BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09090.2
Length=2627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470991 jgi|Araly1|470991|fgenesh2_kg.1__945__AT1G09090.2 1125 0.0
> Ahg470991 jgi|Araly1|470991|fgenesh2_kg.1__945__AT1G09090.2
Length=2304
Score = 1125 bits (609), Expect = 0.0
Identities = 669/698 (96%), Gaps = 4/698 (1%)
Strand=Plus/Plus
Query 1876 TCAAAGTGGGCTCTTCATAGCTGACATAGGTCAAGCCAACAATATAACCAGGTTTCCGAG 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 TCAAAGTGGGCTCTTCATAGCTGACATAGGTCAAGCCAACAATATAACCAGGTTTCCGAG 1666
Query 1936 GCTGTTAATCGATGGTCCATATGGTGCACCCGCACAAGATTACCGGAACTACGATGTATT 1995
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1667 GCTGTTAATCGATGGTCCATATGGTGCACCAGCACAAGATTACCGGCACTACGATGTATT 1726
Query 1996 GCTTCTAGTAGGTCTAGGGATCGGAGCGACGCCATTAATCAGCATAATCAGGGACGTCCT 2055
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 GCTTCTGGTAGGTCTAGGGATCGGAGCGACGCCATTAATCAGCATAATCAGGGACGTCCT 1786
Query 2056 TAACAACATCAAGAACCAGAATTCCATCGAACGAGGCACTAACCAACACATAAAAAACTA 2115
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1787 TAACAACATCAAGAACCAGAAATCGATCGAACAAGGCACTAACCAACACATAAAAAACTA 1846
Query 2116 TGTTGCCACAAAACGAGCTTATTTTTATTGGGTAACAAGAGAGCAAGGATCATTGGAATG 2175
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1847 TGTTGCCACAAAACGAGCTTATTTCTATTGGGTAACAAGAGAGCAAGGATCATTGGAATG 1906
Query 2176 GTTCAGTGAGGTCATGAACGAGGTAGCTGAGTATGATAGTGAGGGGATGATTGAACTACA 2235
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1907 GTTCAGTGAGGTCATGAACGAGGTAGCTGAGTACGATAGCGAGGGGATGATTGAACTACA 1966
Query 2236 TAATTACTGCACTAGCGTGTATGAGGAAGGAGATGCGAGGTCAGCACTAATCACCATGTT 2295
||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1967 TAATTACTGTACGAGCGTGTATGAGGAAGGAGACGCGAGGTCAGCACTAATCACAATGTT 2026
Query 2296 GCAGTCATTGCACCACGCCAAGAGCGGCATTGACATCGTATCGGGCACTCGGGTCCGAAC 2355
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2027 GCAGTCATTGCACCATGCCAAGAGCGGCATTGACATCGTATCGGGCACGCGGGTCCGAAC 2086
Query 2356 CCATTTCGCTCGACCCAATTGGCGTAGTGTCTTCAAGCACGTCGCAGTCAACCACGTCAA 2415
|||||||||||| ||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct 2087 CCATTTCGCTCGTCCCGATTGGCGTAGCGTCTTCAAGCACGTTGCTGTCAACCACGTCAA 2146
Query 2416 TCAACGAGTTGGGGTTTTCTACTGTGGTAATACATGCATCATAGGAGAGTTAAAGAGACT 2475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TCAACGAGTTGGGGTTTTCTACTGTGGTAATACATGCATCATAGGAGAGTTAAAGAGACT 2206
Query 2476 GGCTCAAGATTTCTCTAGGAAAACTACGACCAAGTTTGAGTTCCACAAGGAAAATTTCTA 2535
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2207 AGCTCAAGATTTCTCTAGGAAAACTACGACCAAGTTTGAGTTCCACAAGGAGAATTTTTA 2266
Query 2536 GTTTCGATTCTATT----CATCCATCAGACCATCATTA 2569
||||| |||||||| ||||||||||||||| ||||
Sbjct 2267 GTTTCAATTCTATTAAATCATCCATCAGACCATTATTA 2304
Score = 905 bits (490), Expect = 0.0
Identities = 590/638 (92%), Gaps = 7/638 (1%)
Strand=Plus/Plus
