BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08960.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919642 jgi|Araly1|919642|scaffold_100923.1 2671 0.0
> Ahg919642 jgi|Araly1|919642|scaffold_100923.1
Length=1679
Score = 2671 bits (1446), Expect = 0.0
Identities = 1604/1680 (95%), Gaps = 11/1680 (1%)
Strand=Plus/Plus
Query 43 TGAATCTGAATGGCATGGAATTGATTTCTTCTTCAACAATTGGAAACTCAGCTCTGTGTT 102
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 7 TGAATCTGAATGGCATGGAATTGATATCTTCTTCAACCATTGGAAACTCAGCTCTGTGTT 66
Query 103 TAACCCTAATCTCCATTCTCATCTTCTTCTT-C-C-TCACTACAACCACCATTCCCACTT 159
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 67 TAACCCTAATCTCCATTCTCATCTTCTTCTTCCTCTTCACTACAACCACCATTCCCACTT 126
Query 160 TCCCGGATCATCCTCTTCGTTCTCTTCTCGATGACTCCCAAATCACTACGAACAGTAGCT 219
||||||||||||||||||||||||||||||| |||| | |||||||||| |||||
Sbjct 127 TCCCGGATCATCCTCTTCGTTCTCTTCTCGACGACT--C----CACTACGAACTCTAGCT 180
Query 220 CAATCGTTAATCCCAAATCCTCTTGTGTCTCCTCTAGATCCCACGATAATGGCGGCGTCA 279
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 181 CAATCGTTAATCCCAAATCCTCTTGTTTATCCTCTAGATCCCACGATAATGGCGGCGTCA 240
Query 280 TCAACTATTTCTCCCTCCATTACTGTATCTTCAACGAAAACCTATTCTTCTCGATCCCAA 339
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCAACTATTTCTCCCTCCATTACTGTATCTTCAACGAAAACTTATTCTTCTCGATCCCAA 300
Query 340 TATTGTCTCTTCTCATTCTTCTTCACTTTTACATACTCATTAAAACCGCTCAGACTCATT 399
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 301 TCTTGTCTCTTCTCATTCTTCTTCACTTTTACATACTTATCAAAACCGCTCAGACTCACT 360
Query 400 TCTCCACCGTCACTACAAAGCTCGCCGATCGTCTCAATCTCTCTCCAAGCATGGCTGCTG 459
||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||
Sbjct 361 TCTCCACCGTCACTACAAAGCTCGCCGATCGCCTCAATCTCTCTCCCAGTATGGCCGCTG 420
Query 460 TGACTCTTTTAGCCTTAGGTAATGGCGCACCTGATGTCTTTGCCTCTGTTGCCGCCTTGC 519
||||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||
Sbjct 421 TGACTCTCTTAGCCTTGGGTAATGGCGCACCTGACGTGTTTGCCTCTGTTGCTGCTTTGC 480
Query 520 GTGGTGGTCAGTATCGAACCGGATTCGGAGCTATCTTATCCGCTGGAACTTTCGTCTCTG 579
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 481 GTGGTGGTCAGTACCGAACCGGATTCGGTGCTATCTTATCCGCCGGAACTTTCGTCTCTG 540
Query 580 CCTTTGTAGTTGGGTTCGTTGCGATCTATGCAGCGCCGTTTCCGGTGGATGCTGCGTCAT 639
||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 541 CCTTTGTGGTTGGGTTCGTCGCGATCTATGCTGCGCCGTTTCCGGTGGATGCTGCGTCCT 600
Query 640 TTGTCAGAGATGTGCTTTTTTATTTGATTGCTGCTTTGTTCTTGTTCTATGTGTACTTGA 699
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TTGTCAGAGATGTGCTTTTTTATTTGATTGCTGCTTCGTTCTTGTTCTATGTGTACTTGA 660
Query 700 GTGGTGAGATATTTGTGTGGCAAGCTATAGGGTTCGTTGGGTTTTATATATTCTTCGTTG 759
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 GTGGTGAGATATTTGTGTGGCAAGCTATAGGGTTCGTTGGGTTTTATATTTTCTTCGTTG 720
Query 760 GTTTCGTCTTCTGGATGGATTTTGGTACCAATGTTGAGAAAGGGAAAAGTATCAGTGAGG 819
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 GTTTTGTTTTCTGGATGGATTTTGGTACCAATGTTGAGAAAGGGAAAATTATCAGTGAGG 780
Query 820 AAGAGAAGGATTTGTTGAGACTTCAGGATTGTGAGATTGCCGCAGGTTCTCTTG-GGAGT 878
