BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09157.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494025 jgi|Araly1|494025|fgenesh2_kg.7__3458__AT5G39650.1 1005 0.0
Ahg470999 jgi|Araly1|470999|fgenesh2_kg.1__953__AT5G39650.1 497 4e-140
> Ahg494025 jgi|Araly1|494025|fgenesh2_kg.7__3458__AT5G39650.1
Length=871
Score = 1005 bits (544), Expect = 0.0
Identities = 670/730 (92%), Gaps = 11/730 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGACGACAACGACGCAAAAT 60
|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 52 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTACGCCGCAAAAA 111
Query 61 CCGTCACCA--A-CATCGTCTCGGTCGCCCAAACCTGTCCCTCTCTCTTCACTGCCTATG 117
|| |||||| | || ||||||| || || ||||| ||| | |||||||||||||||
Sbjct 112 CCATCACCATCACCACCGTCTCGCTCACCAAAACCCGTCTCAATCTCTTCACTGCCTACA 171
Query 118 CTTCCGGCAGGAGCCGCCGCGGGAGGAGGAAAAGGTAGAAAACGTCGCATGGTGGCGAAA 177
|||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||| ||
Sbjct 172 CTTCCGGCAGGAGCCGCCGCCGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTAGCGCAA 231
Query 178 GGAGTTCAAAAAACGGTTTCGAAGACATCAATGCTCGTCAATTTCCTTCCGACAGGAACT 237
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 232 GGAGTTCAAAAAACAGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACT 291
Query 238 CTCTTGATGTTCGAAATGGTTCTTCCGA-CAATCTACCGTGACGGAGACTGTAACGGAAT 296
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 292 CTCTTGATGTTCGAAATGGTTCTTCC-ATCAATCTACCGTGACGGAGACTGTAACGGAAT 350
Query 297 CAACACACTCATGATTCATCTTCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCA 356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 351 CAACACACTCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCA 410
Query 357 TTTCACCGACAGTTTCAAAGCCTCCGATGGGAAAATTTACTACGGTTTTGTGACTCCACG 416
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 411 TTTCACCGACAGTTTCAAAGCCTCAGATGGGAAAATCTACTACGGTTTCGTGACGCCACG 470
Query 417 TGGACTCGCGGTGTTCATGAAACCACC-CTCGCCGGGGTTTGGAGGCGGAGATGTGATTG 475
|||||||||||||||||||||||| || | | |||| ||||||||||||||||||||| |
Sbjct 471 TGGACTCGCGGTGTTCATGAAACCGCCGC-CTCCGGAGTTTGGAGGCGGAGATGTGATAG 529
Query 476 CAGAGAAG-G-AGATTCCGGTGACGGATGAGAGGTATAAGTTGAGGGTTAATGACTTTGT 533
| | |||| | ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 530 C-G-GAAGCGGAGATTCCGGTGACTGATGAGAGGTATAAGTTGAAGGTTAATGACTTTGT 587
Query 534 GCATTCAGTGATGAGTGTTTTGGTTTTTATGGCGATCGCGTTTTCGGATCGGAGAGTCAC 593
||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 588 TCATGCAGTGATGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCAC 647
Query 594 AGGGTGTTTGTTTCCAGGAAAAGAGAAGGAGATGGATCAAGTTATGGAGAGTTTTCCGTT 653
|| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 648 TGGATGTTTGTTTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAAT 707
Query 654 AATGGTCGGAATTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCAGTCGATACGGTGT 713
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 AATGGTTGGAATTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATACGGTGT 767
Query 714 CGGATGCATG 723
|| ||||||
Sbjct 768 TGGTTGCATG 777
> Ahg470999 jgi|Araly1|470999|fgenesh2_kg.1__953__AT5G39650.1
Length=589
Score = 497 bits (269), Expect = 4e-140
Identities = 309/328 (94%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 369 TTTCAAAGCCTCCGATGGGAAAATTTACTACGGTTTTGTGACTCCACGTGGACTCGCGGT 428
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 231 TTTCAAAGCCTCCGATGGGAAAATCTACTACGGTTTCGTGACTCCACGTGGACTCGCGGT 290
Query 429 GTTCATGAAACCACCCTCGCCGGGGTTTGGAGGCGGAGATGTGATTGCA-GAGAAGGAGA 487
|||||||||||| || ||||||| ||||||||| ||||||||||||| | ||| |||||
Sbjct 291 GTTCATGAAACCGCCTTCGCCGGAGTTTGGAGGGGGAGATGTGATTG-AGGAGGCGGAGA 349
Query 488 TTCCGGTGACGGATGAGAGGTATAAGTTGAGGGTTAATGACTTTGTGCATTCAGTGATGA 547
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 350 TTCCGGTGACGGATGAGAGGTATAAGTTGCGGGTTAATGACTTTGTGCATGCAGTGATGA 409
Query 548 GTGTTTTGGTTTTTATGGCGATCGCGTTTTCGGATCGGAGAGTCACAGGGTGTTTGTTTC 607
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 410 GTGTTTTGGTTTTTATGGCGATTGCGTTTTCGGATCGGAGAGTCACCGGGTGTTTGTTTC 469
Query 608 CAGGAAAAGAGAAGGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGGTCGGAATTG 667
|||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 470 CAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGATCGGAATTG 529
Query 668 TTTGCAGTGCTTTGTTTCT-T-GTTTTT 693
||||||||||||||||||| | ||||||
Sbjct 530 TTTGCAGTGCTTTGTTTCTGTTGTTTTT 557
Score = 237 bits (128), Expect = 9e-62
Identities = 174/195 (89%), Gaps = 7/195 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGACGACAACGACGCAAAAT 60
||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||
Sbjct 1 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTT--ACG-CGACTCCGCCGCAAAAA 57
Query 61 CCGTCACCAACATC-GTCTCGGTCGCCCAAACCTGTCCCT-CTCTCTTCACTGCCTATGC 118
|| |||||| || | |||| ||||||| |||||||| ||| ||||||||||||| || |
Sbjct 58 CCATCACCACCA-CTGTCTAGGTCGCCAAAACCTGT-CCTACTCTCTTCACTGCTTACAC 115
Query 119 TTCCGGCAGGAGCCGCCGCGGGAGGAGGAAAAGGTAGAAAACGTCGCATGGTGGCGAAAG 178
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 116 TTCCGGCAGGAGCCGCCGCAGGAGGAGGAAAATGTGGAAAACGTCGCATGGTGGCGAAAG 175
Query 179 GAGTTCAAAAAACGG 193
|||||||||||||||
Sbjct 176 GAGTTCAAAAAACGG 190
Score = 69.4 bits (37), Expect = 3e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 235 ACTCTCTTGATGTTCGAAATGGTTCTTCCGACAATCTACC 274
|||||||||||||||||||||||||||||| |||||||||
Sbjct 191 ACTCTCTTGATGTTCGAAATGGTTCTTCCGTCAATCTACC 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5