BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09176.1

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471005 jgi|Araly1|471005|fgenesh2_kg.1__959__AT1G09176.1          235    2e-61


> Ahg471005 jgi|Araly1|471005|fgenesh2_kg.1__959__AT1G09176.1
Length=423

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 355/454 (78%), Gaps = 59/454 (13%)
 Strand=Plus/Plus

Query  28   ATGGTTCACGTATTACTATTGTTACTAGCGATTCATGCGCATATCCAAGCCGTTGCTTCA  87
            |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||
Sbjct  1    ATGGCTCACGTATTACTACTGTTACTTGCGATTCATGCGCATATCCAAGCCGTTGTTTCA  60

Query  88   ATCACAAATACTTCTGTCTCAGCCGTCCATCTGAAACCTAATTCCATCTTAGGTAACAA-  146
            ||||||         | | | |   |||||||||||||||| ||||||| ||| ||| | 
Sbjct  61   ATCACA---------G-C-C-G---TCCATCTGAAACCTAACTCCATCTCAGG-AACTAC  104

Query  147  AACGTGTTGTAAGATAGATTTCCCGGTTTGGC-AGCGGGAGCTTCGAAGCAGCggtggtg  205
            |||||||||| ||||||||  |||  |||||| | |||||||||||||||||||||||| 
Sbjct  105  AACGTGTTGTGAGATAGATAACCCATTTTGGCGA-CGGGAGCTTCGAAGCAGCGGTGGTA  163

Query  206  gcggtggaggaggtcgtggtggtggtggaggtggcagcagtggtCGAGGCGGCAACAGCG  265
            |||| |||||||||| |||||||||   |      ||||||||||||||||| |||||||
Sbjct  164  GCGGCGGAGGAGGTCATGGTGGTGG---A------AGCAGTGGTCGAGGCGGAAACAGCG  214

Query  266  GTAAAGGGGGCAGTAGAGGATCTTCTAA-TAGCGGCGGC-CGTGGCAGCAGTGGAA-ATG  322
            ||||||| || ||||||| ||     |  |||||| ||| | ||| |  | ||||| || 
Sbjct  215  GTAAAGGCGGTAGTAGAG-ATGGAGGAGGTAGCGGTGGCGC-TGGGA--A-TGGAAGATC  269

Query  323  GT--AAT-G-G-CGGT-A-C-C-G--GTGGT-G--GC--------C-ATTCTGTAGGAAG  359
             |  ||| | | |||  | | | |  ||||| |  ||        | |||||||||||||
Sbjct  270  TTCTAATAGTGGCGGCCATCGCAGCAGTGGTAGTAGCAATGGTGGCCATTCTGTAGGAAG  329

Query  360  CGGGGGTGACTGCTTCAAACACCGTGGTCTCACCGGAACTACAATATTTCTCGTCTTCGT  419
            ||| ||||||||||| ||||||||||||||||||||  ||||| ||||||||||||| ||
Sbjct  330  CGGCGGTGACTGCTTGAAACACCGTGGTCTCACCGGTTCTACATTATTTCTCGTCTTTGT  389

Query  420  AAGCACTTTGATTCTTTATGCGTTGAAACAGTAA  453
            || | |||||||| ||||  ||||||||||||||
Sbjct  390  AACCTCTTTGATTATTTACACGTTGAAACAGTAA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16368747681


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5