BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09000.1
Length=2270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470979 jgi|Araly1|470979|fgenesh2_kg.1__933__AT1G09000.1 3550 0.0
Ahg314880 jgi|Araly1|314880|fgenesh1_pm.C_scaffold_1003660 1408 0.0
Ahg359650 jgi|Araly1|359650|fgenesh1_pg.C_scaffold_603000001 93.5 6e-18
Ahg355279 jgi|Araly1|355279|fgenesh1_pg.C_scaffold_7002452 93.5 6e-18
Ahg339408 jgi|Araly1|339408|fgenesh1_pg.C_scaffold_2001507 93.5 6e-18
> Ahg470979 jgi|Araly1|470979|fgenesh2_kg.1__933__AT1G09000.1
Length=2245
Score = 3550 bits (1922), Expect = 0.0
Identities = 2160/2270 (95%), Gaps = 35/2270 (2%)
Strand=Plus/Plus
Query 5 ACACTTTTGTGCCGACCGATGAATCAAAATTAGAGTAACAGTGAAACGCA-----TTCTT 59
||||||||||||||||||||||| | ||| ||||| |||||||||| || |||||
Sbjct 1 ACACTTTTGTGCCGACCGATGAAAC-AAA--AGAGTCACAGTGAAACCCATCTTCTTCTT 57
Query 60 CCCTCAATCGTTCAAATGCAAGATTTCTTCGGCTCCGTTCGTCGATCGCTTGTTTTCCGT 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CCCT-AATCGTTCAAATGCAAGATTTCTTCGGCTCCGTTCGTCGATCGCTTGTTTTCCGT 116
Query 120 CCTTCTTCCGACGACGATAACCAGGAGAACCAGCCTCCGTTTCCCGGTGTTCTCGCCGAT 179
||| ||||||||||||||||||||||||| |||||||| || |||||| | |||||||||
Sbjct 117 CCTACTTCCGACGACGATAACCAGGAGAATCAGCCTCCATTACCCGGTCTCCTCGCCGAT 176
Query 180 AAGATCACCTCTTGCATCCGCAAATCGAAGATTTTTATCAAACCCTCCTTCTCGCCTCCT 239
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 177 AAGATCACCTCCTGCATCCGCAAATCGAAGATTTTTATCAAACCCTCCTCCTCGCCTCCT 236
Query 240 CCTCCTGCTAACACTGTAGACATGGCACCTCCGATTTCGTGGAGGAAAGGTCAGTTAATT 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CCTCCTGCTAACACCGTAGACATGGCACCTCCGATTTCGTGGAGGAAAGGTCAGTTAATT 296
Query 300 GGTCGCGGCGCGTTTGGTACGGTGTACATGGGTATGAATCTTGACTCCGGGGAGCTTCTC 359
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 GGTCGCGGCGCGTTCGGTACGGTGTACATGGGTATGAATCTCGACTCCGGGGAGCTTCTC 356
Query 360 GCCGTCAAACAGGTTCTGATTGCAGCCAATTTTGCTTCCAAGG-AAAAGACTCAGGCTCA 418
||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 357 GCCGTTAAACAGGTTCTGATTGCAGCCAATTTTGCTTCCAAGGAAAAAG-CTCAGGCTCA 415
Query 419 TATTCAGGAGCTTGAAGAAGAAGTTAAGCTTCTTAAAAATCTCTCCCATCCTAATATAGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 416 TATTCAGGAGCTTGAAGAAGAAGTTAAGCTTCTTAAAAATCTCTCCCATCCAAATATAGT 475
Query 479 TAGATATTTGGGTACAGTGAGGGAAGATGATACCCTGAATATCCTTCTCGAGTTTGTTCC 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 TAGATATTTGGGTACAGTGAGGGAAGATGATACGCTGAATATCCTTCTCGAGTTTGTTCC 535
Query 539 CGGTGGATCGATATCATCGCTCTTGGAGAAATTTGGACCTTTTCCTGAATCAGTTGTCCG 598
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 536 CGGTGGATCTATATCATCGCTCTTGGAGAAATTCGGACCTTTCCCTGAATCAGTTGTCCG 595
Query 599 GACATACACAAGGCAACTGCTTTTAGGGTTGGAGTACCTGCACAATCATGCAATTATGCA 658
