BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09100.1
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311956 jgi|Araly1|311956|fgenesh1_pm.C_scaffold_1000736 1664 0.0
> Ahg311956 jgi|Araly1|311956|fgenesh1_pm.C_scaffold_1000736
Length=1221
Score = 1664 bits (901), Expect = 0.0
Identities = 1031/1089 (95%), Gaps = 27/1089 (2%)
Strand=Plus/Plus
Query 252 AAGATTAAGCTTAACAAACAGCTTCCTTACTTAGTTGGCAATATCGTTGAGATTCTTGAG 311
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 160 AAGATTAAGCTAAACAAACAGCTTCCTTACTTAGTCGGCAATATCGTTGAGATTCTTGAG 219
Query 312 ATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCGATCTGGACTCTCAGAGG 371
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 220 ATGAGTCCAGAGGATGATGCAGAGGAATATGGAGCGAATATCGATCTGGACTCTCAGAGG 279
Query 372 AAGGGAAAGTGTGTCGTTCTAAAAACATCAACTCGTCAGACCATCTTCCTCCCTGTTGTT 431
|||||||| || |||||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct 280 AAGGGAAAATGCGTCGTTCTTAAAACATCAACTCGCCAGACCATCTTTCTCCCCGTTGTT 339
Query 432 GGACTTGTTGATCCAGATACATTGAAGCCTGGGGACTTAGTTGGAGTTAACAAAGATAGT 491
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GGACTTGTTGATCCGGATACATTGAAGCCTGGGGACTTAGTTGGAGTTAACAAAGATAGC 399
Query 492 TACTTGATTCTGGATACTTTACCTTCTGAGTATGATTCAAGAGTAAAAGCAATGGAGGTC 551
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 400 TACTTGATTCTGGATACTTTGCCGTCTGAATATGATTCAAGAGTAAAAGCAATGGAGGTT 459
Query 552 GACGAAAAACCTACTGAAGACTACAATGATATAGGGGGACTAGAAAAACAGATACAAGAA 611
|||||||||||||||||||||||||||||||||||||||||||| || ||| | | ||
Sbjct 460 GACGAAAAACCTACTGAAGACTACAATGATATAGGGGGACTAGAGAAGCAG--GCTA-AA 516
Query 612 CTTGTTGAAGCCATTGTGTTGCCAATGACTCATAAAGAGCAGTTCGAAAAGTTGGGTATC 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTTGTTGAAGCCATTGTGTTGCCAATGACTCATAAAGAGCAGTTCGAAAAGTTGGGTATC 576
Query 672 CGTCCACCAAAAGGTGTACTCTTGTATGGTCCTCCTGGAACCGGAAAGACGTTGATGGCC 731
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CGGCCACCTAAAGGTGTACTCTTGTATGGTCCTCCTGGAACCGGAAAGACGTTGATGGCC 636
Query 732 CGAGCTTGTGCAGCACAGACAAATGCAACTTTCCTCAAACTAGCAGGGCCACAACTTGTT 791
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 637 CGAGCTTGTGCAGCACAGACAAATGCAACTTTCCTGAAACTAGCAGGGCCACAACTT--- 693
Query 792 CAGATGTTCATCGGAGATGGAGCAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAG 851
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 -A--TGTTCATTGGAGATGGAGCAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAG 750
Query 852 AAATCCCCTTGTATTATATTCATAGATGAGATTGACGCAATAGGGACAAAGCGTTTTGAT 911
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 751 AAATCCCCTTGTATTATATTCATAGACGAGATTGACGCAATTGGGACAAAGCGTTTTGAT 810
Query 912 AGCGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTT 971
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 811 AGCGAAGTTAGTGGAGACCGTGAGGTGCAAAGGACAATGTTGGAGCTGCTCAACCAGCTG 870
Query 972 GATGGATTCAGCAGCGATGATCGCATTAAGGTTATTGCAGCGACAAATCGTGCTGATATA 1031
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 871 GATGGATTCAGCAGCGATGATCGCATCAAGGTTATTGCAGCGACAAATCGTGCTGATATA 930
Query 1032 CTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATCGTAAAATCGAGTTTCCGCACCCC 1091
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 931 CTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATCGTAAAATCG-G---C---ACCCC 983
Query 1092 ACTGAAGAAGCTAGAGGCAGGATCTTACAGATACATTCAAGGAAAATGAATGTGAATGCA 1151
|||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 984 ACTGAAGAAGCTAGAGGCAGGATCTTACAG----------G-AAAATGAATGTGAATGCA 1032
Query 1152 GACGTCAATTTTGAAGAGCTTGCTCGGTCAACGGATGATTTCAATGGAGCTCAACTCAAA 1211
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1033 GACGTCAATTTTGAAGAGCTTGCTCGATCAACGGATGATTTCAATGGAGCTCAACTCAAA 1092
Query 1212 GCAGTGTGTGTTGAAGCGGGTATGCTTGCCCTGCGCCGGGATGCAACTGAGGTGAACCAT 1271
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GCAGTGTGTGTTGAAGCGGGTGTGCTTGCCCTGCGCCGGGATGCAACTGAGGTGAACCAT 1152
Query 1272 GAGGATTTCAATGAAGGTATAATTCAAGTACAAGCCAAGAAGAAAGCAAGCTTGAATTAC 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1153 GAGGATTTCAATGAAGGTATAATTCAAGTACAAGCCAAGAAGAAAGCAAGCTTAAATTAC 1212
Query 1332 TACGCCTAA 1340
|||||||||
Sbjct 1213 TACGCCTAA 1221
Score = 222 bits (120), Expect = 5e-57
Identities = 138/147 (94%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 75 ACGGCGATGGCGGAGGATACGAGCTTCGAGGGAGACCAACTAGCTTCCATGACTACTGAT 134
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||
Sbjct 13 ACGGCGATGGCGGAGGATACGAGCTTCGAGGAAGAGCAACTAGTTTCCATGACTCCTGAT 72
Query 135 GACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGGAAGAATCG 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 73 GACATCCCTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGGAAGAATTG 132
Query 195 CAGAGGACAAACCTTGATTTGGAATCA 221
|||||| ||||||| ||||||||||||
Sbjct 133 CAGAGGGCAAACCTGGATTTGGAATCA 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55649847945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5