BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09155.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470998 jgi|Araly1|470998|fgenesh2_kg.1__952__AT1G09155.1 1271 0.0
> Ahg470998 jgi|Araly1|470998|fgenesh2_kg.1__952__AT1G09155.1
Length=1031
Score = 1271 bits (688), Expect = 0.0
Identities = 851/927 (92%), Gaps = 22/927 (2%)
Strand=Plus/Plus
Query 129 ACTTTAATTCTGAAGAAGGATGATGTTACCAGAAGCATGCGTGGCGACTATCCTCTCATT 188
|||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 74 ACTTCAATTGTGAAGAAGGATGATGTTACCAGAAGCATGCGTGGCGAATATCCTCTC-TT 132
Query 189 T-ACAACTCCGGCTGACACAATCTCGTCGGCGGCTGTCTCATCAGTTTTCCGAGTCGCCG 247
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 133 TCACAACTCCAGCTGACACATTCTCGTCGGCGGCTGTCTCATCAGTTTTCCGAGTCGCCG 192
Query 248 GAGACTCTGACTTTGTGTGGGAGAAGTTTTTACCGACCGATTACTGCCACGTCATCTCTA 307
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GAGACTCTGACTTTGTCTGGGAGAAGTTTTTACCGACCGATTACTGCCACGTCATCTCTA 252
Query 308 GATCGACTGATCCTCACCGAATTTTCTCTTCTAAAAAGGAGCTTTATCGATGTCTCTGTG 367
|||||| || ||||||||| | ||||||||| ||||||||||||||||||| ||||||||
Sbjct 253 GATCGAGTGGTCCTCACCGGAGTTTCTCTTCCAAAAAGGAGCTTTATCGATATCTCTGTG 312
Query 368 AATCAATTCTCATCGATAATGGCAGAAAGATTTTCAAGATCGAGAAGCTTTCAGGGAAAA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 AATCAATTCTCATCGATAATGGCAGAAAGATTTTCAAGATCGAGAAGCTTTCAGGGAAAA 372
Query 428 TATCGTATATTTTGTC-GTCAAGAGATCTTTCCATAACTTGGAGCGATCAAAGACATTAC 486
|||||||||||||||| | ||||||||||||| |||||||||||||| || ||||||||
Sbjct 373 TATCGTATATTTTGTCAG-CAAGAGATCTTTCTATAACTTGGAGCGACCAGCGACATTAC 431
Query 487 TGGTCTTGGAGCCCACGATCAGATTCAAGGTTTTCCGAAGGAGTCCAACTTATAATGACA 546
|||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 432 TGGTCTTGGAGCCCTCGATCAGATTCAAGGTTTTCGGAAGGAGTCGAACTTATTATGACG 491
Query 547 GATTGGTTAGAAATCATCGGAAAAATCCAAACCGGAGCTTTATCGCCGAACACAAACTAC 606
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 492 GATTGGTTAGAAATCATCGGAAAAATCCAAACCGGAGTTTTATCACCGAACACAAACTAT 551
Query 607 GGAGCTTATCTGATTATGAAAGTAACGTCACGTGCCTATGGACTAGACCTAGTTCCGGCA 666
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 552 GGAGCTTATTTGATTATGAAAGTGACGTCACGTGCCTATGGACTAGACCTAGTTCCGGCA 611
Query 667 GAGACATCGATAAAAGTGGGAAATGGTGAAAAGAAAATAAAGTCAACTTATCTAAGTTGC 726
||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 612 GAGACTTCGATAAAAGTGGGGAATTGTGAAAAGAAAATAAGGTCAACTTATCTAAGTTGC 671
Query 727 TTGGATAACAAGAAACAACAAATGGAACGTG-TGTTTTACGGACAAAGAGAACAGAGGAT 785
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||
Sbjct 672 TTGGATAACAAGAAACAACAAATGGAACG-GATGTTTTACGGACAGCGAGAACAGAGAAT 730
Query 786 GGCGACGCATGAGGTTGTCCGAAGTCATCGGAGGGAGCCAGAGGTGAGAGACGATGGGTG 845
||||| | | ||||||| ||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 731 GGCGATGGACAAGGTTGTTGGAAGTAATCGGAGGGAGCCAGAGTTGAGAGAGGATGGGTG 790
Query 846 GATGGAGATAGAGCTGGGAGAGTTCGAGACAGGATCAGGAGAAGGTGATGACGAC-A-A- 902
||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| | |
Sbjct 791 GATGGAGATAGAGCTCGGAGAGTTCGAGACAGGATCACGAGAAGGTGACGACGACGACAA 850
Query 903 GGAGGTTGTTATGAGTCTGA-CTGAAGTTAAAGGTTATCAATTGAAGGGTGGAATTGCCA 961
||| |||||||||||||||| | |||||||||||||| |||||||||||||| ||||| |
Sbjct 851 GGAAGTTGTTATGAGTCTGAGC-GAAGTTAAAGGTTACCAATTGAAGGGTGGGATTGCGA 909
Query 962 TTGATGGGATTGAAGTAAGGCCTAAAC----CCCT--AAAAGTGAGGGCCGGGACCAACT 1015
||||||||||||||||||||||||||| ||| ||||||||||| || ||||
Sbjct 910 TTGATGGGATTGAAGTAAGGCCTAAACTAAACCCCCCAAAAGTGAGGG-----ACTAACT 964
Query 1016 AAAAGATGAGTGCCAAATTTTGTGTTT 1042
| ||| ||||||||||||||||||||
Sbjct 965 TACAGAGGAGTGCCAAATTTTGTGTTT 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5