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 GACATACACGAGGCAGCTGCTTTTAGGGTTGGATTACCTGCACAATCATGCAATTATGCA 655
Query 659 CAGAGACATTAAGGGGGCTAATATCCTTGTGGATAATAAAGGATGCATTAAGCTTGCTGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 656 CAGAGACATTAAGGGGGCTAATATCCTTGTGGATAATAAAGGATGCATTAAACTTGCTGA 715
Query 719 TTTTGGTGCATCCAAACAAGTAGCTGAGTTGGCTACGATGACTGGTGCAAAATCTATGAA 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTTTGGTGCATCTAAACAAGTAGCTGAGTTGGCTACGATGACTGGTGCAAAATCTATGAA 775
Query 779 AGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTCTCTGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTCTCTGC 835
Query 839 TGACATATGGAGCGTCGGCTGTACAGTTATTGAAATGGTGACTGGGAAGGCTCCTTGGAG 898
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGATATATGGAGCGTAGGCTGTACAGTTATTGAAATGGTGACTGGGAAGGCTCCTTGGAG 895
Query 899 TCAGCAGTATAAAGAGGTTGCTGCTATCTTCTTCATAGGAACAACAAAATCACATCCTCC 958
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 TCAGCAGTATAAAGAGGTTGCTGCTATCTTCTTCATCGGAACAACAAAATCACATCCTCC 955
Query 959 AATACCTGATACTCTCTCCTCTGATGCAAAAGATTTTCTGCTCAAGTGTCTGCAGGAGGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AATACCTGATACTCTCTCCTCTGATGCAAAAGATTTTCTGCTCAAGTGTCTGCAGGAGGT 1015
Query 1019 ACCAAATCTGCGGCCAACCGCATCTGAGCTACTAAAGCATCCTTTTGTTATGGGGAAACA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1016 ACCAAATCTGCGGCCAACCGCATCTGAGCTACTAAAGCATCCTTTTGTTATGGGAAAACA 1075
Query 1079 CAAGGAGTCTGCTTCTACTGATCTTGGTTCTGTCCTGAACAATCTTAGCACTCCACTACC 1138
|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1076 CAAGGAATCTGCTTCTACTGATCTTGGTTCTGTCATGAACAATCTTAGTACTCCACTACC 1135
Query 1139 GTTACAGATAAATAACACCAAGAGCACTCCAGATTCTACTTGCGACGATGTAGGTGACAT 1198
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1136 GTTACAGATAAATAACACTAAGAGCACTCCAGATTCTACATGCGACGATGTAGGTGACAT 1195
Query 1199 GTGTAACTTTGGCAGTTTGAATTATTCACTTGTAGATCCTGTGAAATCAATCCAAAACAA 1258
||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 1196 GTGTAACTTGGGCAGTTTGAACTATTCACTTGTAAATCCTGTGAAATCAATGCAAAACAA 1255
Query 1259 AAATTTATGGCAACAAAATGATAATGGAGGTGATGAAGACGATATGTGTTTGATAGATGA 1318
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1256 ACATTTATGGCAACAAAATGATAATGGAGGTGATGAAGACGATATGTGTTTGATTGATGA 1315
Query 1319 TGAGAATTTCTTGACATTTGACGGAGAAATGAGTTCTACCCTTGAAAA-AGATTGTCATC 1377
||||||||||||||||||||||||||| ||||| ||||||||| ||| | ||||| |||
Sbjct 1316 TGAGAATTTCTTGACATTTGACGGAGAGATGAGGCCTACCCTTGCAAACA-ATTGTGATC 1374
Query 1378 TGAAGAAGAGCTGTGATGACA-TAAGTGATATGTCCATTGCTTTGAAGTCCAAATTTGAC 1436
|||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TGAAGAAGAGATATGATG-CAATAAGTGATATGTCCATTGCTTTGAAGTCCAAATTTGAC 1433
Query 1437 GAAAGTCCTGGTAATGGAGAGAAAGAGTCTACAATGAGCATGGAATGTGACCAACCTTCA 1496
