BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09060.3
Length=3085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470987 jgi|Araly1|470987|fgenesh2_kg.1__941__AT1G09060.2 4521 0.0
> Ahg470987 jgi|Araly1|470987|fgenesh2_kg.1__941__AT1G09060.2
Length=3029
Score = 4521 bits (2448), Expect = 0.0
Identities = 2871/3067 (94%), Gaps = 61/3067 (2%)
Strand=Plus/Plus
Query 10 CTCTGCAATTTCTCTCGACCAAAACCCTAATTTCAGGTTTGGGGTTTTCCTTCTTTCACT 69
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct 16 CTCTGCAATTTCTCTCGTGCAAAACCCTAATTTCAGGTTTTGGGTTTTCCTTCTTT--C- 72
Query 70 TGTTTTGACAATGCAGGTCAATTTTGATGAAACTTGTGATTCAGTGATTAGAATGAATGC 129
|| | |||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 73 -------AC--T----GTCAATTTTGATGAGATTTGTGATTCAGTGATTAGAATGAGTGC 119
Query 130 TAATGAGCAAACTCGATCCGCCAATGGCATTGGCAATGGCAATGGTGAGTCTATTCCCGG 189
| |||||| |||||||| || || ||||||||||||||||||||||| |||
Sbjct 120 TCATGAGCTAACTCGAT---CC----GC-----CAATGGCAATGGTGAGTCTATTCTCGG 167
Query 190 GATTCCAGATGACTTACGGTGCAAGAGATCGGATGGTAAACAGTGGAGATGCACTGCAAT 249
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GATTCCAGATGATTTACGGTGCAAGAGATCGGATGGTAAACAGTGGAGATGCACTGCAAT 227
Query 250 GTCCATGGCTGATAAGACTGTTTGTGAGAAGCACTACATCCAAGCAAAGAAGCGGGCGGC 309
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 228 GTCCATGGCTGATAAGACCGTGTGTGAGAAGCACTACATCCAAGCAAAGAAACGGGCAGC 287
Query 310 TAATTCTGCTTTCAGGGCGAACCAGAAGAAAGCGAAAAGGCGATCATCGTTAGGCGAAAC 369
|||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 288 TAATTCGGCTTTCAGGGCGAACCAGAAGAAAGCGAAACGGAGATCATCATTAGGCGAAAC 347
Query 370 AGATACGTATTCGGAAGGGAAGATGGATGATTTCGAGTTACCAGTCACCAGCATTGACCA 429
|||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 348 AGATACATATTCGGAAGGGAAGATTGATGATTTTGATTTACCAGTCACCAGCATTGACCA 407
Query 430 CTATAATAACGGTCTTGCCTCTGCTTCCAAGAGTAATGGTAGACTAGAGAAGAGACATAA 489
|||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 408 CTATAATAACGGTCTTGCCTCTGCTTCCAAGAACAATGGTAGAATAGACAAGAGACATAA 467
Query 490 TAAAAGCCTGATGCGGTACTCGCCCGAGACACCGATGATGAGGAGTTTCTCTCCACGTGT 549
||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 468 TAAAAGCCTGATGCGGTACTCACCGGAGACACCGATGATGAGGGGTTTCTCTCCACGTGT 527
Query 550 TGCAGTGGATTTGAATGATGACTTGGGTAGAGATGTTGTAATGTTTGAAGAGGGCTACAG 609
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TGCAGTGGATTTGAACGATGACTTGGGTAGAGATGTTGTAATGTTTGAAGAGGGCTACAG 587
Query 610 ATCTTATAGGACACCACCATCTGTTGCTGTTATGGATCCGA-CACGAAACAGATCACACC 668
||| |||||||||||||||||||||||||| |||||||| | |||| |||||||||||||
Sbjct 588 ATCGTATAGGACACCACCATCTGTTGCTGTAATGGATCC-ATCACGCAACAGATCACACC 646
Query 669 AAAGCACCAGTCCTATGGAATACTCAGCAGCAAGCACAGATGTGTCTGCAGAGTCTTTGG 728
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AAAGCACGAGTCCTATGGAATACTCAGCAGCAAGCACAGATGTGTCTGCAGAGTCTTTGG 706
