BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09130.3
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919661 jgi|Araly1|919661|scaffold_100942.1 1626 0.0
> Ahg919661 jgi|Araly1|919661|scaffold_100942.1
Length=1039
Score = 1626 bits (880), Expect = 0.0
Identities = 962/1002 (96%), Gaps = 4/1002 (0%)
Strand=Plus/Plus
Query 57 AAGAGCTCCTCGACCATGGCGTCTTGTTTACAAGCATCCATGAATTCTCTGCTTCCACGC 116
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 6 AAGAGCTCCTCAACCATGGCGTCTTGCTTACAAGCATCCATGAATTCTCTGCTACCACGT 65
Query 117 TCTTCTTCTTTTTCTCCTCATCCTCCTCTATCTTCGAATTCATCCGGGAGAAGAAACTTG 176
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 66 TCTTCTTCTTTTTCTCCTCATCCTCCTCTATCTTTGAATTCATCCGGGAGAAGAAACTTG 125
Query 177 AAGACTTTTCGTTACGCCTTTCGCGCCAAAGCCTCTGCCAAAATCCCTATGCCTCCGATA 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 126 AAGACTTTTCGTTACGCCTTTCGCGCCAAAGCCTCTGCTAAAATCCCTATGCCTCCGATA 185
Query 237 AATCCAAAGGATCCTTTCCTCTCCACGCTCGCTTCTATTGCCGCGAATTCTCCGGAAAAG 296
||||| ||||||||||||||||| ||||||||||||||||| || |||||||||| ||||
Sbjct 186 AATCCTAAGGATCCTTTCCTCTCAACGCTCGCTTCTATTGCAGCAAATTCTCCGG-AAAG 244
Query 297 -CTTCTCAATCGGCCGGTTAACGCTGATGTGCCGCCATATCTTGACATCTTTGACTCCCC 355
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 245 ACTTCTCAATCGGCCGGTTAACGCTGATGTGCCTCCGTATCTTGACATCTTTGACTCCCC 304
Query 356 TCAGCTCATGTCTTCTCCTGCACAGGTTGAAAGATCAGTGGCTTATAACGAGCACCGACC 415
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 305 TCAGCTCATGTCTTCTCCTGCTCAGGTTGAAAGATCAGTGGCTTATAATGAGCACCGACC 364
Query 416 GAGAACTCCTCCACCAGACTTGCCATCTATGCTTCTTGACGGGAGAATTGTTTACATTGG 475
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 365 GAGAACTCCTCCACCAGACTTGCCTTCTATGCTTCTTGACGGGAGAATTGTTTACATTGG 424
Query 476 AATGCCTCTTGTGCCGGCAGTGACTGAGCTAGTTGTCGCTGAGCTAATGTATCTTCAGTG 535
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 425 AATGCCTCTTGTGCCGGCAGTCACAGAGCTGGTTGTCGCTGAGCTAATGTATCTTCAGTG 484
Query 536 GCTGGATCCCAAGGAACCCATTTACATTTACATCAACTCCACAGGGACCACTCGTGATGA 595
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 485 GCTAGATCCCAAGGAACCCATATACATTTACATCAATTCCACAGGGACCACTCGTGATGA 544
Query 596 TGGAGAGACGGTTGGAATGGAATCAGAAGGGTTT-GCGATCTATGACTCTTTGATGCAAC 654
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 545 TGGAGAGACGGTTGGAATGGAATCAGAA-GGTTTCGCCATCTATGACTCTTTGATGCAAC 603
Query 655 TTAAAAACGAGGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTAC 714
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTAAAAATGAGGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTAC 663
Query 715 TTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAGCGATGATTCAGC 774
| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 664 TATCAGCGGGAACCAAGGGTAACCGGTTTATGATGCCACATGCCAAAGCGATGATCCAGC 723
Query 775 AACCACGTGTACCTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAG 834
|||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 724 AACCACGTGTGCCTTCTTCTGGGTTGATGCCTGCCAGCGATGTCCTGATACGTGCCAAAG 783
Query 835 AGGTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGGAATTCCG 894
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AGGTCATAACAAACAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGGAATTCCG 843
Query 895 TGGAGACTGTAGCTAACGTAATGAGAAGGCCATATTACATGGATGCACCAAAAGCTAAAG 954
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 844 TGGAGACTGTAGCTAACGTAATGAGAAGGCCATATTACATGGATGCACCTAAAGCTAAAG 903
Query 955 AATTTGGAGTCATTGACAGGATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGG 1014
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 904 AATTTGGAGTCATTGACAAGATTCTTTGGCGCGGTCAAGAGAAGATTATTGCGGACGTGG 963
Query 1015 TTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCG 1056
||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCG 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5