BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09040.1
Length=3095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470983 jgi|Araly1|470983|fgenesh2_kg.1__937__AT1G09040.1 4348 0.0
Ahg474781 jgi|Araly1|474781|fgenesh2_kg.1__4735__AT1G55050.2 472 9e-132
> Ahg470983 jgi|Araly1|470983|fgenesh2_kg.1__937__AT1G09040.1
Length=3057
Score = 4348 bits (2354), Expect = 0.0
Identities = 2767/2968 (93%), Gaps = 21/2968 (1%)
Strand=Plus/Plus
Query 1 GTGTTGAAAGAGCGACCAGTGCTCTTTCTCTCTATCCACAAACACGAACAATTCTTCGTT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTTGAAAGAGCGACCAGTGCTGTTTCTCTCTATCCACAAACACGAACAATTCTTCGTT 60
Query 61 GTCTTTGTTCCTGTTGCCAACTCCAGATTCTCAAAGTGCCACAATCTCTAACATTGCAAA 120
| ||||||| ||| |||||||||||||||||| |||| ||||||||| |||||||| ||
Sbjct 61 TTGTTTGTTCTTGTAGCCAACTCCAGATTCTCACAGTGTCACAATCTCCAACATTGCGAA 120
Query 121 GTTGAGACATCTCATAAACTAACTCAGGTTTCACTACGTTGAGGATGGTTCTTCTGATGG 180
|||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 121 GTTGAGACATCTCATAAACTAAGTCAGGTTTCACTACGCTGAGCATGGTTCTTCTGATGG 180
Query 181 GTGCCGAGAATAATCTTATGGAAGAAACAACAGCTGTTACCGAAGAAGATTCCTATGATG 240
|| || |||||||||||||||| | ||||||||||| | |||||||| |||||||
Sbjct 181 ATGGAGAAAATAATCTTATGGAAG--A-AACAGCTGTTATC---GAAGATTCATATGATG 234
Query 241 ATGAGTTTCCCTGCGGAGATCCACAAGTTGAGCCTCGTGTTGGAGATGAATTTCAGGTCG 300
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 ATGAATTTGCCTGCGGAGATCCACAAGTTGAGCCTCGTGTTGGAGATGAATTTCAAGTCG 294
Query 301 ACATTCCTCCTATGATGTCTGCAACCAAGCGTGCTGTGTTTCTTTCGACTCCTGTTGCTT 360
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 AGATTCCTCCTATGATGTCTGCATCCAAGCGTGCTGTGTTTCTTTCGACTCCTGTTGCTT 354
Query 361 TGGATGATTCGTCATATTCTTTTCTCATCGGACTACCTGTCCAAGTCATGTGGATAGACA 420
|||||||||| || |||||||||||| | ||||||||||| ||||| |||||||||||||
Sbjct 355 TGGATGATTCTTCGTATTCTTTTCTCGTTGGACTACCTGTTCAAGTGATGTGGATAGACA 414
Query 421 AACATAGAAGAGGGCAAGGAAATGGAGATGACAATGTTGACATGAACCAGTCCTTGAAGT 480
||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 415 AACATAGAAGAGGACAAGGAAATGGAGATGATAATGTTGACATGAACCAATCTTTGAAAT 474
Query 481 CTTTAAGAGCCaaaaaaaGCCGTTGCTCTGCCAAGATCAGAGGAAAGAGTGACAAGAATT 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 CTTTAAGAGCCAAAAAAAGCCGTTGCTCTGCCAATATCAGAGGAAAGAGTGACAAGAATT 534
Query 541 CGGAAACCAAGAAGCAAAGATCGAATCTTGAGGCTGTTCCTGTGATACCGTCCAGTTCTT 600
||| ||||||| ||||||| |||||||||||||||||||| |||||| |||||||| |
Sbjct 535 CGGCCCCCAAGAATCAAAGATTGAATCTTGAGGCTGTTCCTGCGATACCATCCAGTTCCT 594
Query 601 GGGAAGATTTGGAGGTGGCTAGCTTTGTTCTTGGTCTGTATACATTTGGGAAGAACTTTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGGAAGATTTGGAGGTGGCTAGCTTTGTTCTTGGTCTGTATACATTTGGGAAGAACTTTA 654
