BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09030.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919651 jgi|Araly1|919651|scaffold_100932.1                        721    0.0  


> Ahg919651 jgi|Araly1|919651|scaffold_100932.1
Length=460

 Score =  721 bits (390),  Expect = 0.0
 Identities = 410/420 (98%), Gaps = 0/420 (0%)
 Strand=Plus/Plus

Query  1    ATGACAGACGAAGATAGATTGTTGCCAATAGCCAATGTAGGGAGACTTATGAAGCAAATC  60
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGACAGACGAAGATAGATTGTTACCAATAGCCAATGTAGGGAGACTTATGAAGCAAATC  80

Query  61   CTACCATCAAATGCAAAGATCTCAAAAGAAGCAAAACAAACAGTTCAAGAATGTGCAACA  120
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  81   CTACCATCAAATGCAAAGATCTCAAAAGAAGCAAAACAAACAGTTCAAGAGTGTGCAACA  140

Query  121  GAGTTCATAAGCTTTGTTACATGCGAAGCATCAGAGAAGTGCCACAGGGAGAATCGGAAG  180
            ||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct  141  GAGTTCATAAGCTTTGTTACATGCGAAGCCTCGGACAAGTGCCACAGGGAGAATCGAAAG  200

Query  181  ACGGTGAATGGAGACGACATCTGGTGGGCTCTCAGCACTCTCGGCCTCGATAACTATGCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  ACGGTGAATGGAGACGACATCTGGTGGGCTCTCAGCACTCTCGGCCTCGATAACTATGCT  260

Query  241  GACGCCGTGGGTAGGCATCTTCACAAGTACCGTGAAGCCGAGAGAGAAAGAACTGAGCAC  300
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  261  GACGCCGTGGGTAGGCATCTTCACAAGTACCGTGAAGCCGAGCGAGAAAGAACTGAGCAC  320

Query  301  AACAAAGGTAGCAATGATAGTGGGAATGAGAAAGAAACCAACACTAGAAGTGATGTACAG  360
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  321  AACAAAGGTAGCAATGATAGTGGGAATGAGAAAGAACCCAACACTAGAAGTGATGTACAC  380

Query  361  AACCAATCGACAAAATTTATTAGAGTTGTTGAGAAGGGAAGCAGCTCCTCGGCCCGTTGA  420
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  381  AACCAATCGACAAAATTTATTAGAGTTGTTGAGAAGGGAAGCAGCTCCTCAGCCCGTTGA  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5