACATCCTCAAACTTTTCATGTCAACTACGGAGAGAAC 1713
|||||| ||||||||||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct 1672 AGACCAATGCCATCTTACATTGTACATCCTCAAACTTTACCTGTCAACTACGGAGGGAAC 1731
Query 1714 GCTGACCAAAGATGGATGCCGTCTTCCATTGCACATCCTCAAACTTTACCTGTTAACTAC 1773
|| | |||||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1732 GCCCATCAAAGACCGATGCCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTAT 1791
Query 1774 GGAGG-AA-----AT-A----C---T-AAC-C--A--AA-GACCGATACCATCTTCCATT 1812
||||| || || | | | ||| | | || |||| | ||||||||||||
Sbjct 1792 GGAGGGAACGCCCATCAAAGACCGATGAACGCTGACCAAAGACCAACGCCATCTTCCATT 1851
Query 1813 GCACATCCTC-AAACTTTACCTGTCAACTACAGGGGGAATACTGACCATAGATCGACGCC 1871
|||||| || |||| |||| | | |||||||| ||||| | | || ||| ||| ||
Sbjct 1852 ACACATC-TCCAAACATTAC-T-T-AACTACAGAGGGAACGCCCATCAAAGACCGATTCC 1907
Query 1872 ATATTCCATTACACATCTCCAAACATTAC-T-TAACT-ACGGAGGGAACGCCGATCAAAG 1928
|| |||||||||| |||||||||| |||| | | | | ||| |||| ||||| | |||||
Sbjct 1908 ATCTTCCATTACAAATCTCCAAACTTTACCTGTCAGTTACGAAGGGTACGCCCACCAAAG 1967
Query 1929 ACCAATGCCATCTTCCATTACA-AATCTCCAAACTTTACCTGCCA-CGTACGGAGGGTAC 1986
||| ||| |||||||||||||| |||| | ||||| ||||| || | ||||||||| ||
Sbjct 1968 ACCGATGTCATCTTCCATTACACAATC-CGGAACTTCACCTGTCAAC-TACGGAGGG-AC 2024
Query 1987 -GCCCACCAAAGACCAATGTCATCTTCCATTACACATCCCCGAACTTCACCTGTCAACTA 2045
|| |||| ||||||||| ||||||||||||||||||||| ||||| |||||||| |||
Sbjct 2025 CGCTGACCAGAGACCAATGCCATCTTCCATTACACATCCCCAAACTTTACCTGTCAGCTA 2084
Query 2046 CGGAGGGACCCCTGACCAAAGAC-CAATGCCATCTTCC-ATTACACATCC-CCAAACTTT 2102
|||||||| | |||||||||||| || ||||| || || | |||| ||| ||
Sbjct 2085 CGGAGGGATCGCTGACCAAAGACACA-TGCCAAGA-CCGATG-C-CATCTTCCA---TT- 2136
Query 2103 ACCTGTCAGCTACGGAGGGACCACAGACCAAATACTGAATCCTGGTGGTGCAATGGGACA 2162
|| | || | | | | | | |||||||||||||||||||||||||||||||||
Sbjct 2137 ACATATCT-C--C--A---A--A-A--CCAAATACTGAATCCTGGTGGTGCAATGGGACA 2183
Query 2163 GTTCTCATCACGAGAGTTCATGAATTTGACTCCTGCTAACACTGAGAATTGGCGCCCACA 2222
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2184 GTTCTCATCACGAGACTTCATGAATTTGACTCCTGCTAACACTGAGAATTGGCACCCACA 2243
Query 2223 AAGCCGGATGCGAGGCAGCGTAGCACCTGGTACGGGAT-ATGACCATATGATCATTC-AT 2280
|||||||||||| |||||| |||||||||||||| || |||||||||||||||||| |
Sbjct 2244 AAGCCGGATGCGTGGCAGCCTAGCACCTGGTACGA-ATTATGACCATATGATCATTCGA- 2301
Query 2281 CCTACCCGTCCAGTTC-ATCCACAAGCTCAAACACCTCCTGCGCCTCTTTCAACATCTTA 2339
||||||||||| |||| | |||| ||||||||||| ||||||||||||| | ||| ||||
Sbjct 2302 CCTACCCGTCCGGTTCTA-CCACTAGCTCAAACACTTCCTGCGCCTCTTCCTACAGCTTA 2360
