BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09170.1
Length=3033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311961 jgi|Araly1|311961|fgenesh1_pm.C_scaffold_1000741 2435 0.0
> Ahg311961 jgi|Araly1|311961|fgenesh1_pm.C_scaffold_1000741
Length=3132
Score = 2435 bits (1318), Expect = 0.0
Identities = 1490/1571 (95%), Gaps = 20/1571 (1%)
Strand=Plus/Plus
Query 1473 AGAGGCGGTGTTTGCAGACACTCAACCTCTGATCCGGTCTGTTCTTGATGGCTATAATGT 1532
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1572 AGAGGCGGTGTTTGCAGACACTCAACCTCTGATCCGGTCTGTTCTTGATGGTTATAATGT 1631
Query 1533 ATGCATATTTGCATACGGCCAAACAGGATCCGGAAAAACTTTCACCATGATGGGACCTAA 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 ATGCATATTTGCATACGGCCAAACAGGATCCGGAAAAACTTTCACCATGATGGGACCTAA 1691
Query 1593 TGAGCTCACGGACGAGACCTTAGGAGTAAACTACAGAGCATTGAGTGATCTCTTTCATTT 1652
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TGAGCTCACGGATGAGAGCTTAGGAGTAAACTACAGAGCATTGAGTGATCTCTTTCATTT 1751
Query 1653 GTCAAAGATTCGAAACAGTACACAAGATGGAATCAACGTACCAGAGGCGACACTGGTTCC 1712
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1752 GTCAAAGATTCGAAACAGTTCACAAGATGGAATCAACGTACCAGAGGCGACATTGGTTCC 1811
Query 1713 AGTCTCCACAACTTCAGACGTCATTCATTTGATGAATATTGGTCAAAAGAACCGTGCGGT 1772
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1812 AGTCTCCACAACTTCAGACGTCATTTATTTGATGAATATTGGTCAAAAGAACCGTGCGGT 1871
Query 1773 CAGCGCCACAGCCATGAATGACCGCAGCAGTCGCTCTCACAGCTGTCTCACAGTACACGT 1832
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1872 CAGCGCCACAGCCATGAATGACCGCAGCAGCCGCTCTCACAGCTGTCTCACTGTACATGT 1931
Query 1833 CCAAGGAAAAGATCTAACATCAGGAGTTACTCTAAGGGGTTCAATGCATTTGGTTGATCT 1892
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1932 CCAAGGAAAAGATCTAACATCAGGAGTCACTCTAAGGGGTTCAATGCATTTGGTTGATCT 1991
Query 1893 TGCGGGAAGCGAAAGGATCGACAAGTCTGAGGTCACTGGTGATAGGTTAAAAGAGGCACA 1952
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1992 TGCGGGAAGTGAAAGGATCGACAAGTCTGAGGTCACTGGTGATAGGTTAAAAGAGGCACA 2051
Query 1953 ACACATCAACAAGTCTCTCTCTGCTCTAGGAGACGTGATTGCATCTCTCTCTCAGAAAAA 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 ACACATCAACAAGTCTCTCTCTGCTCTAGGAGACGTGATTGCATCTCTCTCTCAGAAAAA 2111
Query 2013 CAACCACATTCCTTATCGCAATAGTAAACTCACCCAACTGCTCCAAGACGCTTTAGGAGG 2072
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2112 CAACCACATTCCTTATCGCAATAGTAAACTTACTCAACTGCTCCAAGACGCTTTAGGAGG 2171
Query 2073 ACAAGCGAAAACGCTCATGTTTATTCACATTAGCCCTGAACTAGAAGATTTGGGAGAAAC 2132
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2172 ACAAGCGAAAACGCTCATGTTTATTCACATTAGCCCTGAAGTAGAAGATTTGGGAGAAAC 2231
Query 2133 ACTCAGCACCCTGAAATTTGCAGAGAGGGTGGCCACTGTTGACCTCGGTGCTGCTCGTGT 2192
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2232 ACTCAGCACCTTGAAATTTGCAGAGAGGGTGGCCACTGTTGAACTCGGTGCTGCTCGTGT 2291
Query 2193 CAATAAGGACACTTCTGAGGTTAAAGAACTCAAAGAACAGATTGCTAGTTTGAAACTTGC 2252