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1434 GAAAGTCCTGGTAATGGAGAGAAAGAGACTACAATGAGCATGGAATGTGACCAACCTTCA 1493
Query 1497 TACTCAGAGGATGATGATGAGCTGACCGAGTCAAAAATTAAAGCTTTCTTAGATGAGAAG 1556
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1494 TACTCAGAGGATGATGATGAGCTGACCGAGTCAAAAATCAAAGCTTTCTTAGATGAGAAG 1553
Query 1557 GCTGCAGATCTAAAGAAGTTACAGACTCCTCTCTATGAAGAATTCTACAATAGTTTGATC 1616
|||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||
Sbjct 1554 GCTGCAGATCTAAAGAAGTTACAGACGCCTCTTTATGAAGAATACTACAATAGTATGATC 1613
Query 1617 ACATTCTCTCCCAGTTGTATGGAGAGTAATTTAAGTAACAGTAAAAGAGAGGACACTGCT 1676
| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1614 ATATGCTCTCCCAGTTGTATGGAGAGTAATTTATGTAACAGTAAAAGAGAGGAAACTGCT 1673
Query 1677 CGTGGTTTCCTGAAACTGCCTCCAAAAAGCAGGTCACCGAGTCGGGGCCCTCTTGGTGGT 1736
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1674 CGTGGTTTCCTGAAACTGCCTCCAAAAAGCAGGTCACCGAGTCGGGGTCCTCTTGGTGGT 1733
Query 1737 TCACCTTCAAGAGCAACAGACGCAACTAGTTGTTCCAAGAGCCCAGGAAGTGG-AGGTAG 1795
||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1734 TCACCTTCAAGAGCAGCAGACACAACTAGTTGTTCCAAGAGCCCAGGAAGTGGTAG-TAG 1792
Query 1796 TCGTGAATTGAATATTAACAATGGAGGTGATGAAGCTTCACAGGATGGTGTATCAGCACG 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1793 TCGTGAATTGAATATTAACAATGGAGGTGATGAAGCTTCACAGGATGGTGTATCAGCTCG 1852
Query 1856 GGTCACAGACTGGAGGGGTCTCGTTGTTGACACT-AAGCAGGAATTAAGCCAGTGTGTTG 1914
|||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 1853 GGTCACAGACTGGAGGGGTCTCGTTGTTGACACTGAA-CAGGAATTAAGCCAGAGTGTTG 1911
Query 1915 CTTTGTCAGAGATAGAGAAGAAGTGGAAGGAAGAGCTTGATCAAGAACTGGAAAGAAAGC 1974
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1912 CTCTGTCAGAGATAGAGAAGAAGTGGAAGGAAGAGCTTGACCAAGAACTGGAAAGAAAGC 1971
Query 1975 GACAAGAAATCATGCGCCAAGCAGGGTTGGGATCATCCCCAAGAGACAGAGGCATGAGCC 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1972 GACAAGAAATCATGCGCCAAGCAGGGTTGGGATCATCCCCAAGAGACAGAGGCTTGAGCC 2031
Query 2035 GACAGAGAGAGAAGTCGAGGTTTGCATCACCAGGAAAATGACTTGCACAAAAAGTCTCCG 2094
|||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||
Sbjct 2032 GACAGAGAGAGAAGTCCAGGTTTGCATCACCAGGAAAATGACATGTACAAAATGTCTCCG 2091
Query 2095 GCTTTTTGATTTTTGATTGCTCAACTAGTATATATATCTGTAACTCTTATCTTGCTGTGA 2154
|||||| |||||||||||||||||||||||||||||| ||||||| | || |||||||||
Sbjct 2092 GCTTTT-GATTTTTGATTGCTCAACTAGTATATATATATGTAACT-T-ATTTTGCTGTGA 2148
Query 2155 TGAAAAGTAGACACGAGGTTTGGTCTGAATATATGATTCTGAACTGGTTGTTGAAGGTAT 2214
|||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 2149 TGAAAAGTAGACTCGAGGTTTGATCTGAATATATGATTCTGAGCAGGTTGTTGAAGGTA- 2207
Query 2215 TAGATGTGTGTAATGTGAGTGTCGGGTGCATATTTAAGTGCGCTACAAAT 2264
| |||| | ||| | ||||||||||||||||||||||||||||
Sbjct 2208 -A--TGTG---A--GTG--T--CGGGTGCATATTTAAGTGCGCTACAAAT 2245
