BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G08990.1
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470978 jgi|Araly1|470978|fgenesh2_kg.1__932__AT1G08990.1 2693 0.0
> Ahg470978 jgi|Araly1|470978|fgenesh2_kg.1__932__AT1G08990.1
Length=1824
Score = 2693 bits (1458), Expect = 0.0
Identities = 1716/1837 (93%), Gaps = 32/1837 (2%)
Strand=Plus/Plus
Query 1 ATGGGGGCCAAAAGCAA-AAGTTCGAGTACGAGATTTTTTATGTTTTATCTTATACTAAT 59
|||||||| |||| ||| || |||||| | |||| |||||||||||||||||||||||||
Sbjct 1 ATGGGGGCAAAAAACAATAA-TTCGAGCAGGAGAATTTTTATGTTTTATCTTATACTAAT 59
Query 60 ATCATTGTCGTTTTTGGGTTTGCTCTTAAACTTTAAACCTCTGTTTCTGCTCAACCCCAT 119
| |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 60 AACATTGTCGTTTTTGGGTTTGGTCCTAAACTTTAAACCTCTGTTTCTGCTCAATCCCAT 119
Query 120 GATCGCTTCTCCTTCGATAGTTGAGATTCGTTATTCTTTGCCGGAACCGGTTAAACGG-A 178
|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 120 GATCAAATCTCCTTCGATAGTAGAGATTCGTTATTCTTTGCCGGAACCGGTTAACCGGCA 179
Query 179 CTCCGATATGGCTCCGACTCATTAGAAACTATCTTCCGGATGAGAAAAAGATCCGAGTGG 238
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 180 C-CCGATATGGCTCCGACTCATCAGAAACTATCTTCCGGATGAGAAAAAGATCCGGGTGG 238
Query 239 GTCTTCTCAACATCGCAGAGAACGAGCGAGAGAGCTACGAGGCAAGCGGGACGTCGATCT 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTCTTCTCAACATCGCAGTGAACGAGCGAGAGAGCTACGAGGCAAGCGGGACGTCGATCT 298
Query 299 TGGAGAATGTCCACGTGTCGCTCGATCCTCTTCCGAACAATCTGACAT-GGACGAGTTTA 357
|| ||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||
Sbjct 299 TGAAGAATGTCCACGTGTCGCTCGATCCTCTTCCGAACAATCTGACGTGGGA-GAGATTA 357
Query 358 TTCCCGGTTTGGATCGACGAGGATCACACGTGGCACATTCCTAGTTGTCCAGAAGTCCCT 417
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 TTCCCGGTTTGGATCGACGAGGATCACACGTGGCACACTCCTAGTTGTCCAGAAGTCCCT 417
Query 418 CTCCCTAAGATGGAAGG-TTCCGAAGCTGACGTGGACGTCGTCGTTGTCAAAGTCCCGTG 476
||||||||||||||||| | ||| |||||||| ||||| |||||||||||||| || ||
Sbjct 418 CTCCCTAAGATGGAAGGAAT-CGATGCTGACGTAGACGTGGTCGTTGTCAAAGTTCCATG 476
Query 477 CGATGGTTTCTCGGAGAAGAGAGGGTTAAGAGACGTTTTCAGGCTACAGGTGAATCTGGC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGATGGTTTCTCGGAGAAGAGAGGGTTAAGAGACGTTTTCAGGCTACAGGTGAATCTGGC 536
Query 537 GGCAGCGAATCTTGTGGTGGAGAGTGGTCGGAGGAATGTTGATCGGACT-GTGTACGTTG 595
|||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 537 GGCAGCGAATCTTGCGGTGGAGAGTGGTTGGAGGAATGTTGATCGGA-TGGTGTACGTTG 595
Query 596 TCTTCATCGGATCTTGTGGGCCTATGCATGAGATCTTTAGGTGTGATGAGCGCGTGAAGC 655
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 596 TCTTCATCGGATCATGTGGGCCTATGCATGAGATCTTTAGGTGTGACGAGCGCGTGAAGC 655
Query 656 GCGTGGGGGACTATTGGGTCTATAGGCCTGATCTTACGAGGTTGAAGCAGAAGCTTCTCA 715
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 656 GCGTGGGGGACTATTGGGTGTATCGGCCTGATCTTACCAGGTTGAAGCAGAAGCTTCTCA 715
Query 716 TGCCTCCTGGTTCATGTCAGATTGCTCCGCTAGGTCAAGGAGAAGCATGGATACAAGACA 775
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 716 TGCCTCCTGGTTCATGTCGGATTGCTCCGCCAGGTCAAGAAGAAGCATGGATACAAGACA 775
Query 776 AGAACAGAAA-TCTCACATCCGA-AAAAACTACATTATCATCATTTACTGCCCAACGTGT 833
|||||| ||| |||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 776 AGAACA-AAAGTCTCACATCC-ACAAAAACTACATTATCATCAATTACTGCCCAACGTGT 833
Query 834 CGCTTACGTGACGTTACTACACTCATCGGAGGTATACGTATGCGGAGCAATAGCCTTAGC 893
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 834 CGCTTACGTGACGTTACTACACTCATCGGAGGTCTACGTATGCGGGGCAATAGCCTTAGC 893
