BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G08940.1 Length=913 Score E Sequences producing significant alignments: (Bits) Value Ahg334176 jgi|Araly1|334176|fgenesh1_pg.C_scaffold_1000741 1327 0.0 > Ahg334176 jgi|Araly1|334176|fgenesh1_pg.C_scaffold_1000741 Length=846 Score = 1327 bits (718), Expect = 0.0 Identities = 802/843 (95%), Gaps = 3/843 (0%) Strand=Plus/Plus Query 3 ATGGTGAATGAGAAGAAGATGCTCCCAAAACGCATCATACTAATGCGTCACGGTGAGTCA 62 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGTGAATGAGAAGAAGATGCTCCCAAAACGCATCATACTAATGCGCCACGGTGAGTCA 60 Query 63 GCCGGTAACATCGACGCAGGGGCTTACGCGACCACACCCGATCACAAGATCCCTCTAACG 122 ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 61 GCCGGCAACATCGATGCAGGGGCTTACGCGACAACACCCGATCACAAGATCCCTTTAACA 120 Query 123 GAAGAAGGAAGAGCGCAAGCGCGTGAGGCCGGGAAGAAAATGAGAGCCCTCATATCAACC 182 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 121 GAAGAAGGACGAGCGCAGGCGCGTGAGGCCGGGAAGAAAATGAGAGCCCTCATATCGACT 180 Query 183 CAAAGCGGCGGTGCGTGTGGAGAGAATTGGCGCGTGTACTTCTACGTGTCGCCTTACGAG 242 || |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 CACAGCGGCAGCGCGTGTGGAGAGAATTGGCGCGTGTACTTCTACGTGTCGCCGTACGAG 240 Query 243 AGAACGAGGACGACTTTGAGGGAAGTAGGAAAAGGATTCTCGAGGAAGCGCGTGATAGGA 302 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 241 AGAACGAGGACGACTTTGAGGGAAGTAGGGAAAGGGTTCTCGAGGAAGCGCGTGATAGGA 300 Query 303 GTGAGGGAAGAGTGTAGGATCAGAGAACAAGATTTTGGGAATTTTCAAGTGGAAGAGAGG 362 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGAGAGAAGAGTGTAGGATTAGAGAACAAGATTTTGGGAATTTTCAAGTGGAAGAGAGG 360 Query 363 ATGAGAGTTGTGAAGGAGACGAGGGAACGTTTCGGTAGATTTTTCTATCGTTTTCCCGAA 422 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATGAGAGCTGTGAAGGAGACGAGGGAACGTTTCGGTAGATTTTTCTATCGTTTTCCCGAA 420 Query 423 GGTGAATCCGCCGCCGACGTCTACGATCGTGTTTCTAGTTTTCTGGAGTCTATGTGGAGA 482 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGTGAATCTGCCGCCGACGTCTACGATCGTGTTTCTAGTTTTCTGGAGTCTATGTGGAGA 480 Query 483 GACGTGGACATGAACAGGCATCAAGTGGATCCATCAAGTGAACTAAACCTAGTGATTGTG 542 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 481 GACGTGGACATGAACAGGCATCAAGTGGATCCATCAAGTGAACTAAATCTAGTGATTGTG 540 Query 543 TCCCACGGACTGACATCTCGAGTGTTTCTAACAAAATGGTTCAAGTGGACGGTGGCAGAG 602 |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||| Sbjct 541 TCCCACGGACTGACCTCTCGGGTGTTTCTAACGAAATGGTTCAAGTGGACGGTGGAAGAG 600 Query 603 TTCGAGCGGTTGAATAACTTTGGGAACTGCGAGTTCAGAGTGATGGAGTTGGGTGCGAGC 662 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTCGAGCGGTTGAACAATTTTGGGAACTGCGAGTTCAGAGTGATGGAGTTGGGTGCGAGC 660 Query 663 GGAGAGTACACTTTCGCGATACACCACAGTGAAGAAGAGATGTTGGATTGGGGCATGTCT 722 |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| Sbjct 661 GGAGAGTACACTTTCGCGATACACCATACTGAAGAAGAGATGTTGGATTGGGGGATGTCT 720 Query 723 AAAGATATGATTGATGATCAAAAGGATCGTGTTGATGGGTGTCGTGTAACAACATCAAAC 782 |||||||||||||||||||||||||| ||||||||||| || ||||||||| | | || | Sbjct 721 AAAGATATGATTGATGATCAAAAGGAACGTGTTGATGGTTGCCGTGTAACATC-T-AA-C 777 Query 783 GATTCTTGTTCATTGCATCTCAATGAGTATTTTGATTTGTTAGATGTCACTGATGATGAA 842 ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct 778 GATTCTTGTTCATTGCATCTCCATGAATATTTTGATTTGTTAGATGTGACTGATGATGAT 837 Query 843 GAA 845 ||| Sbjct 838 GAA 840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33853150296 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5