BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09150.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919663 jgi|Araly1|919663|scaffold_100944.1 937 0.0
Ahg920939 jgi|Araly1|920939|scaffold_102220.1 117 2e-25
Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019 108 1e-22
> Ahg919663 jgi|Araly1|919663|scaffold_100944.1
Length=586
Score = 937 bits (507), Expect = 0.0
Identities = 560/586 (96%), Gaps = 1/586 (0%)
Strand=Plus/Plus
Query 199 TTTTCAAT-AAACCTCGAACATGTTTAAGAAGTTTTGTTTGGAGGAGATTTCATCACAAA 257
|||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCAATAAAACTTCCAACATGTTCAAGAAGTTTTGTTTGGAGGAGATTTCATCACAAA 60
Query 258 ACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGTACCCGG 317
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATTCAAGATGAGTACCCGG 120
Query 318 GACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGT 180
Query 378 GCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTG 240
Query 438 ACGGGCCATACATGCCAACACTGCGGCTTCTTCATCAATACCCAAATATAATGAAGAGGT 497
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGGGCCATACATGCCAACTTTGCGGCTTCTTCATCAATACCCAAATATAATGAAGAGGT 300
Query 498 TTCAAGTTGATAGAGGTGCCATAAAGTTTGTTCTGTCTGGTGCAAACATAATGTGTCCTG 557
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 301 TTCAAGTTGATAGAGGTGCCATAAAGTTTGTTCTCTCTGGTGCAAACATAATGTGCCCTG 360
Query 558 GTCTTACATCCCCGGGAGGCGTTCTGGATCAAGAAGTCGAGGCTGAAAGGCCAGTGGCCA 617
||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 361 GTCTTACGTCCCCAGGAGGCGTTCTGGATGTAGAAGTCGACGCTGAAAGGCCAGTGGCCA 420
Query 618 TATATGCAGAAGGAAAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGG 677
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 TATATGCAGAAGGAAAACAACATGCCTTAGCAATAGGCTTCACCAAAATGTCTGCAAAGG 480
Query 678 ACATAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGACGGTC 737
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 481 ACATAAAGAGCATCAACAAAGGAATTGGAGTGGACAACATGCATTACCTCAACGACGGTC 540
Query 738 TCTGGAAGATGGAACGACTAGACTGAGGACAATGTCAAATGTGAAT 783
||||||||||||| || ||||| |||||| |||||| |||| |||
Sbjct 541 TCTGGAAGATGGAGCGGCTAGATTGAGGATGATGTCAGATGTCAAT 586
> Ahg920939 jgi|Araly1|920939|scaffold_102220.1
Length=444
Score = 117 bits (63), Expect = 2e-25
Identities = 71/75 (95%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 851 CAACCTTAGCTTTGGTTTGATTTGTTTTCAAACATTTGATACTTATTTTATGAGGGAACG 910
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 355 CAACCTTAGCTTTGATTTGATTTGTTTTCAAACATTTGATACTTATTTTAAGAGGGAACA 414
Query 911 TCAACCTTAGCTAAG 925
|||||| ||||||||
Sbjct 415 TCAACCCTAGCTAAG 429
> Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019
Length=792
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 851 CAACCTTAGCTTTGGTTTGATTTGTTTTCAAACATTTGATACTTATTTTATGAGGGAACG 910
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 723 CAACCTTAGCTTTGATTTGATTTGTTTTCAAACATTTGATACTTATTTTAAGAGGGAACA 782
Query 911 TCAACCTTAG 920
|||||| |||
Sbjct 783 TCAACCCTAG 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5