Query 1001 ACCGTGGCCAAAGGCAGTGCAGAGACCTTGAAATTCAACATGGCTCTCATTCTCTTGCCC 1060
||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 918 ACC-TGGCCAAAGGCAGTG--GAGACCTTGAAATTCAACATGGCTCTCATCCTCTTGCCC 974
Query 1061 GTTTGTAGGAACACTATCACTTGGCTAAGGACCAAGTCCAAGCTTATTGGGTCTGTTGTT 1120
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 975 GTTTGTAGGAACACTATAACTTGGCTAAGGACCAAGTCAAAGCTTATTGGGTCCGTTGTT 1034
Query 1121 CCATTTGATGACAATATCAATTTCCACAAGGTTGTTGCATTTGGGATCGCGGTTGGAA-T 1179
|||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||| |
Sbjct 1035 CCATTTGATGACAACATCAATTTCCACAAGGTTATTGCGTTTGGGATCGCAATTGGAACT 1094
Query 1180 AGGCTTGCACGCTATATCTCACCTGGCATGTGATTTCCCGCGTTTGCTGCATGCAAAAAA 1239
||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1095 -GGCTTACACGCCATATCTCACCTGGCATGCGATTTCCCGCGTTTGTTGCATGCAAAAAA 1153
Query 1240 TGTAGAGTTTGAGCCAATGAAAAA-GTTTTTCGGAGACGAGAGGCCTGAAAATTATGGAT 1298
|||||| | ||||||| | ||||| ||||||||||||||||||||| || ||||| ||||
Sbjct 1154 TGTAGAATATGAGCCAGT-AAAAAGGTTTTTCGGAGACGAGAGGCCGGACAATTACGGAT 1212
Query 1299 GGTTCATGAAAGGGACAGACGGGTGGACCGGTGTTACCATGGTGGTTCTTATGTTAGTGG 1358
||||||||||||||||||| || |||||||| || |||||||||||||| ||| ||||||
Sbjct 1213 GGTTCATGAAAGGGACAGATGGTTGGACCGGAGTCACCATGGTGGTTCTAATGGTAGTGG 1272
Query 1359 CCTACGTCTTGGCGCAGTCGTGGTTCAGACGAAACCGGGCAAACCTACCAAAATCGTTGA 1418
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1273 CCTACGTCTTGGCGCAGTCTTGGTTCAGACGCAACCGGGCAAACCTACCAAAATCGTTGA 1332
Query 1419 AACGATTGACTGGTTTCAACGCATTTTGGTACTCACACCATTTGTTTGTCATCGTTTATG 1478
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1333 AACGATTGACGGGTTTCAACGCGTTTTGGTACTCGCACCATTTGTTTGTCATCGTTTATG 1392
Query 1479 TTCTTCTCATCGTGCATGGCTATTTTGTTTATCTCTCAAAGGAATGGTACCACAAGACGA 1538
| ||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1393 TGCTTCTAATCGTGCATGGCTATTTTATCTATCTCTCCAAGGAATGGTACCACAAGACGA 1452
Query 1539 CGTGGATGTATCTGGCAGTTCCCGTACTACTATATGCATTTGAACGATTGATTCGTGCAT 1598
|||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 1453 CGTGGATGTATCTGGCTGTTTCCGTTCTACTATATGCATCTGAACGATTGATTCGTGCAT 1512
Query 1599 TTAGACCAGGTGCCAAGGCTGTCAAGGTTTTGAAGGTG 1636
|||||||||||||||||||||||||| |||| ||||||
Sbjct 1513 TTAGACCAGGTGCCAAGGCTGTCAAGATTTTAAAGGTG 1550
Score = 682 bits (369), Expect = 0.0
Identities = 405/423 (96%), Gaps = 0/423 (0%)
Strand=Plus/Plus
Query 551 GTGGACAAAAATTTGGACGGACGTATTACAGGAGATGAGGTTAAGGAGATAATTGCTTTA 610
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 498 GTGGACAAAAATTTGGACGGACGTATTACTGGAGATGAGGTTAAGGAGATAATTGCTTTA 557
Query 611 AGTGCTTCGGCTAACAAGCTATCAAAGATTAAAGAAAATGTAGATGAATATGCTGCCTTG 670
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 558 AGTGCTTCGGCGAACAAACTATCAAAGATTAAGGAAAATGTAGATGAATATGCTGCCTTG 617
Query 671 ATCATGGAAGAACTAGATCGCGACAACCTCGGATATATTGAGTTACATAACTTGGAAACA 730