Query 661 CTCAGGTGAAGAATTTCATGGAGAACAAAGGAATAGGAGAGATCATGTTGTTTTACTATG 720
||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 655 CTCAGGTGAAGAATTTCATGGAGAACAAAGGAATAGGAGAGGTAATGTTTTTTTACTATG 714
Query 721 GGAAGTTCTACAATTCTGCAAAGTACCACAGTTGGTCTGAATCCCGAAAGAAGCGCAACC 780
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 715 GGAAGTTCTACAATTCTGCAAAGTACCACAGTTGGTCTGAATCCCGCAAGAAGCGCAACC 774
Query 781 GCAAATGTGTATTTGGAAGAACGCTCTATTCAGGTTGGAGGCAACAACAATTGTTAACCC 840
| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 775 GGAAATGTGTATATGGAAGAAAGCTCTATTCAGGTTGGAGGCAACAACAGTTGTTAACCC 834
Query 841 GTTTGATGCCTTCTATTCCTGATGAACCTCAGAAACAGATACTTGTGGATGTCTCAAAGT 900
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 835 GTTTGATGCCTTCTATTCCTGATGAACCTCAGAAACAGATGCTCGTGGATGTCTCAAAGT 894
Query 901 CATTTGCTGAAGGTACTATCACTCTAGAGAAATACGTAAGTGCAGTGAAGAATCTTGTGG 960
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 895 CATTTGCTGAAGGTAATATCACTCTGGAGAAATACGTAAGCGCAGTGAAGAATCTTGTGG 954
Query 961 GTCTCAGGCTTCTGGTAGACGCTGTGGCGATTGGTAAAGAAAAAGAAGATCTCACGGTTC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTCTCAGGCTTCTGGTAGACGCTGTGGCGATTGGTAAAGAAAAAGAAGATCTCACGGTTC 1014
Query 1021 CTACATCAACACCAATGAAGACCAAACCATGGTTCACTGTTTCTTCAAAATCTTCTTTGG 1080
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1015 CTACATCAGCACCAATGAAGACCAAACCATGGTTCACTGTTTCTTCAAAACCTTCTTCGG 1074
Query 1081 TCCCTGGAGAAGGGGATTACAATTCCCTCACATCGGCTGGCATAATAAATCAGTTAACTG 1140
|||| |||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1075 TCCCGGGAGTAGGGGATTACAATTCACTCACATCCGCTGGCATAATAAATCAATTAACTG 1134
Query 1141 GCTGTTCTCGTCTGAGCAAAGCCCGTTGCAATGATATATTCTGGGGCGCTGTATGGCCGC 1200
||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1135 GCTGTTCACGTCTGAGCAAAGCCCGTTGCAATGATATATTCTGGGACGCTATATGGCCGC 1194
Query 1201 GTTTGCTAGCCAGAGGATGGCATTCACAGCAGCCAGAGGACCGTGGCTATTTCAAATCTA 1260
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1195 GTTTGCTAGCCAGAGGATGGCGTTCACAGCAGCCCGAGGACCGTGGCTATTTCAAATCTA 1254
Query 1261 AGGATTACATTGTTTTCATTGTCCCTGGCGTGAAAAAGTTTTCAAGACAGGAGCTTGTCA 1320
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1255 AGGATTATATTGTTTTCATTGTCCCTGGCGTGAAAAAGTTTTCAAGACAGAAGCTTGTCA 1314
Query 1321 AAGGAGATCACTACTTTGATTCCGTCAGTGATATTCTAACAAAGGTTGTGTCAGAGCCTG 1380
|||| || || ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1315 AAGGCGAACATTACTTTGATTCTGTCAGTGATATTCTAACAAAGGTTGTGTCGGAGCCTG 1374
Query 1381 AACTTCTTGAGAATGAAACAGGAGGAGTTGCTGCAGAGCTTTCTTCTGACAAGTCAGATG 1440
