BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08980.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919644 jgi|Araly1|919644|scaffold_100925.1 2191 0.0
> Ahg919644 jgi|Araly1|919644|scaffold_100925.1
Length=1337
Score = 2191 bits (1186), Expect = 0.0
Identities = 1280/1326 (97%), Gaps = 4/1326 (0%)
Strand=Plus/Plus
Query 6 TTGGTCGTCATCTACCTTCTCAGAAAGGGAGCTGCATCAATGGCGACCAATAATGATTTT 65
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TTGGTCATCATCTACCTTCTCAGAACGGGAGCTGCATCAATGGCGACCAATAATGATTTT 60
Query 66 GGAGCTTTCATTGAGAAAGTTACAATCTCTCCAACTTCTACTTCCTCGTCGCCTCCTTCT 125
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GGAGCTTTCATTGAGAAAGTTACAATCTCTCCAACTTCTACTTCCTCGTTGCCTCCTTCT 120
Query 126 CTACAGGGTCTTACTTTCGCCATTAAAGACATTTTTGATGTGGAAGGACGCGTTACCGGT 185
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CTACAGGGTCTTACTTTCGCCATTAAAGACATTTTTGATGTGGAAGGACACGTTACCGGT 180
Query 186 TTTGGTAACCCGGATTGGTTAAGGACACACT-CGGCAGCTACTTCTACAGCTCCAGTAGT 244
||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 181 TTTGGTAACCCGGATTGGTTAAGGACACA-TACGGCAGCTACTTCTACAGCTCCCGTAGT 239
Query 245 TTCATCTCTCTTAGAAGCTGGTGCCACAGCTTTGGGTATTACCATTATGGATGAAATGGC 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TTCATCTCTCTTAGAAGCTGGTGCTACAGCTTTGGGTATTACCATTATGGATGAAATGGC 299
Query 305 TTACAGTATAAACGGAGAAAATGCGCATTATGGGACTCCGAGAAACCCGATTGCTTTCGA 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TTACAGTATAAACGGAGAAAATGCGCATTATGGGACTCCAAGAAACCCGATTGCTTTCGA 359
Query 365 TAGAGTGCCTGGGGGATCATCGAGTGGCTCAGCCGTAGCTGTAGCTGCTCGTCTTGTGGA 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAGAGTGCCTGGCGGATCATCGAGTGGCTCAGCCGTAGCTGTAGCTGCTCGTCTTGTGGA 419
Query 425 TTTTTCTATTGGAACTGATACCGGAGGGAGTGTACGAGTTCCAGCATCTTACTGTGGGAT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TTTTTCTATTGGAACTGATACCGGAGGGAGTGTACGAGTTCCAGCATCTTACTGTGGAAT 479
Query 485 TTTCGGTTTCCGGCCATCCCACGGTGCAGTTTCCACTGTCGGACTTACTCCAATGGCTCA 544
||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 TTTTGGTTTCCGGCCATCGCACGGTGCAGTTTCCACTGTCGGAGTTACTCCAATGGCTCA 539
Query 545 GAGCTTCGACACAGTTGGATGGTTTGCTCGGGACACAGCCACTTTGAAACGTGTAGGTTG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 GAGCTTCGACACAGTTGGATGGTTTGCTCGGGACACAGCCACTTTGAAACGTGTAGGCTG 599
Query 605 CGTTCTCCTGCAGCAGCATCACTTGAACCCCATCGAACCATCTCAACTGATTATCGCGGA 664
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 600 CGTTCTCCTGCAGCAGGATCACTTGAACCCCATCGAACCATCTCAATTGATTATCGCAGA 659
Query 665 TGACTGCTTCAAGCTGTGTAGTGTACCGCATGATCTCTTGGTGCAGCCTCTGGTTGGATC 724
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 660 TGACTGCTTCAAGCTGTGTAGTGTACCACATGATCTGTTGGTGCAGCCTCTAGTTGGATC 719
Query 725 CGTGGAAAAATCGTTTGGAGGCAACACTGTAGTAAAGAAGGTGAATCTTGGAGAGTACAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 CGTGGAAAAATCGTTTGGAGGCAACACTGTAGTAAAGAAGGTGAATCTTGGAGAGTATAT 779
Query 785 TGGACAGAATGTTCCAAGCCTTAAACATTTCATGACAAGTGACGATGTCACTACACAACA 844
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TGAACAGAATGTTCCAAGCCTTAAACATTTCATGACAAGTGACGATGTCACGACACAACA 839
Query 845 AGAGTTCTGCATTCCGTCTCTCATGGCCCTATCGAGTTCAATGAGATTGTTACAAAGACA 904
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 840 AGAGTTCTGCATTCCGTCTCTCATGGCTCTATCGAGTTCAATGAGATTGTTACAGAGGCA 899
Query 905 TGAATTCAAGATAAACCACGGTGCATGGATCTCGTCGGTGAAGCCAGAGTTTGGTCCTGG 964
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 900 TGAATTCAAGATAAACCACGGTGCATGGATCTCGTTGGTGAAGCCAGAGTTTGGTCCTGG 959
Query 965 AATATCAGAACGAATTGAGGAAGCTATCAGAACATCCGACGAGAAGATCGACCATTGCCG 1024
|||||||| |||||| |||||||||||||| || || || ||||||||||||| ||||||
Sbjct 960 AATATCAGCACGAATCGAGGAAGCTATCAGGACGTCTGAAGAGAAGATCGACCTTTGCCG 1019
Query 1025 GTCCGTGAAATCTGAACTGATAACGGCTCTTTCAACTTTGCTCGGGGAGAAGGGTGTGTT 1084
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTCCGTGAAATCTGAACTAATAACGGCTCTTTCAACTTTGCTCGGGGAGAAGGGTGTGTT 1079
Query 1085 GGTGATTCCAACGGTACCAGGTCCTCCACCGCATCTCCAAGCTAATGTGGCTGCACTTGA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGTGATTCCAACGGTACCAGGTCCTCCACCGCATCTCCAAGCTAATGTGGCTGCACTTGA 1139
Query 1145 ATCTTTCCGCAGCAGAGCCTTCAGCTTGTTGTCGATCG-CAGGCGTTTCTGGATTCTGTC 1203
|||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct 1140 ATCTTTCCGCAGCAGAGCCTTCAGCTTGTTGTCGATAGGC-GGAGTTTCTGGATTCTGTC 1198
Query 1204 AGGTGAGCATACCATTGGGGCTACACGAAAATCTTCCGGTTTCGGTATCATTGGTAGCTA 1263
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 AGGTGAGCATACCATTGGGGCTACACGAAAATCTTCCGGTATCGGTATCATTGGTAGCTA 1258
Query 1264 AGTATGGCTCAGACGGTTTTCTTCTGAGTCTTGTGGATTCCCTTGCTGCATTTATTTGAT 1323
||||||||||||||||||||||||| || ||||||||||||||| | ||||| |||||||
Sbjct 1259 AGTATGGCTCAGACGGTTTTCTTCTCAGCCTTGTGGATTCCCTTACGGCATTCATTTGAT 1318
Query 1324 TGACAT 1329
||||||
Sbjct 1319 TGACAT 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5