BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09160.2
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471002 jgi|Araly1|471002|fgenesh2_kg.1__956__AT1G09160.2 2822 0.0
> Ahg471002 jgi|Araly1|471002|fgenesh2_kg.1__956__AT1G09160.2
Length=1852
Score = 2822 bits (1528), Expect = 0.0
Identities = 1756/1863 (94%), Gaps = 27/1863 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCCCAATCTGAG-AAA---AC---TCTCACTCTGCAA-CTTCGTTTCTCTTCTCC 52
||||||||||||||||| ||| || |||||||||||| ||||||||||||||| |
Sbjct 1 TTTCTTCCCAATCTGAGAAAATCCACAAAACTCACTCTGCAACCTTCGTTTCTCTTCTTC 60
Query 53 TTTCTTAAACCTCTCACGCGGTTTCAGACTTCCGTTCGCTTACCGAAGACGGCTCGGAAA 112
||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 61 TTTCTAAAACCTCTCACGCGGTTTCAGACTTCCGTTCGATTACCGACGACGGCTCGGAAA 120
Query 113 TTCTTTCCTGAAGAATCAGCGACGACCTTAGCATTATCTACAAGTCATCTTTTCTGCTAG 172
|||| ||| | |||| |||||| | |||||||||||||||| ||||||||| ||||||||
Sbjct 121 TTCTCTCC-GGAGAAGCAGCGAGGTCCTTAGCATTATCTACGAGTCATCTTCTCTGCTAG 179
Query 173 ATCTGTTGTGTATACTACTCGCGATTTCATTTT-G-AATTTGTTCCAGCCAATGCTGAAG 230
||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 180 ATCTGTTTTGTATGCTACTCGCGATTTCATTTTGGTGATTTGTTCCAGCCAATGCTGAAG 239
Query 231 GCTAGACTAAAATGAGCGTGTCAAAAGCATCGAGGACGCA-ACATTCGCTCGTTCCTCTT 289
||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 240 GCTAGACTAAAATGAGCGTGTCAAAAGCATCGAGGAC-TACACATTCGCTTGTTCCTCTT 298
Query 290 GCGACCCTGATTGGTAGGGAGCTGAGGAGCGAGAAAGTAGAGAAGCCTTTTGTCAAGTAT 349
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCTACCCTGATTGGTGGGGAGCTGAGGAGCGAGAAAGTAGAGAAGCCTTTTGTCAAGTAT 358
Query 350 GGTCAAGCAGCTCTCGCTAAGAAAGGAGAGGACTACTTTTTGATCAAAACTGACTGTGAA 409
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGTCAAGCTGCTCTCGCTAAGAAAGGAGAGGACTACTTTTTGATCAAAACTGACTGTGAG 418
Query 410 AGGGTACCTGGTGATCCATCATCGGCTTTTTCAGTTTTCGGGATATTTGACGGACACAAT 469
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 419 AGGGTACCTGGTGATCCATCATCAGCTTTTTCAGTTTTCGGGATATTTGATGGACACAAT 478
Query 470 GGTAATTCAGCTGCCATATATACTAAGGAACATCTTCTGGAAAACGTGGTGAGTGCAATT 529
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 479 GGTAATTCAGCTGCCATATATACTAAGGAACATCTTCTAGAGAACGTGGTGAGTGCAATT 538
Query 530 CCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGC 589
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 539 CCTCATGGCGCTAGCAGGGAAGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCAGGC 598
Query 590 TTTGTGAAAACTGACATTGAATTTCAGCAGAAAGGGGAAACTTCAGGAACAACCGTGACT 649
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTGTCAAAACTGACATAGAATTTCAGCAGAAAGGGGAAACTTCAGGAACAACCGTGACT 658
Query 650 TTTGTTATAATTGATGGTTGGACTATTACTGTTGCTTCTGTTGGTGACTCGCGCTGCATA 709
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 659 TTTGTTATAATTGATGGTTGGACTATCACTGTTGCTTCTGTTGGTGACTCACGCTGCATA 718
Query 710 TTGGACACCCAAGGTGGTGTGGTTTCTCTACTGACTGTTGATCACAGGCTAGAAGAGAAT 769
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 TTAGACACCCAAGGTGGTGTGGTTTCTCTGCTGACTGTTGATCACAGGCTAGAAGAGAAT 778
Query 770 GTTGAAGAAAGAGAACGCATAACTGCTAGTGGAGGTGAGGTCGGAAGACTCAATGTATTT 829
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 779 GTTGAAGAGAGAGAACGCATAACTGCCAGTGGAGGTGAGGTCGGAAGGCTCAATGTATTT 838
Query 830 GGTGGCAATGAGGTCGGCCCACTACGATGCTGGCCTGGTGGTTTATGTCTTTCGAGGTCC 889
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 GGTGGCAATGAGGTCGGCCCACTACGATGCTGGCCTGGTGGTTTGTGTCTTTCGAGGTCC 898
