BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08940.1
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334176 jgi|Araly1|334176|fgenesh1_pg.C_scaffold_1000741 1327 0.0
> Ahg334176 jgi|Araly1|334176|fgenesh1_pg.C_scaffold_1000741
Length=846
Score = 1327 bits (718), Expect = 0.0
Identities = 802/843 (95%), Gaps = 3/843 (0%)
Strand=Plus/Plus
Query 3 ATGGTGAATGAGAAGAAGATGCTCCCAAAACGCATCATACTAATGCGTCACGGTGAGTCA 62
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGTGAATGAGAAGAAGATGCTCCCAAAACGCATCATACTAATGCGCCACGGTGAGTCA 60
Query 63 GCCGGTAACATCGACGCAGGGGCTTACGCGACCACACCCGATCACAAGATCCCTCTAACG 122
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 61 GCCGGCAACATCGATGCAGGGGCTTACGCGACAACACCCGATCACAAGATCCCTTTAACA 120
Query 123 GAAGAAGGAAGAGCGCAAGCGCGTGAGGCCGGGAAGAAAATGAGAGCCCTCATATCAACC 182
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GAAGAAGGACGAGCGCAGGCGCGTGAGGCCGGGAAGAAAATGAGAGCCCTCATATCGACT 180
Query 183 CAAAGCGGCGGTGCGTGTGGAGAGAATTGGCGCGTGTACTTCTACGTGTCGCCTTACGAG 242
|| |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CACAGCGGCAGCGCGTGTGGAGAGAATTGGCGCGTGTACTTCTACGTGTCGCCGTACGAG 240
Query 243 AGAACGAGGACGACTTTGAGGGAAGTAGGAAAAGGATTCTCGAGGAAGCGCGTGATAGGA 302
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 AGAACGAGGACGACTTTGAGGGAAGTAGGGAAAGGGTTCTCGAGGAAGCGCGTGATAGGA 300
Query 303 GTGAGGGAAGAGTGTAGGATCAGAGAACAAGATTTTGGGAATTTTCAAGTGGAAGAGAGG 362
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGAGAGAAGAGTGTAGGATTAGAGAACAAGATTTTGGGAATTTTCAAGTGGAAGAGAGG 360
Query 363 ATGAGAGTTGTGAAGGAGACGAGGGAACGTTTCGGTAGATTTTTCTATCGTTTTCCCGAA 422
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGAGAGCTGTGAAGGAGACGAGGGAACGTTTCGGTAGATTTTTCTATCGTTTTCCCGAA 420
Query 423 GGTGAATCCGCCGCCGACGTCTACGATCGTGTTTCTAGTTTTCTGGAGTCTATGTGGAGA 482
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTGAATCTGCCGCCGACGTCTACGATCGTGTTTCTAGTTTTCTGGAGTCTATGTGGAGA 480
Query 483 GACGTGGACATGAACAGGCATCAAGTGGATCCATCAAGTGAACTAAACCTAGTGATTGTG 542
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GACGTGGACATGAACAGGCATCAAGTGGATCCATCAAGTGAACTAAATCTAGTGATTGTG 540
Query 543 TCCCACGGACTGACATCTCGAGTGTTTCTAACAAAATGGTTCAAGTGGACGGTGGCAGAG 602
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 541 TCCCACGGACTGACCTCTCGGGTGTTTCTAACGAAATGGTTCAAGTGGACGGTGGAAGAG 600
Query 603 TTCGAGCGGTTGAATAACTTTGGGAACTGCGAGTTCAGAGTGATGGAGTTGGGTGCGAGC 662
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCGAGCGGTTGAACAATTTTGGGAACTGCGAGTTCAGAGTGATGGAGTTGGGTGCGAGC 660
Query 663 GGAGAGTACACTTTCGCGATACACCACAGTGAAGAAGAGATGTTGGATTGGGGCATGTCT 722
|||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 661 GGAGAGTACACTTTCGCGATACACCATACTGAAGAAGAGATGTTGGATTGGGGGATGTCT 720
Query 723 AAAGATATGATTGATGATCAAAAGGATCGTGTTGATGGGTGTCGTGTAACAACATCAAAC 782
|||||||||||||||||||||||||| ||||||||||| || ||||||||| | | || |
Sbjct 721 AAAGATATGATTGATGATCAAAAGGAACGTGTTGATGGTTGCCGTGTAACATC-T-AA-C 777
Query 783 GATTCTTGTTCATTGCATCTCAATGAGTATTTTGATTTGTTAGATGTCACTGATGATGAA 842
||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 778 GATTCTTGTTCATTGCATCTCCATGAATATTTTGATTTGTTAGATGTGACTGATGATGAT 837
Query 843 GAA 845
|||
Sbjct 838 GAA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33853150296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5