Query 2340 TGATGGAGCAGATGAAATTCAAGCATTTATAGGG-CACCCAAGCTATCCCGTTAGTAATA 2398
| |||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 2361 TAATGGAGCAGATGAAATTCAAGCATTTTT-GGTACACCCAAGCTATCCCGTTAGTAATA 2419
Query 2399 ACGAAACACAAGCGGGTACCAGTTCGTTGCCAGTGGCAGAGGGTCTTGGGTATTCAGGGT 2458
||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2420 ACGAAACGCAAGCGGGGACTAGTTCATTGCCCGTGGCAGAGGGTCTTGGGTATTCAGGGT 2479
Query 2459 CGTTTTGGTCAATGCCTCCTGAGACATGGTGATATCTGATGGCTTAGAGATTGTAGCACA 2518
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2480 CGTTTTGGTCAATGCCTCCTGAGACATGGTGATATATGATGGCTTAGAGATTGTAGCACA 2539
Query 2519 CGGTCACTAACACAATCAGTCAGTAGTAAGTAGTAACAGTATATAACTAAGGCCTTTCtt 2578
|||||||||||| ||||||||||||||||| |||| |||| | ||||||| ||||||
Sbjct 2540 CGGTCACTAACAAAATCAGTCAGTAGTAAG-AGTA----TATA-A-CTAAGGCTTTTCTT 2592
Query 2579 tttttGGTACTTACAGCTTTAGTCTTCGGGTACATATATGGGGCTAAGTTCTTGATGTAG 2638
|||| |||||| |||||||||| |||| |||||||||||||||| |||||||||||||||
Sbjct 2593 TTTT-GGTACTAACAGCTTTAGGCTTCCGGTACATATATGGGGC-AAGTTCTTGATGTAG 2650
Query 2639 CGTATTCGTGAGATTTACTTCATGTGAAACATTA 2672
||||||| ||||||||||||||||||||||||||
Sbjct 2651 CGTATTCCTGAGATTTACTTCATGTGAAACATTA 2684
Score = 470 bits (254), Expect = 3e-131
Identities = 375/429 (87%), Gaps = 25/429 (6%)
Strand=Plus/Plus
Query 1729 ATGCCGTCTTCCATTGCACATCCTCAAACTTTACCTGTTAACTACGGAGGAAATACTAAC 1788
||||| |||| ||||| ||||||||||||||||||||| ||||||||||| || | |
Sbjct 1678 ATGCCATCTTACATTGTACATCCTCAAACTTTACCTGTCAACTACGGAGGGAACGCCCAT 1737
Query 1789 CAAAGACCGATACCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTA--CAGGG 1846
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1738 CAAAGACCGATGCCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTATGGAGGG 1797
Query 1847 ---G---------GA---AT--A--CTGACCATAGATCGACGCCATATTCCATTACACAT 1887
| || || | ||||||| ||| | ||||||| |||||||||||||
Sbjct 1798 AACGCCCATCAAAGACCGATGAACGCTGACCAAAGACCAACGCCATCTTCCATTACACAT 1857
Query 1888 CTCCAAACATTACTTAACTACGGAGGGAACGCCGATCAAAGACCAATGCCATCTTCCATT 1947
||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||||
Sbjct 1858 CTCCAAACATTACTTAACTACAGAGGGAACGCCCATCAAAGACCGATTCCATCTTCCATT 1917
Query 1948 ACAAATCTCCAAACTTTACCTGCCACG-TACGGAGGGTACGCCCACCAAAGACCAATGTC 2006
|||||||||||||||||||||| || | |||| ||||||||||||||||||||| |||||
Sbjct 1918 ACAAATCTCCAAACTTTACCTGTCA-GTTACGAAGGGTACGCCCACCAAAGACCGATGTC 1976
Query 2007 ATCTTCCATTACAC-ATCCCCGAACTTCACCTGTCAACTACGGAGGGACCCCTGACCAAA 2065
|||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| |