Query 890 ATTGGTGATACGGATGTGGGAGAATTTATTGTCCCTATACCACACGTTAAGCAAGTGAAA 949
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 ATTGGTGATACGGATGTGGGAGAATTCATTGTCCCTATACCACACGTTAAGCAAGTGAAA 958
Query 950 CTTCCTGATGCTGGAGGGAGACTCATCATAGCTTCAGATGGTATATGGGATATACTGTCT 1009
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTTCCAGATGCTGGAGGGAGACTCATCATAGCTTCAGATGGTATATGGGATATACTGTCT 1018
Query 1010 TCTGATGTGGCTGCCAAAGCTTGTCGTGGTTTATCTGCCGATCTTGCTGCTAAACTTGTT 1069
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1019 TCTGATATGGCTGCCAAAGCTTGCCGTGGTTTATCTGCCGAGCTTGCTGCTAAACTTGTT 1078
Query 1070 GTTAAGGAAGCATTGCGAACAAAAGGGTTGAAAGATGATACGACTTGTGTAGTCGTTGAC 1129
||||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1079 GTTAAGGAAGCATTGAGAACTAAAGGGTTGAAGGATGATACGACTTGTGTAGTTGTTGAC 1138
Query 1130 ATAGTTCCATCTGGTCATCTTTCCTTGGCTCCAGCACCCATGAAGAAACAGAACCCATTT 1189
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1139 ATAGTTCCATCTGGTCATCTTTCCTTGGCTCCAGCACCCATGAAGAAGCAGAATGCATTC 1198
Query 1190 ACCTCATTTCTTTCAAGGAAAAACCATATGGATACCAACAACAAAAATGGCAACAAGCTT 1249
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 ACCTCATTCCTTTCTAGGAAAAACCATAGGGATACCAACAACAAAAATGGCAACAAGCTT 1258
Query 1250 TCTGCTGTTGGAGTTGTAGAAGAATTGTTTGAAGAAGGTTCTGCTGTGCTTGCAGATAGA 1309
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1259 TCTGCTGTGGGAGTTGTAGAAGAATTGTTTGAAGAAGGTTCTGCTGTACTTGCAGATAGA 1318
Query 1310 TTGGGAAAGGATCTTCTCTCAAATACGGAAACTGGGCTCTTAAAATGTGCTGTATGCCAA 1369
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTGGGAAAGGATCCTCCCTCACATACGGAAACTGGGCTCTTAAAATGTGCTGTATGCCAA 1378
Query 1370 ATAGATGAATCTCCGAGTGAAGATTTATCAAGCAATGGGGGTTCCATCATTTCCTCAGCA 1429
| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACCGATGAATTTCCGGGTGAAGATTTATCAAGCAATGGGGGTTCCATCATTTCCTCAGCA 1438
Query 1430 TCTAAACGATGGGAAGGTCCCTTCCTATGCACAATATGCAAGAAAAAGAAAGACGCCATG 1489
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1439 TCTAAACGATGGGAAGGTCCCTTTCTGTGCACAATATGCAAGAAAAAGAAAGACGCCATG 1498
Query 1490 GAAGGAAAAAGACCAAGCAAAGGTTCAGTGACTACTTGAAGCCACTTGCGTGC-GTGaaa 1548
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 1499 GAAGGAAAAAGACCAAGCAAAGGTTCAGTGACTACTTGAAGCCACTTGTGTGCAG-GAAA 1557
Query 1549 aa-aa-TCATAAAATCCGGTATTGATTGGAAAGTAGTAGTAATAGTAGAAGTTTATGCAA 1606
|| || ||| || || || ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1558 AAGAAATCAGAA--TCAGGCATTGATTGGAAAGTAGTGGTAATAGTAGAAGTGTATGCAA 1615
Query 1607 ATGTTTGTagagagagagagagagagTGTGTGACAATAGATCCAATTCTTATCCATTGTT 1666
|||||||||||||||||||||||||| | | || | ||||||||||||||||||||||||
Sbjct 1616 ATGTTTGTAGAGAGAGAGAGAGAGAGAGAGAGA-A-TAGATCCAATTCTTATCCATTGTT 1673
Query 1667 TAAGATTTCCCTGGATTGCGTTCTTGGCATTATGCTGACCATTTACCTTCGTAGATGTGT 1726
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1674 TAAGATTTCCCTGGATTGCATTCTTGGCTTTATGCTGACCATTTACCTTCGTAGATGTGT 1733
Query 1727 TTTTGTTTGGGAAATTGCTGATATACTAACAAGAGTTTCCAAGTTGTAAGTAGAATTCAT 1786
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1734 TTTTGTTTGGGAAATTGCTGATATTCTAACAAGAGTTTCCAAGTTGTAAGTAGAATTCAT 1793
Query 1787 ATTTT-G-TTATTGTCACTCAATCCTATTGCACTCATTCATTGAAGTTTGTTTCGGTTTA 1844
||||| | ||||||||| | ||||||||||| ||||||||||||||| ||||||||||
Sbjct 1794 ATTTTTGATTATTGTCA---A-TCCTATTGCACCCATTCATTGAAGTTTATTTCGGTTTA 1849
Query 1845 TAT 1847
|||
Sbjct 1850 TAT 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70162231290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5