BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09026.1

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919650 jgi|Araly1|919650|scaffold_100931.1                        230    3e-60


> Ahg919650 jgi|Araly1|919650|scaffold_100931.1
Length=203

 Score =  230 bits (124),  Expect = 3e-60
 Identities = 132/136 (97%), Gaps = 0/136 (0%)
 Strand=Plus/Plus

Query  19   TCTTTCTCTTTGTCCTTCGCAATGGGTACATCAGATGTGGGTTGTACTGGTTGTTACCTT  78
            |||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  1    TCTTTCACTTTGTCCTTCGCAATGGGTACATCGGATGTGGGTTGTACTTGTTGTTACCTT  60

Query  79   AAAATATTCGCGCTCATGGTTCCCGAGGCATCGCTGCCTGCCTGTGCAGGAGCTCAATGC  138
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   AAAATATTCGCGCTCATGGTTCCCGAGGCATCGCTGCCTGCTTGTGCAGGAGCTCAATGC  120

Query  139  CGCGATTCCATGGTTT  154
            ||||||||||||||||
Sbjct  121  CGCGATTCCATGGTTT  136



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5079038713


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5