||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 1375 AACTTCTTGAGTATGAAACAGGAGGAGTTGTTGCAGAGAACTCTTCTGACCAGTCAGATG 1434
Query 1441 AAGAGTCTGTCCC-GTCTGATAGTCTAAGACACCGTTACCTCAGGTCTCCATGTTCTAAC 1499
|||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1435 AAGAGTCT-TCCCCGTCTGATAGTCAAAGACACCGTTACCTCAAGTCTCCATGTTCTAAC 1493
Query 1500 CGTGGAACTCTGGGAATGAAATTCACTGTTGTGGACACTAGTTTGGCTACTGGAGGAAAG 1559
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1494 CGTGGAACTCTGGGAATGAAATTCACTGTTGTGGACACTAGCTTCGCTGCTGGAGGAAAG 1553
Query 1560 TTGTGTGATTTACGGAATCTGAATGCAGAGTGTCTAGTAGTTTCTGAGCCAAACGTTCGT 1619
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 1554 TTGTGTGATTTACGGAATCTGAATGCAGAGTCTCTAGTAGTTTCTGAGCCAAAGGCTCAT 1613
Query 1620 CTAGAAGTTAAAGATTCTCCTGTGCTTAAAAATTCTCTGGACAGTCAGAATGTGGAAAAG 1679
|| | || |||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1614 CTTGGAGCTAAAGATTCTTCTGCGCTTAAAAATTCCCTGGACAGTCAGAATGTGGAAAAG 1673
Query 1680 TCGCAAGTGAGGCCTCTGGATGCCAAGAACCAAGTGGATGACCCAATGCGATTCACGATT 1739
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TCTCAAGTGAGGCCTCTGGATGCCAAGAACCAAGTGGATGACCCAATGCGATTCACGATT 1733
Query 1740 ATTGATACGAGTGTAGACCACTGCGAAAAATCATCTGGGTTTAGGAGATGGAGATATTTA 1799
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1734 ATTGATACGAGTGTAGACCACTGCGAAAAATCATCTGGGTTTAGAAGATGGAGATATTTA 1793
Query 1800 CCAAGTGATGAAACAAAAAGGGGTCATGTAGGGGCTGATTCTGGTATAAAGGAAGAGAAG 1859
||||||||||| ||||||| |||| ||| |||| |||| ||||||||||||| ||||||
Sbjct 1794 CCAAGTGATGACACAAAAAAGGGTTGTGTGGGGGGTGATGCTGGTATAAAGGAGGAGAAG 1853
Query 1860 ACTTTGGAGAAGGTTAAGGATCCATCAAAGAGGGTTATTAAGCATCGGTCTACCCCTCGA 1919
| ||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 1854 AATTTGGAGAAGGCGAAGGATCCATCAAAGAGGGTGATTAAGCTTAGGTCTACCCCTCGA 1913
Query 1920 GCAGAAACTAATTATCATGCTGTAAATTCTGCACCATATTTGAAACGCAGACGGCTCAGT 1979
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GCAGAAACAAATTATCATTCAGTAAATTCTGCACCATATTTGAAACGCAGACGGCTCAGT 1973
Query 1980 GCTTGCATTTCCAGAGAAAGTCCAGTGTCCAAACATATACCAGGTGATGATGACACAAAA 2039
||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1974 GCTTGCATTTCAAGAGAAAGTCCAGTGTTCAAACATTTACCAGGTGATGATGACACAAAA 2033
Query 2040 ATGACTGTTTGTCTTGAATCAGAGCAGCAAAGTATATGTGTGGTCCAACAACAAACTAGC 2099
| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2034 AGGACTATTTGTCTTGAATCAGAGCAGCAAAGTATATGTGCAGTCCAACACCAAACTAGC 2093
Query 2100 ACTTGTGAAGAGATGAATCAGGATAAAG-AGACTGTGCCGTTGGTTGAGCATATGAAATT 2158
||| ||||||||||||||| ||| |||| ||||||||| |||||||||||||||||| ||
Sbjct 2094 ACTGGTGAAGAGATGAATCCGGA-AAAGGAGACTGTGCTGTTGGTTGAGCATATGAACTT 2152
Query 2159 AAAGTCTGATCAATCAAAAAAGACTGGAACTGGGCCATCATCTTTGCTTGTTGAGATTCA 2218