Query 729 GGGAAATCTGCCATCAATGCCAGAGAAAAGATAGAGAGAGAATCATTTCTTGCCTCAAAT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 707 GGGAAATCTGCCATCAATGCCAGAGAAAAGATAGAGAGAGAATCATTTCTTGCCTTAAAT 766
Query 789 GCAATCAAAGAGCCTTCTGCCACAATTGTCTATCGGCAAGGTACTCGGAGATATCACTTG 848
||||||||| |||||||||| | |||||| ||||| ||||||||||||||||||||||||
Sbjct 767 GCAATCAAAAAGCCTTCTGCGAAAATTGTATATCGACAAGGTACTCGGAGATATCACTTG 826
Query 849 AAGAAGTCGAGAAAGTTTGCCCTGCATGTCGTGGCTTGTGTGATTGCAAATCTTGCCTGC 908
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 827 AAGAAGTTGAGAAAGTTTGCCCTGCATGTCGTGGTTTGTGTGATTGCAAATCTTGCCTGC 886
Query 909 GTTCAGATAATACAATAAAGGTTCGGATCCGGGAAATACCCGTTTTGGACAAGTTGCAGT 968
|||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 887 GTTCTGATAATACAATAAAGGTTCGGATCCGGGAAAAACCCGTTTTGGAAAAGTTGCAGT 946
Query 969 ATCTTTATCGTCTATTATCAGCTGTCCTACCAGTCATAAAGCAGATCCATCTTGAACAAT 1028
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 947 ATCTTTATCGTCTATTATCAGCTGTCCTTCCAGTGATAAAGCAGATCCATCTTGAAC-A- 1004
Query 1029 GTATGGAAGTTGAACTAGAGAAGAGGCTTCGTGAAGTTGAGATTGATCTTGTCAGGGCAA 1088
|| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1005 --AT-----TTGAACTAGAGAAGAGGCTTCGTGGAGCTGAGATTGATCTTGTCAGGGCAA 1057
Query 1089 GATTGAAAGCAGATGAGCAGATGTGCTGCAACGTGTGTCGGATACCAGTTGTTGACTACT 1148
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1058 GATTGAAAGCAGATGAGCAGATGTGCTGCAACTTGTGTCGGATACCAGTTGTTGACTACT 1117
Query 1149 ACCGTCACTGTCCGAACTGCTCATATGACCTTTGCCTGAGATGCTGTCAAGATCTACGGG 1208
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1118 ACCGTCATTGTCCGAACTGCTCATATGACCTTTGCCTCAGATGCTGTCAAGATCTACGGG 1177
Query 1209 AAGAGTCTTCAGTGACGATTAGTGGGACTAACCAAAACGTACA-AGATAGAAAAGGAGCT 1267
||||||||||||| | |||| ||||||||||||||||| || | ||| || |||||||||
Sbjct 1178 AAGAGTCTTCAGTTAAGATTTGTGGGACTAACCAAAACATA-AGAGAAAGTAAAGGAGCT 1236
Query 1268 CCCAAACTAAAACTAAACTTTTCATACAAGTTTCCTGAGTGGGAAGCCAACGGTGATGGG 1327
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CCTAAACTAAAACTAAACTTTTCATACAAGTTTCCTGAGTGGGAAGCCAACGGTGATGGG 1296
Query 1328 AGCATCCCTTGCCCTCCTAAGGAGTATGGAGGCTGCGGTTCAC-ATTCTTTGAATCTTGC 1386
||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||
Sbjct 1297 AGCATCCCTTGCCCTCCTATTGAGTATGGAGGCTGCGGTTC-CTGTTCTTTGAATCTCGC 1355
Query 1387 CCGCATTTTCAAGATGAATTGGGTTGCAAAGCTTGTGAAAAATGCTGAGGAGATTGTTAG 1446
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1356 TCGCATTTTCAAGATGAATTGGGTCGCAAAGCTTGTGAAAAATGCTGAGGAGATTGTTAA 1415
Query 1447 TGGCTGCAAATTATCTGATCTTCTGAACCCTGATATGTGTGATTCAAGATTCTGCAAATT 1506
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1416 TGGCTGCAAATTATCTGATCTTCGGAACCCTGATATGTGTGATTCCAGTTTCTGCAAATT 1475