Sbjct 1977 ATCTTCCATTACACAAT-CCGGAACTTCACCTGTCAACTACGGAGGGACCGCTGACCAGA 2035
Query 2066 GACCAATGCCATCTTCCATTACACATCCCCAAACTTTACCTGTCAGCTACGGAGGGACCA 2125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2036 GACCAATGCCATCTTCCATTACACATCCCCAAACTTTACCTGTCAGCTACGGAGGGATCG 2095
Query 2126 CAGACCAAA 2134
| |||||||
Sbjct 2096 CTGACCAAA 2104
Score = 217 bits (117), Expect = 5e-55
Identities = 295/374 (79%), Gaps = 39/374 (10%)
Strand=Plus/Plus
Query 1789 CAAAGACCGATACCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTACAGG-GG 1847
|||||||| || ||||||| ||||| |||||||||||||||||||||||||||| || ||
Sbjct 1669 CAAAGACCAATGCCATCTTACATTGTACATCCTCAAACTTTACCTGTCAACTAC-GGAGG 1727
Query 1848 GAATACTGACCATAGATCGACGCCATATTCCATTACACATC-TCCAAACATTAC-T-T-A 1903
||| | | || ||| ||| ||||| ||||||| |||||| || |||| |||| | | |
Sbjct 1728 GAACGCCCATCAAAGACCGATGCCATCTTCCATTGCACATCCTC-AAACTTTACCTGTCA 1786
Query 1904 ACTACGGAGGGAACGCCGATCAAAGACC-A--A----TG-CCA-------------TCTT 1942
|||| |||||||||||| |||||||||| | | || ||| ||||
Sbjct 1787 ACTATGGAGGGAACGCCCATCAAAGACCGATGAACGCTGACCAAAGACCAACGCCATCTT 1846
Query 1943 CCATTACAAATCTCCAAACTTTACCTGCCACGTACGGAGGGTACGCCCACCAAAGACCAA 2002
|||||||| |||||||||| |||| | || ||| ||||| ||||||| |||||||| |
Sbjct 1847 CCATTACACATCTCCAAACATTACTTA--AC-TACAGAGGGAACGCCCATCAAAGACCGA 1903
Query 2003 TGTC-ATCTTCCATTACACATCCCCGAACTTCACCTGTCAACTACGGAGGG-AC-CCCTG 2059
| || ||||||||||||| ||| || ||||| |||||||| |||| |||| || |||
Sbjct 1904 T-TCCATCTTCCATTACAAATCTCCAAACTTTACCTGTCAGTTACGAAGGGTACGCCC-- 1960
Query 2060 ACCAAAGACCAATGCCATCTTCCATTACACA-TCCCCAAACTTTACCTGTCAGCTACGGA 2118
|||||||||| ||| |||||||||||||||| ||| || ||| |||||||| |||||||
Sbjct 1961 ACCAAAGACCGATGTCATCTTCCATTACACAATCCGGAA-CTTCACCTGTCAACTACGGA 2019
Query 2119 GGGACCACAGACCA 2132
|||||| | |||||
Sbjct 2020 GGGACCGCTGACCA 2033
> Ahg947562 jgi|Araly1|947562|scaffold_703791.1
Length=2325
Score = 281 bits (152), Expect = 2e-74
Identities = 602/810 (74%), Gaps = 67/810 (8%)
Strand=Plus/Plus
Query 197 CGGTGGTAATGGCGCTGATGATCTCAGTCAAG-AGTGCTTGTCAGCTT-GGATGGTTCCC 254
||| ||| |||| |||||||||||| || ||| | ||||||||| || |||||||| |
Sbjct 295 CGGCGGTTATGGTGCTGATGATCTCTGTTAAGCA-TGCTTGTCA-TTTGGGATGGTTTTC 352
Query 255 GGAGAGAGAGACTCAAGAA-TTGTTGGCTAT--CATAGACT-TGATGTGGAATGGTTTCA 310
||| ||||||| ||||||| || | ||| | | | || | ||| ||| | ||||
Sbjct 353 GGATAGAGAGAGTCAAGAACTT-ATCGCTCTGGC-T-GA-TGAGATAAGGACTTGTTTTG 408
Query 311 GCTGTCCT-GAA-AATGTCA-CCTCTTGTGTAAATAGTCCCGTCACT-CTAATATCGCAG 366
