BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09020.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470981 jgi|Araly1|470981|fgenesh2_kg.1__935__AT1G09020.1 3397 0.0
> Ahg470981 jgi|Araly1|470981|fgenesh2_kg.1__935__AT1G09020.1
Length=2240
Score = 3397 bits (1839), Expect = 0.0
Identities = 2164/2306 (94%), Gaps = 81/2306 (4%)
Strand=Plus/Plus
Query 7 TTCTTCACCTTGAAAGACCATTAACATCATTCCTTGCCCAGATCCAAACAATGCCATCTC 66
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2 TTCTTCACCTTGAAAGACCATTAACATCATTCCTTCCCCAGATCCAAACAATGCCATCTC 61
Query 67 CACTCTCTCTATTTAGGGTTCTCTCCAACTTTTCAAATCCCTAATTCTTGCTCCCTCCCT 126
||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 62 CACTCTCTCTATTTAGGGTTCTCTCCATCTTTTCAAATCCCTAATTCTTG----CT-CCT 116
Query 127 TCAATCAATTCCGATCATCATCGAGGTCTCTCTACTCCCCGAATTTAAAGATCAG-AGCC 185
|| | | | |||||| | | ||||||||||||||| |||||||||||||| ||||
Sbjct 117 TC---C---T-C-ATCATC--C-ACGTCTCTCTACTCCCCCAATTTAAAGATCAGAAGCC 165
Query 186 GCGACTTCCTCTGCCTTCTTTTCCTCGGAATTTTTCAGCTACGTTTTCCAGGTGGTGTGT 245
|||| |||||||| | ||||||||||||| | || | ||| |||||| |||||
Sbjct 166 GCGAATTCCTCTGGCAACTTTTCCTCGGAA----T-AG----GGTTT-CAGGTGTTGTGT 215
Query 246 ATTGTCAATCAGTTGACCTTTGCTTTTGTAGCCAGATCGTTCGTGCTTTGAG--TTTAGG 303
|||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 216 ATTGTC-ATCAGTTGACCTTTGCTTTTATAGCCAGATCGTTCGTGCTTTGAGTTTTTAGG 274
Query 304 GCTCTTTTACAAGGTTTCGTGTTGGTGGAATTTC-TCTACCTAGGTTTGGGGGAAGAGTT 362
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 275 GCTCTTTTACAAGGTTTCGTGTTGGTGAAATTTCTTCTACCTAGG-TTGGGGGAAGAGTT 333
Query 363 CAGTAATTTCGTTGTAGATCGTGATTTGGGCTTTTAGGGTTTCGGTTTACTGGTTGCTGG 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 334 GAGTAATTTCGTTGTAGATCGTGATTTGGGCTTTTAGGGTTTCGG-TTACTGGTGGCTGG 392
Query 423 AATTTATGGTAGCGTTATTGAATTCGGACTCTCTGCATGTGTAAGCGTTGAAGTTTG-AA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 393 AATTTATGGTAGCGTTATTGAATTCGGACTCTCTGCATGTGTAAGCGTTGAAG-TTGCAA 451
Query 482 GTTTCACCGGGTTTTGTTTCTTCTGCTGAAGAGTC-GAGATTATTT-TACGCATTAAGAA 539
||||||||||||||||||||||||||| ||||||| |||| |||| |||||||| ||||
Sbjct 452 GTTTCACCGGGTTTTGTTTCTTCTGCTCAAGAGTCTGAGA-CATTTGTACGCATTTAGAA 510
Query 540 TCGATTCAGAAGG-TTTTTAGGAATTAGTTTCTGTGGATTGTAACTATAT-AACTACTGG 597
|||||| || ||| |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 511 TCGATTGAG-AGGATTTTTAGGAATTAGTTTCTGTGGATTGTAACTATATAAAC-ACTGG 568
Query 598 GAGGGGATGTTTGGTTCTACATTGGATAGCAGCCGTGGAAACAGCGCTGCCTCAGGGCAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GAGGGGATGTTTGGTTCTACATTGGATAGCAGCCGTGGAAACAGCGCTGCCTCAGGGCAG 628
Query 658 CTTCTTACTCCGACACGCTTCGTGTGGCCTTATGGAGGTAGAAGAGTCTTCCTAAGCGGA 717
|||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 629 CTTCTTACTCCGACCCGCTTCGTGTGGCCTTATGGAGGTCGAAGGGTCTTCCTAAGCGGA 688