Query 1507 TGCTGAGAGAGAAGAGAGCGGTGACAACTACGTGTACAGCCCGTCGCTTGAAACGATTAA 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TGCTGAGAGAGAAGAGAGCGGTGACAACTACGTGTACAGCCCGTCGCTTGAAACGATTAA 1535
Query 1567 AACTGATGGAGTAGCTAAGTTT-GAGCAACAATGGGCAGAGGGTCGGCTTGTTACTGTGA 1625
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1536 AACTGATGGAGTAGCTAA-TTTAGAGCAACAATGGGCAGAGGGTAGGCTTGTTACTGTGA 1594
Query 1626 AAATGGTACTTGATGACTCATCTTGCTCTAGATGGGATCCTGAGACTATTTGGAGGGATA 1685
||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1595 AAAGGGTACTTGACGACTCATCTTGGTCTAGATGGGATCCTGAGACTATTTGGAGGGATA 1654
Query 1686 TAGACGAGCTTTCGGACGAGAAACTGAGAGAACATGATCCATTCTTGAAGGCCATTAATT 1745
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TAGACGAGCTTTCAGTCGAGAAACTGAGAGAACATGATCCATTCTTGAAGGCCATTAATT 1714
Query 1746 GCTTGGATGGTTTAGAGGTTGATGTAAGACTTGGGGAGTTTACAAGAGCATATAAAGATG 1805
|| ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1715 GCGTGGATGGTTCAGAGGTTGATGTAAGACTTGAGGAATTTACAAAAGCATATAAAGATG 1774
Query 1806 G-AAAGAACCAAGAGACAGGTCTTCCGCTATTGTGGAAGTTAAAGGACTGGCCGA-GCCC 1863
| ||| |||||||||||||||||||| ||| | |||||||||||||||||||| | ||||
Sbjct 1775 GTAAA-AACCAAGAGACAGGTCTTCCACTACTATGGAAGTTAAAGGACTGGCC-ATGCCC 1832
Query 1864 AAGTGCTTCCGAGGAGTTCATTTTCTACCAAAGACCTGAGTTTATCAGAAGTTTTCCGTT 1923
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1833 AAGTGCTTCTGAGGAATTCATTTTCTATCAAAGACCTGAGTTTATCAGAAGTTTTCCGTT 1892
Query 1924 TCTCGAGTACATTCATCCCCGGTTAGGCCTTCTGAATGTTGCAGCCAAGTTACCTCATTA 1983
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 TCTAGAGTACATCCATCCCCGGTTAGGCCTTCTGAATGTTGCAGCCAAGTTACCTCATTA 1952
Query 1984 CTCGCTCCAAAACGATTCAGGTCCAAAGATTTATGTGTCTTGTGGGACGTACCAAGAAAT 2043
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 CTCCCTCCAAAACGATGCTGGTCCAAAGATTTATGTGTCTTGTGGGACGTACCAAGAAAT 2012
Query 2044 CAGTGCTGGCGATTCATTGACTGGTATTCACTACAACATGCGTGACATGGTATACCTATT 2103
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2013 TGGTACTGGCGATTCATTGACTAGTATTCACTACAACATGCGTGACATGGTATACCTCTT 2072
Query 2104 GGTGCACACGTCTGAAGAAACAACATTCGAAAGGGTGAGAAAAACAAAACCTGTTCCAGA 2163
||||||||| ||||||||||||||||| |||| ||||||| |||| ||||||| ||||||
Sbjct 2073 GGTGCACACATCTGAAGAAACAACATTTGAAAAGGTGAGAGAAACGAAACCTGGTCCAGA 2132
Query 2164 GGAACCTGACCAGAAGATGAGCGAAAATGAGTCACTTCTTAGCCCTGAGCAGAAATTAAG 2223
||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 2133 TGAACCCGACCAGAAGATGAGCGAAAATGAGTCACTTCTTAACCCTGAGGAAAAATTAAG 2192
Query 2224 GGACGGAGAGTTACATGATCTATCACTTGGTGAAGCCAGTATGGAGAAGAATGAACCTGA 2283
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2193 GGATGGAGAGTTACATGATCTATCACTTGATGAAGCCAATATGGAGAAGAATGAACCTGA 2252
Query 2284 GTTGGCGTTGACTGTGAATCCAGAGAACTTAACGGAAAACGGTGACAACATGGAATCTTC 2343