|||||||||||||||||||||||||||||||||||| || |||| ||||||| |||||||
Sbjct 2153 AAAGTCTGATCAATCAAAAAAGACTGGAACTGGGCCGTCTTCTTCGCTTGTTAAGATTCA 2212
Query 2219 AGAAACGACAGAGATTGAACCAAGCGGGTTAAATTCCAACACTGGTGTAGACAAGAACTG 2278
|||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||
Sbjct 2213 AGAAACGACAGAGATTGAACCAAGTGGGTTAAATTCCATCTCCGGTGTAGACAAGAACTG 2272
Query 2279 TTCTCCAGAGAAAATAAGTACAT-CCCATGAACAAAAACCAAATGGGCTTTGTTCAGTGT 2337
|||||||| ||| ||||| || | |||||||||||||| |||||| ||| ||||||||||
Sbjct 2273 TTCTCCAGGGAAGATAAGAAC-TGCCCATGAACAAAAAACAAATGAGCTCTGTTCAGTGT 2331
Query 2338 CAAAGTCGGACAAAAAACGAGCTTCCAATGATCTGGAACAAAAGCAAGCACTTGAGCTTC 2397
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 2332 CAGAGTCGGACAAAAAACGAGCTTCCAATGATCTGGAACAAAAGCAAGCAGTTGATCTCC 2391
Query 2398 CTTCCATTTCAGGCTT-AA-AC-AATAGATCTTCTTCCAATGATCTGGGAACTACTCAAG 2454
||||||||||||||| || || ||| ||||| |||||| ||||||||||||||||||||
Sbjct 2392 CTTCCATTTCAGGCTCGAACACCAATGGATCTCCTTCCAGTGATCTGGGAACTACTCAAG 2451
Query 2455 A-GCTGGGTTCATCTGAACAACAACACGGCCAACAGAATAATACAGATGGTCCTAGAAGA 2513
| | ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2452 AAG-TGGGTTCATCTAAAGAACAACACGACCAACAGGGTAATACAGATGGTCCTAGAAGA 2510
Query 2514 CAGAGCACAAGAAAGAGACCATTGACCACTCGGGCTCTGGAAGCTATGGAATCCGACTTT 2573
||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 2511 CAGAGCACAAGAAAGCGACCATTGACCACTCGGGCTCTGGAAGCTCTGGAGTCCGACTTT 2570
Query 2574 CTTACAACCAAGAGAATGAAAAGCACGACTAAACCAGAACCGAGAAAGCGTGAAAGTTCA 2633
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 2571 CTTACAACCAAGAGAATGAAAAGCACGAGTAAACCAGAACCGAGAAAACGTGAAAGTTCA 2630
Query 2634 ACGAAGAAAAAACGCTCAGCTAAAGCGTGTAACAGAAATGGGAGTGCAGACTTGGAGCAC 2693
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2631 ACGAAGAAAAAGCGCTCAGCTAAAGCATGTAAAAGAAATGGGAGTGCAGACTTGGAGCAC 2690
Query 2694 AGAAGAGAAGATAGAAACATTTTTATATGGAAAGCACCAACAAGTAAGCCCTTGGATCAA 2753
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 2691 AGAAGAGAAGATAGAAGCAGTTTTATAAAGAAAGCACCAACAAGTAAGCCCTTGGATCAA 2750
Query 2754 ATAGAGGATACAAAGCCTCGCTATCTTCTCAATGAAGCAAGAACTGAGAGTAAGACTCTA 2813
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2751 ATAGAGGATTCAAAGCCTAGCTATCTTCTCAATGAAGCAAGAACTGAGAGTAAGGCTCTG 2810
Query 2814 GATAGAATACAGGAGTCAAGGCCGGTCCTAACTGAATACCGTAAGCTTCCCCCGATTGTA 2873
||| || ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 2811 GATCGAGTACAGGAGTCAAGGCCGGTTCTAACTGAATACCGTAAACTTCCACCGATTGTT 2870
Query 2874 TTGAAGCTTCCGTTCAGGCGTGGCTAAGGA--GAAGATTGGACTTAAGTCTGAAAGTTTT 2931
||||||||||| ||||||||||| |||||| ||| || |||||||||||||||||||||