Query 718 TCTTTCACCAGGTGGACAGAGCATGTGCCAATGTCACCGCTCGAGGGCTGCCCTACTGTT 777
||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct 689 TCTTTCACCAGGTGGACTGAACATGTGCCAATGTCACCGCTTGAGGGCTGCCCGACTGTT 748
Query 778 TTTCAAGTCATTTGCAACTTGACGCCAGGATATCATCAGTATAAGTTTTTTGTTGATGGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TTTCAAGTCATTTGCAACTTGACGCCAGGATATCATCAGTATAAGTTTTTTGTTGATGGG 808
Query 838 GAATGGCGGCACGATGAGCACCAACCATTTGTAAGCGGAAATGGTGGAGTAGTGAATACA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GAATGGCGGCACGATGAGCACCAACCATTTGTAAGCGGAAATGGTGGAGTAGTGAATACA 868
Query 898 ATATTTATAACTGGGCCAGATATGGTTCCTGCTGGTTTTAGCCCAGAGACACTGGGCCGG 957
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 869 ATATTTATAACTGGACCCGATATGGTTCCTGCTGGTTTTAGCCCAGAGACACTCGGCCGG 928
Query 958 TCGAATATGGATGTGGATGATGTCTTCCTGCGAACGGCTGACCCGTCCCAGGAAGCTGTT 1017
||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 929 TCGAATATGGATGTGGATGATGTCTTCCTGCGAACGGCTGA------CC------C-G-T 974
Query 1018 CCTAGGATGTCGGGGGTTGATTTGGAGCTTTCTCGTCACCGCATATCGGTTTTATTGTCA 1077
| | ||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 975 -C----A-----GGGGTTGATTTGGAGGTTTCTCGTCACCGTATATCTGTTTTATTGTCA 1024
Query 1078 ACCCGCACTGCATATGAGCTGCTCCCAGAATCGGGCAAGGTTATTGCATTGGATGTTAAT 1137
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 ACCCGTACTGCATATGAGCTGCTCCCAGAATCGGGCAAGGTTATTGCATTGGATGTTAAT 1084
Query 1138 TTGCCAGTGAAGCAAGCATTCCATATACTCTATGAGCAGGGAATCCCTTTGGCTCCTCTT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTGCCAGTGAAGCAAGCATTCCATATACTCTATGAGCAGGGAATCCCTTTGGCTCCTCTT 1144
Query 1198 TGGGACTTTGGAAAAGGCCAATTTGTTGGAGTTCTTGGTCCACTAGACTTCATTCTAATA 1257
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TGGGACTTTGGTAAAGGTCAATTTGTTGGAGTTCTTGGTCCACTAGACTTCATTCTAATA 1204
Query 1258 CTGAGAGAGCTTGGAACTCATGGATCAAACTTGACAGAGGAAGAGCTTGAGACGCACACA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CTGAGAGAGCTTGGAACTCATGGATCAAACTTGACAGAGGAAGAGCTTGAGACGCACACA 1264
Query 1318 ATAGCAGCCTGGAAAGAGGGGAAGGCTCATATTAGCCGGCAATATGATGGAAGTGGGAGA 1377
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1265 ATAGCAGCCTGGAAAGAGGGGAAGGCTCATATTAGCCGACAATATGATGGAAGTGGGAGA 1324
Query 1378 CCATATCCTAGGCCACTTGTTCAGGTTGGACCCTATGATAATCTGAAAGACGTTGCCCTG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CCATATCCTAGGCCACTTGTTCAGGTTGGACCCTATGATAATCTGAAAGACGTTGCCCTG 1384
Query 1438 AAAATTTTGCAAAACAAGGTGGCAGCTGTTCCGGTTATATATTCTTCTTTGCAGGATGGT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 AAAATTTTGCAAAACAAGGTGGCAGCTGTTCCGGTTATATATTCTTCTTTGCAGGATGGT 1444
Query 1498 TCATATCCGCAGTTACTGCATCTTGCTTCGCTATCAGGCATATTAAAATGTATATGCAGA 1557