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292 CAACAAAGACACTTCTGAGGTTAAAGAACTCAAAGAACAGATTGCTAGTTTGAAACTTGC 2351
Query 2253 GCTAGCGAGAAAGGAGAGCGGGGCAGATCAAACACAGCTCCAAAGACCCCTTACTCCTGA 2312
||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||
Sbjct 2352 GCTAGCGAGAAAGGAGAGCGGATCAGATCAAACACTGCTCCCAAGACCCCTTACGCCTGA 2411
Query 2313 TAAACTCCTCAGAAAAAAGTCACTTGGCGTTTCGTCTTCATTTTCAAAATCAGCAAACAG 2372
||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 2412 CAAACTTCTCAGAAAAAAGTCACTCGGCGTTTCGTCTTCATTCTCTAAATCAGCAAAC-- 2469
Query 2373 TACAAGACAGGTCCAAACCAAACATAAG-C--CATCACAGATTGATGATGTCAACAGCAT 2429
||||||||| ||||||||||||||||| | ||||||||||||||||| |||||| |||
Sbjct 2470 -ACAAGACAGTTCCAAACCAAACATAAGACATCATCACAGATTGATGATCTCAACAACAT 2528
Query 2430 TGAGGGTCAAAGTGACTCTGCATCTAGCCTTGACTTACAAGGACTAGTAGGTTCACCGTC 2489
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2529 TGAGGGTCAAAGTGACTCTGCATCTAGCCTTGACTTACAAGGACTAGTGGGTTCACCATC 2588
Query 2490 ATGGAAAACCCCGCCGA-GAGATGGGAAAGAGGAGGACATGGAATTTATTA-TACCAGGA 2547
|||||||| |||| ||| | |||| |||||||||||| || ||||||| || | | |||
Sbjct 2589 ATGGAAAAGCCCGTCGATG-GATGAGAAAGAGGAGGAAATAGAATTTA-TACCAGCTGGA 2646
Query 2548 AGTGAATGGGTTGATAAACACGAGGACGAAATCACGCGTAGTAGCAAACCTGAAAACAGA 2607
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2647 AGTGAATGGGTTGATAAACACGAGGACGAAATCACACGTAGTAGCAAACCTGAAAACAGA 2706
Query 2608 GCACATACACAGCTTGAGAAGCGAACGTCTAGCTTGAAACGTGAAG-CAACTCGAGGTGT 2666
||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||
Sbjct 2707 TCACATACACAGCTTGAGAAGCGATCGTCTAGCTTGAAACGTG-AGCCAACGCGAGGTGT 2765
Query 2667 AGATAAGAATAAGT---GTAATAGTAGTGTAGATAAAGGATTAGAGGTAAGGAAGATTCC 2723
||| | || |||| |||||| || |||||||||||||||||||||||||||||||||
Sbjct 2766 AGACCATAACAAGTGCAGTAATAATAATGTAGATAAAGGATTAGAGGTAAGGAAGATTCC 2825
Query 2724 ATACGAAGAAGAAGCAAATGAGTCAGATGAAACCGCAACAAGTGATTGCTCGGAGACTAA 2783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2826 ATACGAAGAAGAAGCAAATGAGTCAGATGAAACCGCAACAAGTGATTGCTCGGAGACTAA 2885
Query 2784 CTTGATGTGGCAGTTGAATGTTCAAGTGAATATGCCTAGACCAGCTTCTAATGGTTCTTC 2843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2886 CTTGATGTGGCAGTTGAATGTTCAAGTGAATATGCCTAGACCAGCTTCTAATGGTTCTTC 2945
Query 2844 AACTAAACTAAAGAAGAATCAATCAAAAAT-AAGTAGAGTTGCTGCTGAGACCAGGAGTA 2902
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2946 AACTAAGCTAAAGAAGAATCAATCAAAAATCAA-TAGAGTTGCTGCTGAGACCAGGAGTA 3004
Query 2903 TGATACCTTCGCTAATTCCGACGCCTACGAGGACATTATCGCTTGGGGCGGCTATTAGCT 2962
|||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||
Sbjct 3005 TGATACCTTCTTTAATTCCCACGCCTACGAGGAGACTATCGCTTGGGGCA---ATTAGCA 3061
Query 2963 CGCCAGGACAAACGTCCTCAAGGCATAACAACAGTACAGTAGTTGTGAAGAAGAGACAAA 3022
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3062 CACCAGGACAAACTTCCTCAAGGCATAACAACAGTACAGTAGTTGTGAAGAAGAGACAAA 3121