> Ahg314880 jgi|Araly1|314880|fgenesh1_pm.C_scaffold_1003660
Length=1959
Score = 1408 bits (762), Expect = 0.0
Identities = 1441/1760 (82%), Gaps = 81/1760 (5%)
Strand=Plus/Plus
Query 75 ATGCAAGATTTCTTCGGCTCCGTTCGTCGATCGCTTGTTTTCCGTCCT-TCTTCCGACGA 133
||||||||| ||||||| || ||||| || || || | ||||||| || | |||||||
Sbjct 1 ATGCAAGATCTCTTCGGATCAGTTCGCCGGTCACTAGCTTTCCGTACTAAC-GCCGACGA 59
Query 134 CGATAACCAGGAGAA-C--CAGCCTCCGTTTCCCGGTGTTCTCGCCGATAAGATCACCTC 190
|| ||||| ||||| | | ||||||||||| | | ||||||||||| ||||| ||
Sbjct 60 TGACAACCAAGAGAATCATCCTCCTCCGTTTCCTACTCTCCTCGCCGATAAAATCACTTC 119
Query 191 TTGCATCCGCAAATCGAAGATTTTTATCAAACCCTCCTTCTCGCCTCCTCCTCCTGCTAA 250
|| ||||||||||| | | |||| |||| ||| | || || || ||| ||
Sbjct 120 GTGTATCCGCAAATCCATGGTTTTCGCCAAA-CCT-AAT-TCACCACCACCT--AACT-C 173
Query 251 CACTGTAGACATGGCACCTCCGATTTC-GTGGAGGAAAGGTCAGTTAATTGGTCGCGGCG 309
||| ||| | | | |||||||| ||| |||| ||||||||||||||||||| || || |
Sbjct 174 CACCGTACAGACGAAACCTCCGA-TTCGGTGGCGGAAAGGTCAGTTAATTGGCCGTGGTG 232
Query 310 CGTTTGGTACGGTGTACATGGGTATGAATCTTGACTCCGGGGAGCTTCTCGCCGTCAAAC 369
| |||||||| ||||| ||||| |||||||| || ||||| |||||||||||||| ||||
Sbjct 233 CTTTTGGTACTGTGTATATGGGGATGAATCTCGATTCCGGTGAGCTTCTCGCCGTTAAAC 292
Query 370 AGGTTCTGATTGCAGCCAATTTTGCTTCCAAGGAAAAGACTCAGGCTCATATTCAGGAGC 429
||||| |||||||| | |||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 293 AGGTTTTGATTGCATCTAATTGTGCATCCAAGGAAAAAACTCAGGCTCATATTCAGGAGC 352
Query 430 TTGAAGAAGAAGTTAAGCTTCTTAAAAATCTCTCCCATCCTAATATAGTTAGATATTTGG 489
||||||| ||||| ||||| || || |||||||||||||| |||||||| || |||||||
Sbjct 353 TTGAAGAGGAAGTGAAGCTACTCAAGAATCTCTCCCATCCAAATATAGTCAGGTATTTGG 412
Query 490 GTACAGTGAGGGAAGATGATACCCTGAATATCCTT-CTCGAGTTTGTTCCCGGTGGATCG 548
|||| |||||||||||||| || |||| || ||| || || |||||||| ||||||||
Sbjct 413 GTACGGTGAGGGAAGATGAAACTTTGAACAT-CTTGCTTGAATTTGTTCCTGGTGGATCT 471
Query 549 ATATCATCGCTCTTGGAGAAATTTGGA-CCTTTTCCTGAATCAGTTGTCCGGACATACAC 607
||||| || || ||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 472 ATATCTTCACTTTTGGAGAAATTTGGATCC-TTTCCTGAATCTGTTGTTCGGACATACAC 530
Query 608 AAGGCAACTGCTTTTAGGGTTGGAGTACCTGCACAATCATGCAATTATGCACAGAGACAT 667
|| ||||||||||||||| ||||||||||| ||||||||||| ||||||||| | |||||
Sbjct 531 AAAGCAACTGCTTTTAGGCTTGGAGTACCTTCACAATCATGCTATTATGCACCGTGACAT 590
Query 668 TAAGGGGGCTAATATCCTTGTGGATAATAAAGGATGCATTAAGCTTGCTGATTTTGGTGC 727
|||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 591 TAAGGGTGCTAATATCCTTGTGGATAATCAAGGATGCATTAAACTTGCTGATTTTGGTGC 650
Query 728 ATCCAAACAAGTAGCTGAGTTGGCTACGATGACTGGTGCAAAATCTATGAAAGGGACACC 787
||||||||| ||||||||||||||||| || | ||||| ||||||||||||||||| ||
Sbjct 651 ATCCAAACAGGTAGCTGAGTTGGCTACTATTTCGGGTGCCAAATCTATGAAAGGGACTCC 710
Query 788 ATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTCTCTGCTGACATATG 847