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1445 TCATATCCGCAGTTACTGCATCTTGCTTCGCTATCAGGCATCTTAAAATGTATATGCAGA 1504
Query 1558 TACTTTAGACATTCGTCTAGCTCTTTACCTATCCTTCAGCAACCCATTTGTTCAATTCCC 1617
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1505 TACTTTAGACATTCGTCTAGCTCTTTACCAATCCTTCAGCAACCCATTTGTTCAATTCCC 1564
Query 1618 CTGGGTACGTGGGTCCCTAGAATCGGAGAATCAAGTAGCAAACCTCTCGCTACATTGAGA 1677
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 TTGGGTACTTGGGTCCCTAGAATCGGAGAATCAAGTAGCAAACCTCTCGCTACATTGAGA 1624
Query 1678 CCTCACGCCTCTTTGGGTTCTGCGCTCGCATTATTAGTTCAAGCTGAAGTCAGTTCAATT 1737
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 CCTCATGCCTCTTTGGGTTCTGCGCTCGCATTATTAGTTCAAGCTGAAGTCAGTTCAATT 1684
Query 1738 CCCGTAGTGGATGACAACGACTCGCTTATTGACATATACTCTCGAAGTGATATAACTGCT 1797
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CCCGTAGTGGATGATAATGACTCGCTTATTGACATATACTCTCGAAGTGATATAACTGCT 1744
Query 1798 CTGGCTAAAGACAAGGCATACGCACAGATTCATCTTGATGACATGACAGTTCACCAGGCG 1857
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1745 CTGGCTAAAGATAAAGCATACGCACAGATTCATCTTGATGACATGACGGTTCACCAGGCG 1804
Query 1858 CTACAGTTGGGGCAAGATGCGAGCCCGCCTTATGGAATCTTCAACGGGCAGAGATGTCAC 1917
|| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1805 CTGCAGTTGGGGCAAGATGCAAGTCCACCTTATGGAATCTTCAACGGGCAGAGATGTCAC 1864
Query 1918 ATGTGCTTGCGCTCAGACTCTCTTGTGAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTA 1977
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 ATGTGCTTGCGCTCGGACTCTCTTGTGAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTA 1924
Query 1978 AGGAGGCTGGTGATAGTGGAAGCAGGGAGCAAACGTGTTGAAGGTATCATTTCACTGAGC 2037
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1925 AGGAGGCTGGTGATAGTGGAAGCAGGTAGCAAACGTGTGGAAGGTATCATTTCATTGAGC 1984
Query 2038 GATGTTTTCCAATTCCTGCTCGGTCTTTGACTCCCACAGCAAAACAACCTCC-C--CAAC 2094
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1985 GATGTTTTCCAATTCCTGCTCGGTCTTTGACTCCCACAGCAAAACAACCTCCTCATCAAA 2044
Query 2095 CTCTTTTTCTCATTTCCCCTCAATCAAAACTACCCAACAATTTGCTTCtttttttttttt 2154
|||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 2045 CTCTTTTTCTCAATTCC--TCAATCAAAACTACCCAACAATTTGCTTCTTCTTCTTTTTA 2102
Query 2155 tttttttttCTTCTTGCAAGGAATTTGTAAATTTGCTACGAACCTCTT-T-CATCATTGT 2212
| ||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 2103 T--------CTTCTTGCAAGGAATTTGTAAATTTGCTACGAACCTCTTCTTCTTCATTGT 2154
Query 2213 TTTCTTATTATTTTTGTTGTTTTAGTTGAACGGGTTTCCATTCTTGTGAAGATATTGGCT 2272
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2155 TTTCTTATTATTTTTGTTGTTTTAGTTGAACAAGTTTCCATTCTTGTGAAGATATTGGCT 2214
Query 2273 ACCGGAATCTTTTACTAGTAGCTTCC 2298
||||||||||||||||||||||||||
Sbjct 2215 ACCGGAATCTTTTACTAGTAGCTTCC 2240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5