Query 3023 ATCCCAAGTAA 3033
|||||||||||
Sbjct 3122 ATCCCAAGTAA 3132
Score = 1153 bits (624), Expect = 0.0
Identities = 736/789 (93%), Gaps = 12/789 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACGGAGCAACAAGATTCACAACTTTGTTTGGCGA-CGATTCTGGAGGATTTTCT 59
|||||||| |||||||||||||| ||||| ||||| || | |||||||||||||||||||
Sbjct 1 ATGGCGACCGAGCAACAAGATTCGCAACTCTGTTTAGC-ATCGATTCTGGAGGATTTTCT 59
Query 60 TAAACAACGAAACATTCAAGTTAGCGTTGGTGTGGATTCTTCGAGCTTGAAAAAAGCCGA 119
||||||||| || | | | || ||||||||| ||| |||||||| |||||| |||||
Sbjct 60 TAAACAACG-AA-A-T--A-TTCGCGTTGGTGCGGA---TTCGAGCTCGAAAAAGGCCGA 110
Query 120 TGAAACTTTTGGAGGAAGGGATTTGCCAGTAGATCCTTCAGACTTGAGAAGGTATGAAGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 TGAAACTTTTGGAGGAAGGGATTTGCCAGTAGATCCTTCAGACTTGAGAAGGTATGAAGC 170
Query 180 AGCAAGGTGGGTAAGGAACACACTTGGTGTAGTTGGAGGAAGAGATTTGCCAGCAGATCC 239
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 171 AGCAAGGTGGGTAAGAAACACACTTGGTGTAGTTGGAGGAAGAGATTTGCCAGCTGATCC 230
Query 240 TTCAGAGGAAGATTTTAGAATTGCATTAAGAAGTGGAATTTTACTCTGCAATGTCCTCAA 299
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 231 TTCAGAGGATGATTTCAGAATTGCATTAAGAAGTGGAATTTTGCTCTGCAATGTCCTCAA 290
Query 300 CAGAGTTAAACCTGGTGCTGTCCCAAAAGTCGTCGAAGCTCCAAATGATCCTCTTGTTAA 359
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 291 CAGAGTTAAACCTGGTGCTGTACCAAAAGTCGTTGAAGCTCCAAATGATCCTCTTGTTAA 350
Query 360 TCAAGACGGTGCAGCTCTATCTGCGTTTCAGTACTTTGAAAATCTTCGAAATTTTCTTGT 419
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 351 CCAAGACGGTGCAGCTCTATCTGCGTTTCAGTACTTTGAGAATCTTCGAAATTTTCTTGT 410
Query 420 GTTTGTGGAGGAAATGGGTATTCCAACGTTTGAAGTCTCCGATTTTGAGAAGGGAGGTAA 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GGTTGTGGAGGAAATGGGTATTCCAACGTTTGAAGTCTCCGATTTTGAGAAGGGAGGTAA 470
Query 480 ATCCGCAAGAATCGTGGAGTGTGTTTTGGCTCTAAAGTCATATCGTGAGTGGAAACAGAG 539
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 471 ATCCGCAAGAATTGTGGAGTGTCTTTTGGCTCTCAAGTCATATCGTGAGTGGAAACAGAG 530
Query 540 CGGAGGAAGCGGTACATGGAGATACATTCTGAACTCAAAACCAACCACGTTTGGCATTGC 599
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||
Sbjct 531 CGGAGGAAGCGGTACATGGAGATACATTTTGAACTCGAAACCAACCACGTTTGGAATCGC 590
Query 600 AAAACAATACAAACGCAAAGACTCAGAAGTACCTGTGGATGCTGTCACAAATAGCCCTTC 659
||||||||||| ||| ||||||||||||| || ||||||||| ||||||| ||||||||
Sbjct 591 AAAACAATACAGACGTAAAGACTCAGAAGCACATGTGGATGCGGTCACAAGTAGCCCTTT 650
Query 660 TAGCACTCCATCAAGTGAACAACCTTTGTTAGATCAATCTGATTCTAATACCAAAAATGA 719
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 651 TAGCACTCAATCCAGTGAACAACCTTTGTTTGATCAATCTGATTCTAATACCAAACATGA 710
Query 720 TGGAACTGCCAGTTCAATAGATGCCATTGTCCGTGCTGTTTTTTCTGATATGAAGCAAGA 779
|||||||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 711 AGGAACTGCCAATTCAATAGATGCCATTGTCCGTGCGGTTTTTTGTGACATGAAGCAAGA 770