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2253 GTTGGCGTTGACTATGAATCCAGAGAACTTAACAGAAAACGGCCACAACATGGAATCTTA 2312
Query 2344 TTGCACATCTTCATGTGCAGGAGGAGCCCAGTGGGATGTCTTTCGACGCCAAGACGTCCC 2403
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2313 TTGCACATCTTCATGTGCAGGAGGAGCCCAGTGGGATGTCTTTCGACGGCAAGACGTCCC 2372
Query 2404 AAAGTTGTCCGGGTATTTGCAGAGAACATTCCAGAAGCCTGATAATATCCAGACTGATTT 2463
|||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2373 AAAGCTGGCCGAGTATTTGCAGAGAACATTCCAGAAGCCTGATAATAGCCAGACTGATTT 2432
Query 2464 TGTGTCACGCCCGTTGTATGAAGGATTGTTCTTAAATGAACACCACAAGAGACAACTAAG 2523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2433 TGTGTCACGCCCGTTGTATGAAGGATTGTTCTTAAATGAACACCACAAGAGACAACTAAG 2492
Query 2524 AGACGAGTTTGGAGTTGAGCCATGGACATTTGAGCAACATCGTGGTGAGGCTATCTTCAT 2583
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2493 AGACGAGTTTGGAGTTGAGCCATGGACATTTGAGCAACATCGGGGTGAGGCTATCTTCAT 2552
Query 2584 TCCGGCTGGATGTCCGTTCCAAATCACTAATCTTCAGTCGAATATTCAGGTGGCACTTGA 2643
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2553 TCCGGCTGGATGTCCGTTCCAAATCAAGAATCTTAAGTCGAATATTCAGGTGGCACTTGA 2612
Query 2644 CTTCTTGTGCCCTGAAAGCGTTGGAGAGTCAGCAAGACTAGCTGAAGAAATCCGGTGTTT 2703
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2613 CTTCTTGTGCCCTGAAAGCGTTGGAGAGTCAGTAAGACTAGCTGAAGAAATCCGGTGTTT 2672
Query 2704 ACCAAACGACCACGAGGCAAAACTTCAGATTCTAGAGATTGGAAAGATATCATTATACGC 2763
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2673 ACCAAACGACCACGAGGCAAAACTTCAGATTCTAGAGATTGGAAAGATATCGTTATACGC 2732
Query 2764 AGCTAGCTCAGCCATTAAAGAGGTTCAGAAACTGGTCTTGGATCCAAAGTTTGGAGCAGA 2823
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2733 AGCTAGCTCAGCCATTAAAGAGGTTCAGAAACTGGTCTTGGATCCAAATTTTGGAGCAGA 2792
Query 2824 GCTTGGATTTGAAGACTCTAACTTAACCAAAGCAGTCTCTCACAACTTAGACGAGGCAAC 2883
|||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2793 GCTTGGTTTTGAGGACTCTAACTTAACCAAAGCAGTCTCTCACAACTTAAACAAGGCAAC 2852
Query 2884 CAAGCGGCCGCAGCAAAACAGCTGCACTTAAATCAGTCAAGATTTGTATAGTAGTATAAA 2943
||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 2853 CAAGCGGCCGCAGCAAATGAGTTGCACTTAA-TCAGTCAAGATTTGTATAGTAGTATAAA 2911
Query 2944 AATCATTGTTGTGACTTTAGTTTAGACGACTACTACTACTATTCAGGATTTGTAATGTAT 3003
||||||||||||||||||||||||||| ||||| | | |||||||||||||||||
Sbjct 2912 AATCATTGTTGTGACTTTAGTTTAGAC---TACTA-T--T---CAGGATTTGTAATGTAT 2962
Query 3004 CTATGACT--GTGTATATCATGCTTCATATAGTATATTCATAACCATCATTATTCCACAT 3061
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2963 CTATGACTCTGTGTATATCATGCTTCATAAAGTATATTCATAACCATCATTATTCCACAT 3022
Query 3062 AATTTTT 3068
|||||||
Sbjct 3023 AATTTTT 3029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116518059455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5