BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08930.1
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919640 jgi|Araly1|919640|scaffold_100921.1 2608 0.0
> Ahg919640 jgi|Araly1|919640|scaffold_100921.1
Length=1531
Score = 2608 bits (1412), Expect = 0.0
Identities = 1494/1534 (97%), Gaps = 4/1534 (0%)
Strand=Plus/Plus
Query 117 gaagcaggaggagactttttggaatggagagacaaaagagCATGGAAAAAGGGTTACTCA 176
|||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GAAGCA-GA--AGATTTTTTGGAATGGAGAGACAAAAGAGCATGGAAAAAGGGTTACTGA 57
Query 177 GGAAGAGCTTAAGCATACGTGAGAGAAAGTTCCCTAACGAAGACGCTTTCTTAGAATCCG 236
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 58 GAAAGAGCTTAAGCATACGAGAGAGAAAGTTCCCTAACGAAGACGCTTTCTTAGAAGCCG 117
Query 237 GTTTATCGAGGAAGTCTCCGCGAGAGGTCAAGAAACCTCAAAACGACGATGGTGAATGTC 296
||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||| ||||
Sbjct 118 GTTTATCGAGGAAATCTCCGAGAGAGGTCAAGAAACCTCATAACGACGATGATGATTGTC 177
Query 297 GTGTTACCGCCTCTGTTTTCCTCAGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCG 356
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 178 GTGTCACCGCCTCTGTTTTCCTCAGCACCTTTGTTGCCGTCTCTGGCTCCTTCTGTACCG 237
Query 357 GTTGTGGCGTTGGTTTTTCATCGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCT 416
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 238 GTTGTGGCGTTGGTTTTTCATCGGGTGCTCAAGCAGGGATTACCAAAGATTTATCTCTCT 297
Query 417 CCGTTGCAGAATACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCGTTGCAGAATACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG 357
Query 477 TATTCAGCGGTAAAGTCGCTGATGTCTTGGGAAGAAAACGGACGATGTTGTTTTGCGAAT 536
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TATTCAGCGGTAAAGTCGCCGATGTCTTGGGAAGAAAACGGACGATGTTGTTTTGCGAAT 417
Query 537 TCTTCTGTATCACAGGCTGGCTTTGTGTAGCATTGGCTCAGAATGCAATGTGGCTGGACT 596
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 418 TCTTCTGTATCACAGGCTGGCTTTGTGTAGCACTGGCTCAGAATGCAATGTGGTTGGACT 477
Query 597 GTGGAAGATTGTTACTTGGAATCGGCGTTGGTATATTTAGCTACGTGATTCCGGTGTATA 656
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 GTGGAAGATTGTTACTTGGAATCGGCGTTGGTTTATTTAGCTACGTGATTCCGGTGTATA 537
Query 657 TAGCCGAAATTGCACCTAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGTTGATGC 716
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TAGCCGAAATTGCACCAAAACATGTCCGAGGATCGTTTGTGTTCGCCAATCAGTTGATGC 597
Query 717 AAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAA 657
Query 777 CAGTAGTCGGATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGTAGTCGGATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAAT 717
Query 837 CTCCAAGATGGCTGGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTCCAAGATGGCTGGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCC 777
Query 897 TTAGGGGATCTGACGTCGATATTTCTCGTGAAGCAAACACAATTAGAGATACCATTGACA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTAGGGGATCTGACGTCGATATTTCTCGTGAAGCAAACACAATTAGAGATACCATTGACA 837
Query 957 TGACAGAAAACGGTGGTGAAACTAAGATGTCTGAATTGTTTCAGAGACGATACGCATATC 1016
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGACAGAAAACGGTGGTGAAAGTAAGATGTCTGAATTGTTTCAGAGACGATACGCATATC 897
Query 1017 CGTTAATTATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGTTAATTATCGGAGTTGGTTTAATGTTTTTGCAACAATTGTGTGGGAGCTCCGGTGTTA 957
Query 1077 CCTATTATGCTAGTAGCCTCTTCAACAAAGGAGGATTTCCAAGTGCTATTGGCACATCCG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCTATTATGCTAGTAGCCTCTTCAACAAAGGAGGATTTCCAAGTGCTATTGGCACATCCG 1017
Query 1137 TAATAGCCACAATTATGGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGG 1196
|||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 1018 TAATAGCCACAATTATGGTTCCGAAAGCGATGCTGGCAACAATCCTAGTCGATAAAATGG 1077
Query 1197 GGAGGAGAACGCTCCTAATGGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAA 1256
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGAGGAGAACGCTTCTAATGGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAA 1137
Query 1257 GTGTTTCTTACGGTTTCCAGTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTT 1316
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1138 GTGTTTCTTACGGTTTCCAGTCCTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTT 1197
Query 1317 GCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGA 1376
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1198 GCATCGGCGTATTGGGTCACATTGTGTCATTTGCGATGGGAATGGGAGGACTACCATGGA 1257
Query 1377 TTATAATGGCTGAGATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAGTTACTG 1436
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1258 TTATAATGGCTGAGATATTTCCTATGAATGTGAAGGTGTCAGCTGGGACCTTAGTTACCG 1317
Query 1437 TAACCAATTGGTTATTTGGTTGGATTATCACATACACTTTCAATTTTATGCTAGAATGGA 1496
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1318 TAACCAATTGGTTATTTGGTTGGATTATCACATATACTTTCAATTTCATGCTAGAATGGA 1377
Query 1497 ATGCATCAGGAATGTTCCTCATCTTCTCAATGGTCTCCGCCAGTTCGATCGTATTTATAT 1556
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATGCATCAGGAATGTTCCTTATCTTCTCAATGGTCTCCGCCAGTTCGATCGTATTTATAT 1437
Query 1557 ACTTTTTGGTACCTGAGACAAAAGGCCGATCACTTGAAGAAATACAAGCACTGCTCAACA 1616
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1438 ACTTTTTGGTACCTGAGACGAAAGGCCGGTCACTTGAAGAAATACAAGCATTGCTCAACA 1497
Query 1617 ACTCTGTGCAATAATATCAtttttctttt-tctt 1649
||||||||||||||||||||||||||||| ||||
Sbjct 1498 ACTCTGTGCAATAATATCATTTTTCTTTTCTCTT 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70390772760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5