Sbjct 2871 TTGAAGCTTCCATTCAGGCGTGGGTAAGGACTGAA-AT-GGACTTAAGTCTGAAAGTTTT 2928
Query 2932 GATCGCTGGATGTGAGAAGATTGGTCTT 2959
|||||||||||||||||||||||| |||
Sbjct 2929 GATCGCTGGATGTGAGAAGATTGGCCTT 2956
Score = 134 bits (72), Expect = 5e-30
Identities = 94/104 (90%), Gaps = 4/104 (4%)
Strand=Plus/Plus
Query 2992 TTTTACACAAAGGATTTTTTATTCCTCTT-TTATGCTTATTATTTCCATAATTAGGCAGA 3050
||||||||||||| |||||||||| || |||| |||||||||||||| ||||| ||||
Sbjct 2957 TTTTACACAAAGG--GTTTTATTCCT-TTGTTATTCTTATTATTTCCATTATTAGACAGA 3013
Query 3051 AGTAATGTTTCTATTATTGGTTTGCTTTGGAGTTATTTGAAGTA 3094
||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 3014 AGTAATGTTTCTATTATTGGTTTGCTTAGGAATTATTTGAAGTA 3057
> Ahg474781 jgi|Araly1|474781|fgenesh2_kg.1__4735__AT1G55050.2
Length=2935
Score = 472 bits (255), Expect = 9e-132
Identities = 904/1204 (75%), Gaps = 98/1204 (8%)
Strand=Plus/Plus
Query 225 GAAGATTCCTATGATGATGAGTTTCCCTGCGGAGATCC-ACAAGTTGA-GCCTCGTGTTG 282
|||||||| | |||||| || ||| |||||||||||| | ||||||| | ||||||||
Sbjct 143 GAAGATTCTTGTGATGAAGAATTTGTCTGCGGAGATCCGA-AAGTTGATG-TTCGTGTTG 200
Query 283 GAGATGAATTTCAGGTCGACATTCCTCCTATGATGTCTGCAA--CCAAGCGTGCTGTGTT 340
||||||||| |||||| || || ||||||||||| |||| || |||| ||||| | | |
Sbjct 201 GAGATGAATATCAGGTTGAGATACCTCCTATGATCTCTG-AATCCCAA-CGTGCAGCGCT 258
Query 341 TCTTTCGACTCCTGTTGCTTTGGATGATTCGTCATATT-CTTTTCTCATCGGACTACCTG 399
||||| || |||| || | |||||| || | || |||| || | ||||||||||
Sbjct 259 TCTTTTGAATCCT-CTGGACT--CTGATTCCTCTTGTTCCTTTGCT-GTGGGACTACCTG 314
Query 400 TCCAAGTCATGTGGATAG--A-CAAACATAGA-AGAGGGCAAGGAAATGG-AGATGACAA 454
|| |||| |||||||||| | |||| |||| | || | | ||| ||| || ||| ||
Sbjct 315 TCGAAGTAATGTGGATAGACACCAAATGTAGAGATAGAG-ATGGACTTGGAAG-TGATAA 372
Query 455 TGTTGACATGAACCAGTCCT-TGAAGTC-TTTAAGAGCCaaaaaaaGCCGTTGCTCTGCC 512
| ||||||||| | | || | || || |||| | | ||||| | || | | |
Sbjct 373 CATCGACATGAACGAAT-CTCTCAAATCACTTAA-A---ACAAAAA---GAAGC-C-G-C 421
Query 513 AAGATCAGAGGAAAGAGTGACAAGAATTCGGAAACCAAGAAGCAA-AGATCGAATCTTGA 571
||| | || ||||||| ||| ||| | | |||||| | || |||||||||
Sbjct 422 -AGA--GGTGG---GAGTGACGGGAACCCGG-GAGC--TAAGCAACATAT-GAATCTTGA 471
Query 572 GGCTGTTCCTGTGATACCGTCCAGTTCTTGGGAAGATTTGGAGGTGGCTAGCTTTGTTCT 631
| ||| |||| || | | ||||||||||||||||||||||| || | | | ||||||||
Sbjct 472 AGTTGTGCCTGAGAAATCATCCAGTTCTTGGGAAGATTTGGAAGTAGATGGATTTGTTCT 531
Query 632 TGGTCTGTATACATTTGGGAAGAACTTTACTCAGGTGAAGAATTTCATGGAGAACAAAGG 691
||| |||||||||||||||||||||||| |||||||| |||| || | |||| |||||
Sbjct 532 TGGGCTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGTTGTTAGAGAGCAAAGA 591
Query 692 AATAGGAGAGATCA-TGTTGTTTTACTATGGGAAGTTCTAC-AATTCTGC-AAAGTACCA 748