Query 780 AGATATTCC 788
||| |||||
Sbjct 771 AGA-ATTCC 778
Score = 730 bits (395), Expect = 0.0
Identities = 476/515 (92%), Gaps = 6/515 (1%)
Strand=Plus/Plus
Query 785 TTCCAGTAATTGTGGAAGATATGCTGAAAAGCGTTATGGTAGAATATGAACGTAGATTAG 844
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 811 TTCCAG--ATTGTGGAAGATATGCTGAAAAGTGTCATGGTAGAATATGAACGTAGATTAG 868
Query 845 CAACACAGAACGAATTGCTAC-TGATGAGCGCGGGAAACAGAGATAAGCTTGGCAGTGGC 903
||||||| ||||||||| | | | |||||||||||||||| |||||||||||| ||| |
Sbjct 869 CAACACAAAACGAATTGATCCAT-ATGAGCGCGGGAAACAAAGATAAGCTTGGTTGTGAC 927
Query 904 GATCTTGGGAGAACTATTTCAGGAAATGAGGAGACGCTAAGTGATGCTTCGTACGGAGAA 963
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 928 GATCTTGGGAGAACTATTTCAGGAAATGAAGAGACGCTAAGTGATGCTTCGTATGGAGAA 987
Query 964 GAAAACGTGACAGAGATTGTAAACAACAACATGGAAGCTTCACAAGATAGTAATGTTGAA 1023
||||| || || ||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 988 GAAAATTTGTCAAAGATTGTAAACAACAACATGGAAGCTTCAGAAAATAATAATGTTGAT 1047
Query 1024 GAATTGGAAAA-CCAAGATTATGAGCTCTATGCAATTTCAAAAGAGAAGACCGAGAAGCA 1082
||| | ||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1048 GAA-TCGAAAAGCCAAGATTGTGAGCTCTATGCGATTTCAAAAGAGAAGACCGAGAAGCA 1106
Query 1083 ACAACTGATAATCGAAAGACAACAAACTCATACTGAGGAACTGAAACATGATCTAAAGGC 1142
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1107 ACAAATGATAATCGACAGACAACAAACTCATACTGAGGAACTGAAACATGATTTAAAGGC 1166
Query 1143 TGTAAAAGCAGGTCTCAGTCTCTTGCAGATGAAATACCAGCAAGAGTTTACAAGCTTAGG 1202
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1167 TGTAAAAGCAGGTCTCAGTCTCATGCAGATGAAATACCAGCAAGAGTTTACAAGCCTAGG 1226
Query 1203 CAAGCATTTGCATGGACTTACTTATGCAGCTACAGGATACCAAAGGGTTCTTGAAGAAAA 1262
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CGAGCATTTGCATGGACTTGCTTATGCAGCTACAGGATACCAAAGGGTTCTTGAAGAAAA 1286
Query 1263 CCGGAAACTTTATAATCAGGTTCAAGACCTCAAAG 1297
||| |||||||| ||||| || |||||||||||||
Sbjct 1287 CCGAAAACTTTACAATCAAGTCCAAGACCTCAAAG 1321
Score = 265 bits (143), Expect = 2e-69
Identities = 169/181 (93%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 1296 AGGAAGCATAAGAGTTTACTGTCGAGTGAGGCCATTCTTACCTGGAC-AGAAAAGTGTCT 1354
||| |||||| ||||||| |||||||||||||| ||||||||||||| || |||||||||
Sbjct 1362 AGGTAGCATACGAGTTTATTGTCGAGTGAGGCCGTTCTTACCTGGACAAG-AAAGTGTCT 1420
Query 1355 TAACTACTGTGGATCACTTGGAGGATTCAACTC-TATCAATTGCAACCCCTTCAAAGTAT 1413
||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||
Sbjct 1421 TAACTACTGTGGATCACTTGGAGGAGTCAAC-CATAACAATTGCAACCCCTTCAAAGTAT 1479
Query 1414 GGAAAAGAAGGTCAAAAAACATTCACCTTCAACAAAGTGTTTGGCCCTTCAGCATCTCAA 1473
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1480 GGAAAAGAAGGTCAAAAATCATTCACCTTCAACAAAGTGTTTGGCCCTTCAGCATCACAA 1539
Query 1474 G 1474
|
Sbjct 1540 G 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114537366715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5