||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct 711 CTATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGGCATAGCTTTTCTGCTGATATTTG 770
Query 848 GAGCGTCGGCTGTACAGTTATTGAAATGGTGACTGGGAAGGCTCCTTGGAGTCAGCAGTA 907
|||||| || || ||||| ||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 771 GAGCGTAGGTTGCACAGTGATTGAAATGGTAACTGGCAAAGCTCCTTGGAGCCAGCAGTA 830
Query 908 TAAAGAGGTTGCTGCTATCTTCTTCATAGGAACAACAAAATCACATCCTCCAATACCTGA 967
||||||| |||||||||| ||| ||| ||||| || || || ||||||||||| |||||
Sbjct 831 TAAAGAGATTGCTGCTATTTTCCACATTGGAACGACGAAGTCGCATCCTCCAATCCCTGA 890
Query 968 TACTCTCTCCTCTGATGCAAAAGATTTTCTGCTCAAGTGTCTGCAGGAGGTACCAAATCT 1027
| ||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 891 CAATCTCTCCTCTGATGCGAAAGATTTTTTGCTCAAGTGTCTGCAGCAGGAACCAAATCT 950
Query 1028 GCGGCCAACCGCATCTGAGCTACTAAAGCATCCTTTTGTTATGGGGAAACACAAGGAGTC 1087
|||||||||||| |||||||| ||||||||||| ||||||| ||| ||||| ||||| ||
Sbjct 951 GCGGCCAACCGCTTCTGAGCTGCTAAAGCATCCATTTGTTACGGGCAAACAGAAGGAATC 1010
Query 1088 TGCTTCTACT-GATCTTGGTTCTGTCCTGAACAAT-CTTAGCACTCCACTACCGTTAC-A 1144
|||||||| | ||||||| ||| ||| || ||||| | | ||| | | |||| | | |
Sbjct 1011 TGCTTCTA-TAGATCTTGCTTCAGTCATGGACAATTCAT-GCAGTACTTTACCATC-CGA 1067
Query 1145 GATAA-ATAACACCAAGAGC-ACTCCAGAT-TCTACTTGCGACGATGTAGGTGACATGTG 1201
| | | | |||| |||||| | || | || ||||| | || |||||||| ||||| ||
Sbjct 1068 GTTGACA-AACATTAAGAGCTA-TCAA-ATGTCTACAAGTGAAGATGTAGGAGACATCTG 1124
Query 1202 TAACTTTGGCAGTTTGAATTATTCACTTG-TAGATCC-TGTGAAATCAATCCAAAACAAA 1259
|||||| || ||| ||| || | |||||| | ||| || ||| ||||||||||| ||
Sbjct 1125 TAACTTGGGTAGTCTGACTTGTACACTTGCTT--TCCCTGAGAATTCAATCCAAAATAAC 1182
Query 1260 AATTTATGGC--AAC---AA-AATGA-TA--ATGGAGG-TGATGAAGAC---GATATGTG 1306
| ||| || | || || || | || ||| ||| |||||| || ||||||||
Sbjct 1183 AGTTTGTGTCTGAAAGGTAATAACGGGTATGATG-AGGATGATGATGATAATGATATGTG 1241
Query 1307 TTTGATAGATGATGAGAATTTCTTGACATTTGACGGAGAAA-TGAGTTCTACCCTTGA-A 1364
|||| | || |||||| |||||||||||| | | ||| ||| | | ||| ||||| |
Sbjct 1242 TTTGTTTGACGATGAGGATTTCTTGACATATAATGGAAAAACTT-GCCCTAGTCTTGACA 1300
Query 1365 A-AAGATTGTCAT-CTGAAGAAGAGCTGTGATGAC-ATAAGTGATATGTCC-AT-TGCTT 1419
| || | || || | || ||||||||||||| || || ||||| || || || | ||
Sbjct 1301 ATAATACTG--ATGC-GAGGAAGAGCTGTGAT-ACCATGAGTGAGATCTCTGATAT--TT 1354
Query 1420 TGAAGTCCAAATTTGACGAAAGTCCTGGTAATGGAGAGAA-AGAGTCTACAA-TGAGCAT 1477
|||||| || |||||||||| | |||| |||||||| || |||| | | || | || ||
Sbjct 1355 TGAAGTGTAACTTTGACGAAAATTCTGGAAATGGAGA-AACAGAGACGAAAAAT-AGTAT 1412
Query 1478 GGAATGT-GACCAACCTTCATACTCAGAGGATGATGATGAGCTGACCGAGTCAAAAATTA 1536
|||| || ||||| || || |||||||||||||| ||||| |||||||||||||||| |
Sbjct 1413 GGAA-GTTGACCATCCATCGTACTCAGAGGATGAAAATGAGTTGACCGAGTCAAAAATCA 1471