|||||||||||||||||||| ||||||||||||||||||| |||||| |||||| || ||
Sbjct 781 AAGAGAAGGATTTGTTGAGAGTTCAGGATTGTGAGATTGCTGCAGGTCCTCTTGTGG-GT 839
Query 879 TATAAAGCAGAGAAAGAACATCAATTTTCAGGAATTTTTCGGCTTTATGGAACGATCTCG 938
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 TATAAAGCAGAGAAAGACCATCAATTTTCCGGAATTTTTCGGCTTTATGGAACGATCTCG 899
Query 939 AGGATGTGGGAAACTCCTGTATCAGTTCTTTTGAACCTTACCATCCCAAAACCTTCTCCT 998
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGATGTGGGAGACTCCTGTATCAGTTCTTTTGAACCTTACCATCCCAAAACCTTCTCCT 959
Query 999 TCGGAATGGTCTAGGTTTTATCGCTCTGCCAACATTGTTTTCTGCCCTTTTGCCCTTTTA 1058
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTGAATGGTCTAGGTTTTATCGTTCTGCCAACATTGTTTTCTGCCCTTTTGCCCTTTTA 1019
Query 1059 TACACTTGCAACTCTTTTGTACAACTAAACCACCCAATTTCATTCCTCTTTCCAAACACC 1118
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TACACCTGCAACTCGTTTGTACAACTAAACCACCCAATTTCATTCCTCTTTCCAAACACC 1079
Query 1119 CATCTCCCGCTTTGGCTTGTTGTCCTCTTCATGACGTCTTCCCTAGCGTTCCTCCACTTC 1178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CATCTCCCGCTTTGGCTTATTGTCCTCTTCATGACGTCTTCCCTAGCGTTCCTCCACTTC 1139
Query 1179 ACAGTAGAAAAACAACCACCAAAAACCGAGCAACTGCCGGTCATTGTTGTAGCTTTCATA 1238
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1140 ACAGTAGAGAAACAACCACCAAAAACCGAGCAACTGCCAGTCATCGTTGTAGCTTTCATA 1199
Query 1239 ATGAGTGTTTTCTGGATATCAACAATTGCTGGTGAGCTCCTTAACTGCTTGGCTGCGCTT 1298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 ATGAGTGTTTTCTGGATATCAACAATTGCTGGTGAGCTCCTTAACTGCTTGGCTGCACTT 1259
Query 1299 GGAACCCTCCTTAAACTGCCTCCGGCGCTCCTTGGCCTAACCGTTCTTGCTTGGGGAAAC 1358
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1260 GGAACCTTACTTAAACTGCCTCCGGCACTCCTTGGCCTAACCGTTCTTGCTTGGGGAAAC 1319
Query 1359 TCGGTTGGTGACCTAGTTGCTGACGTGGCAGTTGCAAAGGCAGGTAGACCAGCAATGGCT 1418
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1320 TCGGTTGGTGACCTAGTTGCGGACGTGGCAGTTGCAAAGGCAGGAAGACCAGCAATGGCT 1379
Query 1419 ATGGCCGGTTGTTTTGCAGGTCCAATGTTTAACATGCTTGTTGGACTTGGATCGGCCTTG 1478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATGGCCGGTTGCTTTGCAGGTCCAATGTTTAACATGCTTGTTGGACTTGGATCGGCCTTG 1439
Query 1479 GTGATGCAAACAGCTAATGTATATCCAGACGCTTACAAACTTGGATTCCATGTAGGTATT 1538
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1440 GTGATGCAAACAGCTAATGTGTATCCAAACGCTTACAAACTTGGATTCCATGTAGGTATT 1499
Query 1539 GTGATAGCTTTCGTCTTCTTGTTGCTTAGTCTAATGGGATCTCTGTTGGTAATAACCTGG 1598
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1500 GTGATCGCTTTCGTCTTCTTGTTGCTTAGTCTAATGGGATCTCTGTTGGTTATAACCTGG 1559
Query 1599 TCTAGATTCCGAGTTCCGAGATTCTGGGGGATCTGTCTTGTTGGACTGTATGTTGCTTTC 1658
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1560 TCTAGATTCCGAGTTCCGAGATTATGGGGGATCTGTCTTGTTGGACTGTATGTTGCTTTC 1619
Query 1659 ACATTTGTTAGTTTGATCATCGCCAGCGTTTCAACCTGATCATATGCGTGAAGTCTGCAC 1718
|| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1620 ACGTTTGTTAGTTTGATCATCGCCAGCGTTTCAAGTTGATCATACACGTGAAGTCTGCAC 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5