|||||||||||||| |||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 618 ATCATGGAAGAACTCGATCGCAACAACCTCGGATATATTGAGCTACACAACTTGGAAACA 677
Query 731 TTGCTTCTCCAAGTTCCTAGCCAATCAAATAACAGTCCATCTTCCGCGAACAAACGTGCA 790
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 678 TTGCTTCTCCAAGTTCCAAGCCAATCAAACAACAGTCCATCTTCCGCGAACAAACGTGCA 737
Query 791 CTCAACAAGATGTTGAGCCAGAAGCTCATACCAACAAAAGATCGAAACCCGGTGAAAAGA 850
||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||
Sbjct 738 CTCAACAAGATGTTGAGTCAGAAGCTGATACCAACGAAAGATCGGAACCCGGTGAAAAGA 797
Query 851 TTTGCTATGAATATATCATACTTCTTCTTGGAAAATTGGAAAAGGATTTGGGTGTTAACA 910
||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 798 TTTGCTAGGAATATTTCATACTACTTCTTGGAAAATTGGAAAAGGATTTGGGTGTTAACA 857
Query 911 TTGTGGATATCCATTTGCATCACTCTCTTCACTTGGAAATTTCTCCAGTATAAACGCAAA 970
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 858 TTGTGGATATCCATTTGCATCGCTCTCTTCACTTGGAAATTTCTCCAGTATAAACGCAAA 917
Query 971 ACC 973
|||
Sbjct 918 ACC 920
Score = 303 bits (164), Expect = 3e-81
Identities = 213/237 (90%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 3 GAATGCGGGAGGAAGAAATGGAATCTTCGTCAGAAGGTGAGACAAA-CAAGATTTCCCGA 61
|||||| ||||||| ||||||||||| |||||||| |||| ||| |||||||||||||
Sbjct 1 GAATGCAAGAGGAAGGAATGGAATCTTGGTCAGAAGAAGAGA-AAATCAAGATTTCCCGA 59
Query 62 TGCAAAGCCACTGGTTCAGACAATCCTGATGAGGACTACGTCGAGATCACACTCGAAGTG 121
||||||||||||||| |||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct 60 TGCAAAGCCACTGGTCCAGAAAATTCTGAAGAGGACGACGTCGAGATCACACTCGAAGTG 119
Query 122 CGAGACGAAACCATCAACACAATGAAGGCCAAGGCGACACTTCGTTCGGTTCTTTCCGGG 181
|||||||||| |||| ||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 120 CGAGACGAAAGCATCGGCACAACGAAGGCCAAGGCGACACTTCGGTCTGTTCTTTCCGGG 179
Query 182 AGGCTGAAAACGATGGTTAAGTCGCTATCGTTTGCTTCACGCCGGCTCGACCGTAGT 238
|| || ||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 180 AGACTAAAAACGATGGTTAAGACGTTGTCGTTTGCTTCACGCCGGCTCGACCGTAGT 236
Score = 187 bits (101), Expect = 3e-46
Identities = 113/119 (95%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 272 TTGAGGTTCATTGCCAAAAACGACGCCGTTGGTAGAGGCTGGGATGAGGTTGCAATGAGG 331
||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 237 TTGAGGTTCATTGCCAAAACCGACGCCGTTGGCAGAGGCTGGGATGAGGTTGCAACGAGG 296
Query 332 TTTGATAAGTTGGCCGTTGAAGGGAAACTCCCTAAATCCAAATTTGGACATTGCATAGG 390
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 TTCGATCAGTTGGCCGTTGAAGGGAAGCTCCCTAAATCCAAATTTGGACATTGCATAGG 355
Score = 104 bits (56), Expect = 3e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 422 CTTTTTGAGGCGTTGGTCCGAAGGAGAGGGACTACGTCATCGTCAATCACCAAAACTGAA 481
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 422 CTTTTTGAGACGTTGGTCCGAAGGAGAGGGACTTCGTCATCGTCAATCACCAAAACTGAA 481
Query 482 TT 483
||
Sbjct 482 TT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99072727245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5