BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09070.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470988 jgi|Araly1|470988|fgenesh2_kg.1__942__AT1G09070.1 1735 0.0
> Ahg470988 jgi|Araly1|470988|fgenesh2_kg.1__942__AT1G09070.1
Length=1218
Score = 1735 bits (939), Expect = 0.0
Identities = 1120/1204 (93%), Gaps = 25/1204 (2%)
Strand=Plus/Plus
Query 48 TTTCGATCCGAGT----AACCATGGAGTGTAGATCATTGGATCTGACGATTATATCTGCG 103
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 24 TTTCGATCCGAGTAACCAACCATGGAGTGTAGATCATTGGATCTGACGATAATATCGGCG 83
Query 104 GAGGATCTCAAAGACGTTCAATTGATCGGTAAACAAGACTTGTACGCCGTCGTTTCCATC 163
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 84 GAGGATCTCAAAGACGTTCAATTGATCGGTAAACAAGACTTGTACGCCGTCGTTTCAATC 143
Query 164 AACGGCGACGCTAGGACGAAGCAGAAGACAAAGGTTGATAAAGATTGCGGCACCAAACCT 223
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 144 AACGGTGACGCAAGGACGAAGCAGAAGACAAAGGTTGACAAAGATTGCGGCACCAAACCT 203
Query 224 AAATGGAAGCATCAAATGAAGCTCACCGTCGATGACGCAGCGGCGCGTGACAATCGTCTT 283
|||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||| |||
Sbjct 204 AAATGGAAACATCAGATGAAGCTCACCGTTGATGACGCGGCGGCGCGTGAGAATCGCCTT 263
Query 284 ACTCTTGTTTTCGAGATCGTGGCGGATCGTCCCATCGCTGGTGATAAACCTGTCGGTGAG 343
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 264 ACTCTTGTTTTCGAGATCGTGGCGGATCGTCCCATCGCTGGTGATAAATCTGTCGGTGAG 323
Query 344 GTTAGCGTTCCGGTGAAGGAGCTTTTGGATCAGAATAAAGGTGACGAGGAGAAAACGGTT 403
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 324 GTTAGCGTTCCGGTGAAGGAGCTTTTGGATCAGAACAAAGGTGACGAGGAGAAAACGGTT 383
Query 404 ACTTACGCCGTGAGGTTGCCTAACGGGAAGGCGAAAGGATCTCTCAAATTCTCGTTCAAA 463
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 384 ACTTACGCCGTGAGGTTGCCTAACGGGAAAGCTAAAGGATCTCTCAAATTCTCCTTCAAA 443
Query 464 TTTGGGGA-AAAGTATACTTATGGATCTTCGAGTGGTCCTCACGCGCCGGTCCCTTCGGC 522
|||||||| ||| ||||||| |||| ||||||||| ||||||||| ||||| || ||||
Sbjct 444 TTTGGGGAGAAA-TATACTTTTGGAGCTTCGAGTGCTCCTCACGCACCGGTTCCAGCGGC 502
Query 523 TATGGATCATAAGACTATGGATCAGCCCGTCACCGCTTACCCGCCCGGACACGGTGCACC 582
| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 503 TCTGGATCATAAGACCATGGATCAGCCCGTCACCGCTTACCCGCCCGGACACGTTGCACC 562
Query 583 GTCTGCATACCCTGCTCCTCCCGCGGGTCCTTCTTCCGGATATCCACCACAAGGACATGA 642
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 563 GTCTGCATACCCTGCTCCTCCTGCGGGTCCTTCTTCCGGATATCCACCACCAGGACATGA 622
Query 643 CGATAAGCACGATGGTGTTTATGGATACCCGCAGCAGGCTGGATAT---CCAGCTGGAAC 699
||||||| ||| ||||||||| |||||||||||||||||||||||| ||| ||||| |
Sbjct 623 CGATAAGTACGGTGGTGTTTACGGATACCCGCAGCAGGCTGGATATCCGCCACCTGGACC 682
Query 700 CGGTGGTTATCCGCCACCTGGTGCATACCCACAACAGGGAGGTTACCCTGGATATCCGCC 759
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 683 CGGTGGATATCCGCCACCTGGTGCATACCCGCAACAGGGAGGTTACCCGGGATATCCTCC 742
Query 760 TCAGCAACAGGGTGGATACCCGGGTTATCCGCCACAGGGTCCATATGGTTACCCGCAACA 819
|| ||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 743 TCCGCAACAGGGAGGTTACCCGGGATATCCTCCACAGGGTCCATATGGTTACCCGCAACA 802
Query 820 AGGTTATCCACCACAGGGTCCATACGGTTACCCGCAACAGCAAGCTCATGGTAAACCGCA 879
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 803 AGGTTATCCACCACAGGGTCCATACGGTTACCCGCAACAGCAAGCTTATGGTAAACCGCA 862
Query 880 GAAACCGAAGAAGCATGGTAAGGCTGGAGCTGGAATGGGACTAGGACTTGGGCTTGGAGC 939
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 863 GAAACCGAAGAAGTACGGTAAGGCTGGAGCTGGAATGGGACTAGGGCTTGGGCTTGGAGC 922
Query 940 TGGTTTATTGGGTGGGTTGTTGGTTGGTGAAGCGGTTTCTGACATCGCTGATATGGGTGA 999
||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 923 TGGTTTATTGGGTGGGTTGCTGGTGGGTGAAGCGGTTTCTGACATCGCAGATATGGGTGA 982
Query 1000 CATGGGTGACATGGGTGACATGGGTGGTTTCGATTTCTGATTGCTGTGTTATCAAGTTTT 1059
|||||||||||||||| | || |||||||||||||||||| ||||||||| ||||
Sbjct 983 TATGGGTGACATGGGTG----G--TGATTTCGATTTCTGATTGCTATGTTATCAACTTTT 1036
Query 1060 AATTTCTTAGGATAATTGCTCTAATGTTTTTCGTTTGATGAATCATGTGAAGAACGTGAG 1119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1037 AATTTCTTAGGATAATTGCTCTA-TGTTTTTCGTTTGATGAATCATGTGAAGAACGTGAG 1095
Query 1120 AGATCAAGTTTTATCTTGTGTTTATGTCTCCGGTTACTTATTTT-CTTCTAATGAATGTA 1178
||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1096 AGATCAAGTCTTATCTTGTGTTTATGTCTCTGGTTACTTCTTTTTCTTCTAATGAATGTA 1155
Query 1179 ---A-CATTATGAT---ATTTCCAATCTCTGGCTGTTGAATAGAATGCAATGAAACATTG 1231
| ||||||||| |||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1156 TTGAACATTATGATGCTATTTCCAATCACTG-CTGTTGAATAGAATGCAATGAAACATAG 1214
Query 1232 GAAA 1235
||||
Sbjct 1215 GAAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5