Query 1537 AAGCTTTCTTAGATGAGAAGGCTGCAGATCTAAAGAAGTTACAGACTCCTCTCTATGAAG 1596
|||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1472 AAGCTTTCTTAGATGACAAGGCTGCAGATTTAAAGAAGTTACAGACGCCTCTCTATGAAG 1531
Query 1597 AATTCTACAATAGTTTGATCACATTCTCTCCCAGT-TGTATGGAGAGTAATTT-AAGTAA 1654
|||||||||| || ||||||||| |||||||| | || ||||||||||| | || |||
Sbjct 1532 AATTCTACAACGGTATGATCACATGCTCTCCCA-TCTGCATGGAGAGTAACATCAA-TAA 1589
Query 1655 CAGTAAA--AGAG-AGGACACTGCTCGTGGTTTCCTGAAACTGCCTCCAAAAAGCAGGTC 1711
|| |||| |||| ||| ||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 1590 CAATAAACCAGAGGAGG-CAC--CTCGTGGTTTCTTGAAACTGCCTCCAAAAAGTAGGTC 1646
Query 1712 ACCGAGTCGGGGCCCTCTTGGTGGTTCACCTTCAAGA-GCAACAGACGCAAC-TAGTTGT 1769
|||| || ||||| | ||||| |||||||||| ||| | |||||| ||| | | |||||
Sbjct 1647 TCCGATTCAGGGCCATATTGGTCGTTCACCTTCTAGAAG-AACAGATGCAGCCT-GTTGT 1704
Query 1770 TCCAAGAGCCCAGGAAGTGG 1789
||||||||||||| ||||||
Sbjct 1705 TCCAAGAGCCCAGAAAGTGG 1724
Score = 200 bits (108), Expect = 4e-50
Identities = 153/175 (87%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 1902 AGCCAGTGTGTTGCTTTGTCAGAGATAGAGAAGAAGTGGAAGGAAGAGCTTGATCAAGAA 1961
|||||| |||| || | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1786 AGCCAGAGTGTCGCGCTCTCAGAGATAGAGAGGAAGTGGAAGGAAGAGCTTGATCAAGAA 1845
Query 1962 CTGGAAAGAAAGCGACA-AGAAATCATGCGCCAAGCAGGGTTGGGATCATCCCCAAGAGA 2020
|| |||||||||||| | ||| || | ||| ||||||||| ||||||||||||| |||||
Sbjct 1846 CTTGAAAGAAAGCGA-AGAGAGATTACGCGGCAAGCAGGGATGGGATCATCCCCGAGAGA 1904
Query 2021 CAGAGGCATGAGCCGACAGAGAGAGAAGTCGAGGTTTGCATCACCAGGAAAATGA 2075
||| || |||||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct 1905 TAGAAGCTTGAGCCGACATAGAGAGAAGTCAAGGTTTGCATCTCCAGGCAAATGA 1959
> Ahg359650 jgi|Araly1|359650|fgenesh1_pg.C_scaffold_603000001
Length=627
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 424 AGGAGCTTGAAGAAGAAGTTAAGCTTCTTAAAAATCTCTCCCATCCTAATATAGTT 479
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 35 AGGAGCTTGAAGAAGAAGTTAAGCTTCTCAAAAATCTCTCCCATCCAAATATAGTT 90
> Ahg355279 jgi|Araly1|355279|fgenesh1_pg.C_scaffold_7002452
Length=720
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 424 AGGAGCTTGAAGAAGAAGTTAAGCTTCTTAAAAATCTCTCCCATCCTAATATAGTT 479
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 35 AGGAGCTTGAAGAAGAAGTTAAGCTTCTCAAAAATCTCTCCCATCCAAATATAGTT 90
> Ahg339408 jgi|Araly1|339408|fgenesh1_pg.C_scaffold_2001507
Length=507
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 424 AGGAGCTTGAAGAAGAAGTTAAGCTTCTTAAAAATCTCTCCCATCCTAATATAGTT 479
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 35 AGGAGCTTGAAGAAGAAGTTAAGCTTCTCAAAAATCTCTCCCATCCAAATATAGTT 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85474509780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5