|| |||||| || | | ||||||||||| || ||||| ||| || ||||| ||| ||| |
Sbjct 592 AACAGGAGATAT-ACTTTTGTTTTACTACGGAAAGTTTTACGAA-TCTGCTAAA-TACAA 648
Query 749 CAGTTGGTCTGAA-TCCCGAAAGAAGCGCAACCGCAAATGTGTA-TTTGGAAGAACGCTC 806
| ||||||| || || | |||||||| | | | | ||| || ||||||| ||||
Sbjct 649 AATTTGGTCT-AATTCTCTTAAGAAGCGGAGCAGGAGATGCATACAAGGGAAGAA-GCTC 706
Query 807 TATTCAGGTTGGAGGCAACAACAATTGTTAACCCGTTTGATGC-CTTCTATTCCTGATGA 865
||||||| |||||||| ||| ||||| ||||||| || | | | ||||| |||||
Sbjct 707 TATTCAGATTGGAGGCTACAGTTGTTGTTGTCCCGTTTAATTCGCAAC-ATTCCCGATGA 765
Query 866 ACCTCAGA-AACAGATA-CTTGTGGATGTCTCAAAGTCATTTGCTGAAGGTACTATCACT 923
| || | | |||||| | |||||||||||||||||||||||||||||||| | | ||
Sbjct 766 A-CTGAAAGAACAGA-AGCTTGTGGATGTCTCAAAGTCATTTGCTGAAGGGAAGAAGTCT 823
Query 924 CTAGAGAAATACGT-AAGTGCAGTGAAG-AATCTTGTGGGTCTCAGGCT-TCTGGTAGAC 980
|| ||| ||||| | || || || ||| || || ||||||||| || | ||| ||||
Sbjct 824 CTGGAGGAATACATCAAC-GCGGTTAAGGAA-CTAGTGGGTCTCCGG-TATCTTTTAGAG 880
Query 981 GCTGTGGCGATTGGTAAAGAAAAAGAAGATCTCACGGTTCCT-ACA-TC-AACACC-AAT 1036
||||| || ||||||||||| || |||||||| || || ||| ||| | ||| || ||
Sbjct 881 GCTGTAGCAATTGGTAAAGATAAGGAAGATCTGACAGT-CCTCACAATAGAAC-CCGAA- 937
Query 1037 GAA-GACCAAACCATGGTTCACTGTTTCTTCAAAATCTTCTTTGGTCCCTGGAGAAGGGG 1095
|| | | |||| |||||| || |||||||| ||| | | | ||| |||||
Sbjct 938 -AATG-CAAAACAATGGTTTACAGTTTCTTCTGCGG-TTCCT-G--C--TGGTTTAGGGG 989
Query 1096 ATTACAATTCCCTCACA-TCGGCTGGCATAAT--AAATCAGTTAACTGGCTGTTCTCGTC 1152
| |||| ||| |||||| | | || ||||| ||| | || ||||| ||||| ||||
Sbjct 990 AATACAGTTCACTCACAGTTGAA-GGTATAATCGAAAA-A-TTGACTGGTTGTTCCCGTC 1046
Query 1153 TGAGCAAAGCCCGTTGCAATGATATATTCTGGGGCGCTGTATGGCCGCGTTTGCTAGCC- 1211
||| |||| |||| ||||||||| ||||||| |||||||||||||||||||||| |
Sbjct 1047 TGATAAAAGGTCGTTACAATGATATCTTCTGGGACGCTGTATGGCCGCGTTTGCTA-CAT 1105
Query 1212 AGAGGATGGCATTCACAGCAGCCAGAGGACCGTGGCTATTTCAAATCTAAGGATTACATT 1271
|| || |||| ||| |||||||| ||||||| | || |||| ||||| || |||||
Sbjct 1106 AGGGGGTGGCGTTCTGAGCAGCCAAAGGACCGAAGTTACATCAAGTCTAAAGACCACATT 1165
Query 1272 GTTTTCATTGTCCCTGGCGTGAAA-AAGTTTTCAAGACAGGAG-CTTGTCAAAGGA-GAT 1328
|| ||| | |||||||| || ||| ||||||||||||| ||| ||||| ||| | |||
Sbjct 1166 GTCTTCCTCGTCCCTGGGGT-AAAGAAGTTTTCAAGAC-GGAAACTTGTGAAAC-ATGAT 1222
Query 1329 CACTACTTTGATTCCGTCAGTGATATTCT-AACAAAGGTTGTGTCAGAGCCTGAACTTCT 1387
|| ||||||||||| ||||||| ||||| || ||||||||| || |||||||| |||||
Sbjct 1223 CATTACTTTGATTCTATCAGTGACATTCTCAA-AAAGGTTGTTTCTGAGCCTGAGCTTCT 1281
Query 1388 TGAG 1391
||||
Sbjct 1282 TGAG 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116898961905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5