| || || ||| | | | || || || | ||| |||| | || | | | | ||||||
Sbjct 409 GGAGTTCTGGAAGCA-CT-AGCC-CTGGTATCAATTGTCCTGGCAGTAC-ATTTTCGCAG 464
Query 367 GTCATTGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTTGAAGCT 426
|||| |||||||||||||||| ||| ||||| |||||| |||||||||||||||||| |
Sbjct 465 ATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGTTTCTTTTGAAG-T 523
Query 427 -AA-GCCAG-AATCAAAGATGATGATGAAGGACTTCCATATTTCAAAGAAGATGCCACAT 483
|| || | || | | ||| || | | || || ||||| ||||||| ||||||||
Sbjct 524 GAAGGCTGGCTAT-ACA-ATGCTGGCGCATGATTTTCATATCTCAAAGACTATGCCACAC 581
Query 484 TCTC-CCAAACAGAAAGTT-GGATTATTTGTTGTTCGGACAGAGGACATAAG-CA-GATC 539
|| | || || ||||| || || |||||||||| | |||||| |||| || || | ||
Sbjct 582 TCGCTCC-AAGAGAAAATTCGG-TTATTTGTTGCCCAGACAGACAACAT-AGACACG-TC 637
Query 540 TAATTGTATTGT-ACATCCACAAGGAGTCAGCTTTTTGTTGAATGGAAAGGGCATTGACA 598
| |||||| | | |||| | || ||||||||| || | ||||||||||| |||| |
Sbjct 638 TGCCTGTATT-TCAAATCCTCCAGAAGTCAGCTTCCTGCTAAATGGAAAGGGGGTTGAGA 696
Query 599 AGAGAGTTAACATCT-CAATGGAGT-CTGGGCCGCAGCTTCCAACTAATGTTACTGCCCT 656
|||||||||| || | ||||||| | | ||||| || || || || ||||||||||| |
Sbjct 697 AGAGAGTTAATAT-TGCAATGGA-TACAGGGCCTCAACTCCCTACAAATGTTACTGCACA 754
Query 657 GCT-AAACCT-TGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTGGAGGTAGTTACTTG 714
||| ||| | || | |||||||| |||| || || |||| ||| | |||| |
Sbjct 755 GCTGAAA--TACGGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACATC 812
Query 715 ATTGC-T-ATTGCTTTCA-TGGATGTCATACCACTGCC-CAACAAACC-GTTACTGAAAG 769
| | | | |||||||| | ||| | ||| | ||| || ||||| ||| || ||||
Sbjct 813 A-T-CATAATTGCTTTTACGGGA-CTGGTACTGCCGCCTGAA-AAACCAGTT-CTTAAAG 867
Query 770 ATTATGTTCA-TCCTGAAGTCGTTGGATCAAACT-CAGATTGTGACATAATTGAGGGGCC 827
|||| |||| | ||| |||| ||| ||| || | |||||| ||||| |||||||||||
Sbjct 868 ATTACCTTCAGT-CTGGAGTCATTGAATC-AAGTCCAGATTCAGACATCATTGAGGGGCC 925
Query 828 ATCGAGGA-TATCTCTCAGTTGTCCTATCAGCCG-AACGCGTATCAAACTTCCTGTGAAG 885
||| | || ||||||||| ||||||||| || || || ||| ||||| ||||| || |||
Sbjct 926 ATC-ACGAGTATCTCTCAATTGTCCTATAAGTCGCAA-GCGGATCAAGCTTCCAGTCAAG 983
Query 886 GGTCATG-TCTGTAAACATCTTCAGTGTTTTGATTTCTGGAATTATGTCAACATGAACAC 944
|| || | | |||||||||||||||||||||||||||| ||||||||| |||| || |
Sbjct 984 GGCCA-GTTATGTAAACATCTTCAGTGTTTTGATTTCTCAAATTATGTCCACATAAATAT 1042
Query 945 AAGACGAC--ATCATGGCGCTGCCCGCATT 972
||| || ||| ||||||||||||||||
Sbjct 1043 GAGAA-ACCCATCCTGGCGCTGCCCGCATT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107338310410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5