Query 894 ACAAAGCATAAGGCAATCTGGATCAACCAAGGACATGATTCTCCTCCACGATGACTCTAT 953
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 894 ACAAAGCATAAGGCAATCTGGATCAACCAAGGACATGGTACTCCTCCACGATGACTCCAT 953
Query 954 AACCAACA-TCTCTCTCATTGGCCTAAGCCTTGCTGGCTGGAAACTACGGCGAGTGGAGA 1012
||| |||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 954 AACAAACAGT-TCTCTCATTGGCCTAAGCCTTGCCGGCTGGAAACTACGGCGAGTAGAGA 1012
Query 1013 GAATTCGTAGTCCTTTTTCCAAGAAGCGTTCTTACAATGAGTGGAACTACAGTAAGTTAC 1072
|||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 GAATCCGTAGCCCTTTCTCCAAGAAACGTTCTTACAATGAGTGGAACTACAGTAAGTTAC 1072
Query 1073 GTGTGTGGCAAGTGACAGATTACGACAAACTAGTGTTTATAGACGCAGACTTCATCATCG 1132
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1073 GTGTGTGGCAAGTGACAGATTACGATAAGCTAGTGTTCATAGACGCAGACTTCATCATCG 1132
Query 1133 TCAAGAATATTGATTACCTTTTCTCCTATCCTCAACTTTCTGCCGCTGGCAATAACAAAG 1192
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1133 TCAAGAATATTGATTACCTTTTCTTCTATCCTCAACTTTCTGCCGCTGGCAATAACAAAG 1192
Query 1193 TCTTGTTCAACTCAGGAGTCATGGTTCTGGAGCCATCAGCTTGTTTATTCGAGGATTTGA 1252
|| |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1193 TCATGTTCAACTCCGGAGTCATGGTTCTGGAGCCATCAGCTTGCTTGTTCGAGGATTTGA 1252
Query 1253 TGCTTAAATCATTCAAGATCGGGTCATACAACGGGGGAGACCAAGGATTTCTGAACGAAT 1312
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1253 TGCTCAAATCATTCAAGATTGGGTCTTACAACGGGGGAGACCAAGGATTTCTGAACGAAT 1312
Query 1313 ATTTCGTGTGGTGGCATAGGTTATCAAAACGTTTAAATACGATGAAATACTTTGGTGATG 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1313 ATTTCGTGTGGTGGCATAGGTTATCAAAACGTTTAAATACGATGAAATACTTCGGCGATG 1372
Query 1373 AAAGCAGGCATGATAAAGCGCGCAATCTTCCAGAAAATTTAGAGGGCATACACTACTTGG 1432
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1373 AAAGCAGGCATGATAAAGCACGCAATCTTCCAGAAAATTTAGAGGGCATCCACTACTTGG 1432
Query 1433 GACTAAAACCATGGCGATGTTACAGAGACTACGATTGTAACTGGGACTTGAAAACGCGAC 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GACTAAAACCATGGCGATGTTACAGAGACTACGATTGTAACTGGGACTTGAAAACGCGAC 1492
Query 1493 GTGTGTATGCAAGCGAGTCGGTGCATGCGAGATGGTGGAAAGTGTACGACAAGATGCCTA 1552
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1493 GTGTGTATGCAAGCGAGTCGGTGCATGAGAGATGGTGGAAAGTGTACGACAAGATGCCCA 1552
Query 1553 AGAAGCTGAAAGGTTATTGTGGTTTGAATCTTAAGATGGAGAAGAACGTTGAGAAGTGGA 1612
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1553 AGAAGTTGAAAGGTTATTGTGGTTTGACTCTTAAGATGGAGAAGAACGTTGAGAAGTGGA 1612
Query 1613 GGAAAATGGCTAAGCTCAATGGTTTTCCTGAAAATCATTGGAAAATTAGAATAAAAGATC 1672
||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 1613 GGAGAATGGCTAAGCTCGGTGGTTTTCCTGAAAACCATTGGAAAATTAGAGTAAGAGATC 1672
Query 1673 CTAGGAAGAAGAACCGTCTAAGTCAATGAGAAGAGTCATCA-AAC-TCGCTTATTCAACA 1730
||||||||||||||||||| |||||||||||||||| |||| || | ||||||||||||
Sbjct 1673 CTAGGAAGAAGAACCGTCTGAGTCAATGAGAAGAGTAATCATAAAGTTGCTTATTCAACA 1732
Query 1731 AGAGACTTAAtttttt-tt-tttt--CTTT-AC-GT-A-A-AGATTTTGAAAGGGAATTT 1781
|||||||| |||||| || |||| | | | | | | |||||||||| ||||||||
Sbjct 1733 AGAGACTTTTTTTTTTGTTCTTTTGACGTAGAGAGAGACACAGATTTTGAAGGGGAATTT 1792
Query 1782 AATTTCTAACAGGTAATTGTGGATTATGAAGGAAAAA 1818
||| |||| |||||||||||| ||||||||||
Sbjct 1793 -----CTATCAGGCAATTGTGGATTAAGAAGGAAAAA 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71647750845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5